Wall clock time and date at job start Tue Mar 31 2020 21:00:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86800 * 119.99848 * 2 1 4 4 H 1.48503 * 109.46907 * 269.99507 * 3 2 1 5 5 H 1.48500 * 109.47463 * 29.99375 * 3 2 1 6 6 H 1.48500 * 109.47210 * 149.99783 * 3 2 1 7 7 C 1.38801 * 120.00279 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00318 * 179.97438 * 7 2 1 9 9 S 1.76199 * 119.99835 * 0.02562 * 7 2 1 10 10 C 1.80996 * 100.00206 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.47376 * 180.02562 * 10 9 7 12 12 O 1.21284 * 119.99935 * 359.97438 * 11 10 9 13 13 N 1.34779 * 120.00074 * 180.02562 * 11 10 9 14 14 N 1.40093 * 119.99925 * 179.97438 * 13 11 10 15 15 C 1.38553 * 120.00063 * 179.97438 * 14 13 11 16 16 C 1.38656 * 121.07036 * 0.02562 * 15 14 13 17 17 C 1.38862 * 119.56764 * 179.97438 * 16 15 14 18 18 Cl 1.73609 * 119.04124 * 180.02562 * 17 16 15 19 19 N 1.31466 * 121.91338 * 359.44660 * 17 16 15 20 20 C 1.33759 * 121.76481 * 0.84392 * 19 17 16 21 21 N 1.33720 * 120.77140 * 179.17605 * 20 19 17 22 22 C 1.31196 * 121.41259 * 180.02562 * 21 20 19 23 23 C 1.39111 * 121.79118 * 359.97438 * 22 21 20 24 24 C 1.36828 * 119.77986 * 0.02562 * 23 22 21 25 25 C 1.40296 * 118.13788 * 0.25898 * 24 23 22 26 26 H 0.96994 * 120.00214 * 0.02562 * 1 2 3 27 27 H 1.08997 * 109.46914 * 59.99752 * 10 9 7 28 28 H 1.09004 * 109.46875 * 300.00343 * 10 9 7 29 29 H 0.96995 * 119.99663 * 359.97438 * 13 11 10 30 30 H 0.96995 * 120.00411 * 359.97438 * 14 13 11 31 31 H 1.07998 * 120.21213 * 359.95568 * 16 15 14 32 32 H 1.08001 * 119.10492 * 179.97438 * 22 21 20 33 33 H 1.07998 * 120.11048 * 179.97438 * 23 22 21 34 34 H 1.08002 * 120.92777 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6528 0.6999 6 1 3.5478 1.4403 0.7001 7 6 2.0104 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0001 9 16 1.1294 -2.7280 0.0005 10 6 2.5159 -3.8914 0.0005 11 6 1.9875 -5.3027 -0.0001 12 8 0.7912 -5.5023 0.0000 13 7 2.8443 -6.3431 0.0003 14 7 2.3530 -7.6551 0.0003 15 6 3.2338 -8.7246 0.0002 16 6 4.6054 -8.5221 0.0006 17 6 5.4598 -9.6168 0.0010 18 17 7.1748 -9.3474 0.0023 19 7 5.0076 -10.8512 0.0118 20 6 3.6976 -11.1213 0.0062 21 7 3.2596 -12.3848 0.0008 22 6 1.9777 -12.6641 -0.0052 23 6 1.0099 -11.6648 -0.0058 24 6 1.3902 -10.3504 -0.0006 25 6 2.7625 -10.0587 -0.0002 26 1 -0.4850 0.8400 -0.0004 27 1 3.1245 -3.7313 0.8905 28 1 3.1245 -3.7313 -0.8895 29 1 3.8010 -6.1834 0.0006 30 1 1.3963 -7.8148 0.0003 31 1 5.0067 -7.5194 0.0004 32 1 1.6653 -13.6979 -0.0099 33 1 -0.0381 -11.9256 -0.0113 34 1 0.6545 -9.5597 -0.0013 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001177422056.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:00:20 Heat of formation + Delta-G solvation = 47.016063 kcal Electronic energy + Delta-G solvation = -22485.163266 eV Core-core repulsion = 18763.973664 eV Total energy + Delta-G solvation = -3721.189602 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 338.034 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.44007 -41.00991 -39.18031 -38.13383 -37.26715 -35.00720 -34.58054 -32.92973 -31.83546 -31.42083 -29.48069 -27.64636 -25.83065 -25.40356 -23.24982 -22.64717 -20.57688 -19.93606 -19.61667 -18.86324 -17.94231 -17.59036 -16.87279 -16.87183 -16.74556 -16.32682 -16.16734 -16.07505 -15.78596 -15.21028 -14.90540 -14.53795 -14.52591 -14.13597 -14.03952 -13.57459 -13.16980 -12.95272 -12.89427 -12.63786 -12.42656 -12.18694 -11.88430 -11.76580 -11.56672 -11.37397 -11.14006 -10.44395 -10.30306 -10.22950 -10.01428 -8.80669 -8.65518 -8.35347 -6.12655 -0.81340 -0.56500 0.31386 0.61147 0.75611 1.34303 1.34347 1.43568 1.51822 1.62950 1.67671 2.26016 2.68362 2.83634 2.95075 3.00137 3.21481 3.30902 3.33186 3.65659 3.71579 3.85845 4.06668 4.16968 4.25480 4.36108 4.46408 4.49431 4.69626 4.85118 5.04378 5.24691 5.43999 5.53110 5.86585 6.20304 6.22366 6.26569 6.98879 7.05106 7.07544 8.73460 Molecular weight = 338.03amu Principal moments of inertia in cm(-1) A = 0.017077 B = 0.002335 C = 0.002057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1639.199490 B =11986.110936 C =13610.158602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.015 3.985 3 Si 0.995 3.005 4 H -0.269 1.269 5 H -0.281 1.281 6 H -0.257 1.257 7 C -0.545 4.545 8 H 0.087 0.913 9 S -0.138 6.138 10 C -0.124 4.124 11 C 0.543 3.457 12 O -0.550 6.550 13 N -0.511 5.511 14 N -0.501 5.501 15 C 0.305 3.695 16 C -0.277 4.277 17 C 0.272 3.728 18 Cl -0.014 7.014 19 N -0.543 5.543 20 C 0.343 3.657 21 N -0.511 5.511 22 C 0.175 3.825 23 C -0.175 4.175 24 C -0.039 4.039 25 C -0.206 4.206 26 H 0.271 0.729 27 H 0.123 0.877 28 H 0.124 0.876 29 H 0.441 0.559 30 H 0.442 0.558 31 H 0.168 0.832 32 H 0.206 0.794 33 H 0.186 0.814 34 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.569 -21.856 -0.038 23.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.190 4.190 3 Si 0.817 3.183 4 H -0.195 1.195 5 H -0.206 1.206 6 H -0.181 1.181 7 C -0.693 4.693 8 H 0.106 0.894 9 S 0.089 5.911 10 C -0.276 4.276 11 C 0.330 3.670 12 O -0.425 6.425 13 N -0.262 5.262 14 N -0.221 5.221 15 C 0.186 3.814 16 C -0.307 4.307 17 C 0.093 3.907 18 Cl 0.015 6.985 19 N -0.260 5.260 20 C 0.104 3.896 21 N -0.222 5.222 22 C 0.002 3.998 23 C -0.195 4.195 24 C -0.066 4.066 25 C -0.216 4.216 26 H 0.080 0.920 27 H 0.142 0.858 28 H 0.142 0.858 29 H 0.287 0.713 30 H 0.287 0.713 31 H 0.185 0.815 32 H 0.222 0.778 33 H 0.203 0.797 34 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 6.849 -23.203 -0.020 24.192 hybrid contribution 0.779 2.579 -0.014 2.694 sum 7.627 -20.624 -0.034 21.989 Atomic orbital electron populations 1.70158 1.07904 1.28621 1.48059 1.26067 0.95902 1.03213 0.93825 0.84999 0.78301 0.76290 0.78713 1.19474 1.20646 1.18094 1.23220 0.95562 0.91813 1.58708 0.89450 1.85609 1.09469 0.98910 1.97114 1.23292 1.04355 0.91690 1.08261 1.20352 0.85982 0.85504 0.75202 1.90740 1.16695 1.85323 1.49780 1.44888 1.10469 0.93713 1.77122 1.43165 1.08218 0.93280 1.77470 1.17605 0.89633 0.85256 0.88954 1.20955 0.90302 1.00767 1.18655 1.21303 0.87973 0.88700 0.92681 1.98423 1.08824 1.95359 1.95936 1.66734 1.15452 1.22027 1.21794 1.18901 0.87414 0.88993 0.94292 1.67738 1.19465 1.18799 1.16201 1.23851 0.85985 1.02702 0.87231 1.22339 1.03683 0.92041 1.01414 1.21578 0.92852 0.99486 0.92711 1.19220 0.97361 0.92037 1.12995 0.92021 0.85845 0.85834 0.71286 0.71263 0.81479 0.77759 0.79714 0.82560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.32 13.22 21.65 0.29 -53.04 16 2 C 0.01 0.81 5.49 84.86 0.47 1.27 16 3 Si 0.99 41.38 29.55 68.60 2.03 43.41 16 4 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 5 H -0.28 -11.55 7.11 99.48 0.71 -10.84 16 6 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 7 C -0.55 -28.77 9.50 67.95 0.65 -28.13 16 8 H 0.09 4.22 7.80 -2.91 -0.02 4.20 16 9 S -0.14 -6.89 20.57 -56.49 -1.16 -8.05 16 10 C -0.12 -4.03 6.16 71.24 0.44 -3.60 16 11 C 0.54 16.15 7.96 87.66 0.70 16.85 16 12 O -0.55 -20.97 15.70 -3.04 -0.05 -21.02 16 13 N -0.51 -10.31 6.22 -173.53 -1.08 -11.39 16 14 N -0.50 -9.59 6.36 -50.59 -0.32 -9.91 16 15 C 0.30 5.84 6.77 38.98 0.26 6.10 16 16 C -0.28 -5.16 9.27 22.52 0.21 -4.95 16 17 C 0.27 6.13 7.25 84.90 0.62 6.75 16 18 Cl -0.01 -0.27 29.07 -2.72 -0.08 -0.35 16 19 N -0.54 -14.76 10.38 -185.03 -1.92 -16.69 16 20 C 0.34 8.56 7.62 134.97 1.03 9.59 16 21 N -0.51 -11.65 10.43 -193.98 -2.02 -13.68 16 22 C 0.18 2.25 11.14 85.00 0.95 3.19 16 23 C -0.17 -1.68 10.04 22.15 0.22 -1.45 16 24 C -0.04 -0.54 9.61 22.44 0.22 -0.33 16 25 C -0.21 -4.13 5.75 -21.16 -0.12 -4.25 16 26 H 0.27 14.79 8.31 -92.71 -0.77 14.02 16 27 H 0.12 3.47 8.14 -2.40 -0.02 3.45 16 28 H 0.12 3.47 8.14 -2.39 -0.02 3.45 16 29 H 0.44 6.05 6.68 -213.33 -1.42 4.63 16 30 H 0.44 8.33 6.25 -213.33 -1.33 7.00 16 31 H 0.17 2.17 6.30 -2.91 -0.02 2.15 16 32 H 0.21 0.89 8.06 -2.91 -0.02 0.87 16 33 H 0.19 0.33 8.06 -2.91 -0.02 0.30 16 34 H 0.16 1.52 6.59 -2.91 -0.02 1.50 16 Total: -1.00 -78.09 333.72 -0.25 -78.34 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: -1.55 Total: 11.33 kcal Atomic # 6 Polarization: -4.58 SS G_CDS: 5.63 Total: 1.05 kcal Atomic # 7 Polarization: -99.65 SS G_CDS: -5.06 Total: -104.71 kcal Atomic # 8 Polarization: -20.97 SS G_CDS: -0.05 Total: -21.02 kcal Atomic # 14 Polarization: 41.38 SS G_CDS: 2.03 Total: 43.41 kcal Atomic # 16 Polarization: -6.89 SS G_CDS: -1.16 Total: -8.05 kcal Atomic # 17 Polarization: -0.27 SS G_CDS: -0.08 Total: -0.35 kcal Total: -78.09 -0.25 -78.34 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177422056.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.356 kcal (2) G-P(sol) polarization free energy of solvation -78.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.340 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds