Wall clock time and date at job start Tue Mar 31 2020 20:06:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.37095 * 119.99796 * 2 1 4 4 H 1.08001 * 120.00261 * 204.39244 * 3 2 1 5 5 C 1.38953 * 120.00438 * 24.39123 * 3 2 1 6 6 N 1.31417 * 119.99718 * 12.64386 * 5 3 2 7 7 Si 1.86794 * 120.00342 * 192.64274 * 5 3 2 8 8 H 1.48499 * 109.47253 * 90.00423 * 7 5 3 9 9 H 1.48503 * 109.47084 * 210.00048 * 7 5 3 10 10 H 1.48494 * 109.47361 * 330.00083 * 7 5 3 11 11 C 1.34773 * 120.00192 * 179.97438 * 2 1 3 12 12 O 1.21289 * 119.99954 * 179.97438 * 11 2 1 13 13 C 1.50695 * 119.99821 * 0.02562 * 11 2 1 14 14 O 1.42903 * 109.47003 * 179.97438 * 13 11 2 15 15 C 1.35727 * 116.99823 * 179.97438 * 14 13 11 16 16 N 1.32254 * 119.67127 * 359.97438 * 15 14 13 17 17 C 1.32035 * 121.65702 * 180.02562 * 16 15 14 18 18 Cl 1.73602 * 119.59614 * 180.02562 * 17 16 15 19 19 C 1.38354 * 120.81015 * 359.73747 * 17 16 15 20 20 Cl 1.73595 * 120.37569 * 180.26387 * 19 17 16 21 21 C 1.38822 * 119.25459 * 0.51005 * 19 17 16 22 22 C 1.38545 * 118.47794 * 359.50436 * 21 19 17 23 23 Cl 1.73598 * 120.42827 * 180.22493 * 22 21 19 24 24 H 1.08998 * 109.47026 * 265.86367 * 1 2 3 25 25 H 1.09001 * 109.47636 * 25.86437 * 1 2 3 26 26 H 1.09004 * 109.47502 * 145.86570 * 1 2 3 27 27 H 0.96998 * 120.00029 * 179.97438 * 6 5 3 28 28 H 1.08999 * 109.47541 * 60.00134 * 13 11 2 29 29 H 1.09002 * 109.47193 * 299.99400 * 13 11 2 30 30 H 1.08001 * 120.75701 * 179.77718 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1504 1.1873 0.0000 4 1 3.1581 1.2291 -0.3863 5 6 1.5487 2.3370 0.4969 6 7 0.4344 2.2492 1.1881 7 14 2.3236 4.0073 0.1826 8 1 1.7867 4.5720 -1.0816 9 1 2.0032 4.9214 1.3083 10 1 3.7966 3.8566 0.0711 11 6 2.1389 -1.1671 0.0005 12 8 3.3518 -1.1671 0.0001 13 6 1.3854 -2.4722 0.0005 14 8 2.3141 -3.5584 0.0005 15 6 1.7953 -4.8126 0.0011 16 7 0.4832 -4.9783 0.0021 17 6 -0.0635 -6.1802 0.0031 18 17 -1.7925 -6.3357 0.0037 19 6 0.7248 -7.3172 -0.0022 20 17 -0.0059 -8.8919 -0.0077 21 6 2.1066 -7.1847 0.0020 22 6 2.6480 -5.9094 0.0010 23 17 4.3694 -5.6851 0.0002 24 1 -0.3633 -0.0741 1.0250 25 1 -0.3634 0.9247 -0.4483 26 1 -0.3634 -0.8506 -0.5767 27 1 0.0146 3.0517 1.5353 28 1 0.7591 -2.5302 -0.8897 29 1 0.7585 -2.5298 0.8903 30 1 2.7450 -8.0559 0.0016 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001177755771.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:06:08 Heat of formation + Delta-G solvation = -54.830020 kcal Electronic energy + Delta-G solvation = -21606.698521 eV Core-core repulsion = 17708.490139 eV Total energy + Delta-G solvation = -3898.208381 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 337.978 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.20342 -40.59008 -39.20748 -38.03930 -37.80245 -37.59676 -36.68507 -33.81025 -33.77032 -31.77512 -29.77384 -28.00363 -26.30985 -25.12339 -24.67863 -21.26257 -20.02568 -19.02799 -18.86260 -18.24630 -17.86606 -17.63823 -16.83896 -16.63203 -16.29186 -15.98596 -15.25029 -15.13957 -15.01148 -14.51568 -13.98305 -13.82161 -13.63208 -13.35760 -13.25144 -13.17595 -12.93208 -12.72054 -12.65123 -12.39559 -12.29617 -12.13891 -12.07929 -11.94032 -11.33342 -11.03899 -10.96244 -10.48037 -9.75602 -9.63787 -8.39022 -6.05388 -0.72988 -0.43704 0.28220 0.53789 0.96014 1.36306 1.37066 1.45673 1.56916 1.86317 1.94194 2.28647 2.79913 3.00932 3.03069 3.26506 3.47935 3.76343 3.89013 4.00860 4.07319 4.15103 4.56338 4.58901 4.96895 5.31561 5.41751 5.63346 5.97153 6.05730 6.41086 7.08721 7.33105 7.88723 8.64179 Molecular weight = 337.98amu Principal moments of inertia in cm(-1) A = 0.018219 B = 0.003005 C = 0.002598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.504759 B = 9315.378041 C =10774.899458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.114 3.886 2 N -0.451 5.451 3 C -0.347 4.347 4 H 0.074 0.926 5 C 0.002 3.998 6 N -0.892 5.892 7 Si 0.992 3.008 8 H -0.263 1.263 9 H -0.272 1.272 10 H -0.276 1.276 11 C 0.434 3.566 12 O -0.616 6.616 13 C 0.079 3.921 14 O -0.279 6.279 15 C 0.345 3.655 16 N -0.522 5.522 17 C 0.219 3.781 18 Cl 0.012 6.988 19 C -0.104 4.104 20 Cl -0.005 7.005 21 C 0.008 3.992 22 C -0.105 4.105 23 Cl -0.020 7.020 24 H 0.048 0.952 25 H 0.065 0.935 26 H 0.067 0.933 27 H 0.276 0.724 28 H 0.107 0.893 29 H 0.102 0.898 30 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.962 -21.999 -2.447 22.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.028 4.028 2 N -0.170 5.170 3 C -0.475 4.475 4 H 0.092 0.908 5 C -0.201 4.201 6 N -0.530 5.530 7 Si 0.816 3.184 8 H -0.188 1.188 9 H -0.197 1.197 10 H -0.201 1.201 11 C 0.222 3.778 12 O -0.503 6.503 13 C 0.001 3.999 14 O -0.183 6.183 15 C 0.165 3.835 16 N -0.250 5.250 17 C 0.054 3.946 18 Cl 0.041 6.959 19 C -0.135 4.135 20 Cl 0.024 6.976 21 C -0.017 4.017 22 C -0.136 4.136 23 Cl 0.009 6.991 24 H 0.067 0.933 25 H 0.083 0.917 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.125 0.875 29 H 0.120 0.880 30 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -4.862 -21.118 -2.348 21.797 hybrid contribution 0.434 0.446 0.075 0.627 sum -4.427 -20.672 -2.273 21.263 Atomic orbital electron populations 1.21567 0.78854 1.01349 1.01065 1.43709 1.06955 1.03985 1.62378 1.19638 1.00724 0.85509 1.41579 0.90842 1.26125 0.96967 1.02997 0.93977 1.70051 1.19482 1.31084 1.32333 0.84948 0.78308 0.76680 0.78508 1.18777 1.19735 1.20098 1.20344 0.87959 0.85516 0.83974 1.90529 1.15624 1.87558 1.56548 1.22304 0.90182 0.82283 1.05151 1.86436 1.34713 1.11089 1.86104 1.19637 0.86641 0.86084 0.91161 1.66905 1.11142 1.26019 1.20919 1.21421 0.89174 0.87551 0.96460 1.98454 1.04629 1.97077 1.95774 1.21283 0.92781 0.88351 1.11088 1.98416 1.82020 1.20457 1.96739 1.21578 0.92660 0.96423 0.91079 1.20912 0.87862 0.92228 1.12559 1.98431 1.06596 1.97343 1.96730 0.93297 0.91663 0.91433 0.91404 0.87496 0.88028 0.77555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 4.93 8.44 127.77 1.08 6.01 16 2 N -0.45 -23.34 3.01 -658.91 -1.98 -25.32 16 3 C -0.35 -19.71 9.24 84.04 0.78 -18.93 16 4 H 0.07 4.47 7.45 -2.91 -0.02 4.44 16 5 C 0.00 0.10 5.04 84.93 0.43 0.53 16 6 N -0.89 -46.47 10.83 21.66 0.23 -46.23 16 7 Si 0.99 41.94 29.57 68.60 2.03 43.97 16 8 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 9 H -0.27 -10.99 7.11 99.48 0.71 -10.29 16 10 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 11 C 0.43 21.87 7.70 87.66 0.68 22.55 16 12 O -0.62 -36.35 16.21 15.98 0.26 -36.09 16 13 C 0.08 3.01 4.40 71.23 0.31 3.33 16 14 O -0.28 -10.57 9.12 -71.46 -0.65 -11.22 16 15 C 0.35 10.35 7.48 84.80 0.63 10.99 16 16 N -0.52 -14.45 9.19 -299.61 -2.75 -17.21 16 17 C 0.22 4.91 7.27 84.69 0.62 5.52 16 18 Cl 0.01 0.23 28.11 -2.72 -0.08 0.16 16 19 C -0.10 -1.86 6.34 22.44 0.14 -1.72 16 20 Cl -0.01 -0.07 27.98 -2.72 -0.08 -0.15 16 21 C 0.01 0.14 9.77 22.48 0.22 0.36 16 22 C -0.11 -2.54 6.36 22.51 0.14 -2.40 16 23 Cl -0.02 -0.51 28.54 -2.72 -0.08 -0.58 16 24 H 0.05 2.15 7.83 -2.39 -0.02 2.13 16 25 H 0.06 2.97 6.80 -2.39 -0.02 2.95 16 26 H 0.07 2.32 6.61 -2.38 -0.02 2.30 16 27 H 0.28 13.42 8.31 -92.71 -0.77 12.65 16 28 H 0.11 3.57 7.37 -2.39 -0.02 3.56 16 29 H 0.10 3.59 8.07 -2.39 -0.02 3.57 16 30 H 0.21 1.87 8.06 -2.91 -0.02 1.85 16 Total: -1.00 -67.46 316.43 3.15 -64.31 By element: Atomic # 1 Polarization: 0.92 SS G_CDS: 1.22 Total: 2.14 kcal Atomic # 6 Polarization: 21.20 SS G_CDS: 5.03 Total: 26.23 kcal Atomic # 7 Polarization: -84.26 SS G_CDS: -4.50 Total: -88.76 kcal Atomic # 8 Polarization: -46.92 SS G_CDS: -0.39 Total: -47.31 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 2.03 Total: 43.97 kcal Atomic # 17 Polarization: -0.35 SS G_CDS: -0.23 Total: -0.58 kcal Total: -67.46 3.15 -64.31 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177755771.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.479 kcal (2) G-P(sol) polarization free energy of solvation -67.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds