Wall clock time and date at job start Tue Mar 31 2020 21:11:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86799 * 120.00146 * 2 1 4 4 H 1.48510 * 109.46839 * 269.99585 * 3 2 1 5 5 H 1.48497 * 109.47410 * 29.99480 * 3 2 1 6 6 H 1.48499 * 109.47405 * 150.00186 * 3 2 1 7 7 C 1.38805 * 120.00022 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99791 * 179.97438 * 7 2 1 9 9 S 1.76200 * 119.99809 * 0.02562 * 7 2 1 10 10 C 1.81002 * 99.99831 * 179.97438 * 9 7 2 11 11 C 1.50705 * 109.46947 * 179.97438 * 10 9 7 12 12 O 1.21276 * 120.00034 * 0.02562 * 11 10 9 13 13 N 1.34775 * 119.99931 * 179.97438 * 11 10 9 14 14 C 1.47426 * 125.64777 * 359.97438 * 13 11 10 15 15 C 1.54910 * 104.83209 * 155.89013 * 14 13 11 16 16 C 1.55154 * 101.58031 * 37.01037 * 15 14 13 17 17 H 1.08995 * 110.87338 * 82.93395 * 16 15 14 18 18 N 1.46903 * 110.71882 * 206.13764 * 16 15 14 19 19 C 1.46900 * 110.99935 * 199.97727 * 18 16 15 20 20 C 1.50697 * 109.47252 * 179.97438 * 19 18 16 21 21 Cl 1.73605 * 120.00102 * 295.00078 * 20 19 18 22 22 C 1.31294 * 119.99962 * 114.99602 * 20 19 18 23 23 Cl 1.73599 * 120.00192 * 0.02562 * 22 20 19 24 24 C 1.47019 * 125.65013 * 179.97438 * 13 11 10 25 25 H 0.96997 * 120.00069 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.47168 * 59.99910 * 10 9 7 27 27 H 1.08995 * 109.46843 * 299.99915 * 10 9 7 28 28 H 1.08998 * 110.36718 * 274.72906 * 14 13 11 29 29 H 1.09005 * 110.36600 * 37.05467 * 14 13 11 30 30 H 1.09002 * 111.00097 * 155.08840 * 15 14 13 31 31 H 1.08999 * 111.00452 * 278.93764 * 15 14 13 32 32 H 1.00890 * 111.00138 * 76.02145 * 18 16 15 33 33 H 1.09005 * 109.46976 * 300.00004 * 19 18 16 34 34 H 1.09002 * 109.47540 * 59.99668 * 19 18 16 35 35 H 1.08004 * 119.99812 * 179.97438 * 22 20 19 36 36 H 1.09001 * 109.88389 * 300.46361 * 24 13 11 37 37 H 1.09004 * 109.87600 * 61.47318 * 24 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0463 -1.4002 5 1 1.4478 2.6527 0.6999 6 1 3.5479 1.4402 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0001 9 16 1.1293 -2.7280 0.0005 10 6 2.5158 -3.8915 0.0005 11 6 1.9873 -5.3028 0.0012 12 8 0.7911 -5.5023 0.0011 13 7 2.8440 -6.3432 0.0008 14 6 4.3150 -6.2449 -0.0008 15 6 4.8024 -7.5820 0.6110 16 6 3.7728 -8.5853 0.0273 17 1 4.0563 -8.8909 -0.9798 18 7 3.6335 -9.7559 0.9038 19 6 3.0588 -10.8942 0.1744 20 6 2.9318 -12.0738 1.1036 21 17 4.3556 -12.8160 1.7638 22 6 1.7443 -12.5401 1.4140 23 17 0.3206 -11.7983 0.7535 24 6 2.4665 -7.7641 0.0018 25 1 -0.4850 0.8400 -0.0004 26 1 3.1245 -3.7314 0.8905 27 1 3.1244 -3.7314 -0.8894 28 1 4.6868 -6.1360 -1.0196 29 1 4.6398 -5.4056 0.6142 30 1 5.8123 -7.8195 0.2765 31 1 4.7490 -7.5561 1.6994 32 1 3.0825 -9.5335 1.7192 33 1 2.0737 -10.6225 -0.2052 34 1 3.7095 -11.1574 -0.6595 35 1 1.6534 -13.3858 2.0796 36 1 1.8700 -7.9885 0.8861 37 1 1.8972 -7.9970 -0.8981 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001181106706.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:11:09 Heat of formation + Delta-G solvation = -25.517980 kcal Electronic energy + Delta-G solvation = -21517.440257 eV Core-core repulsion = 17894.212837 eV Total energy + Delta-G solvation = -3623.227420 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 338.036 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.99313 -38.29832 -37.46451 -37.02506 -35.51925 -32.96865 -32.43618 -30.68605 -29.66413 -27.85481 -25.59664 -25.25370 -23.17908 -21.27934 -20.55287 -19.36686 -17.80827 -17.45649 -16.73872 -16.43172 -15.77118 -15.29953 -15.14557 -14.81098 -14.73353 -14.11221 -13.89342 -13.54288 -13.43369 -13.18317 -12.80404 -12.61194 -12.52963 -12.39539 -12.20512 -11.91298 -11.84421 -11.76135 -11.59559 -11.11391 -11.06891 -11.02664 -10.97119 -10.76597 -9.82736 -9.50067 -9.45822 -9.07312 -8.91897 -8.52992 -8.24391 -6.51413 -6.22298 -3.93168 0.94866 1.07344 2.31576 2.86234 3.04009 3.21885 3.24908 3.29747 3.53590 3.68816 4.03134 4.19334 4.30869 4.37841 4.65981 4.84356 4.96889 5.05214 5.06521 5.12356 5.13065 5.14719 5.29289 5.45771 5.51996 5.60114 5.60661 5.74865 5.83738 5.93100 6.12359 6.36052 6.46744 6.81843 7.58719 7.63214 8.34550 8.53212 9.22887 10.85160 Molecular weight = 338.04amu Principal moments of inertia in cm(-1) A = 0.024609 B = 0.002069 C = 0.001937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.532854 B =13528.243247 C =14450.898382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.534 4.534 8 H 0.073 0.927 9 S -0.062 6.062 10 C -0.146 4.146 11 C 0.547 3.453 12 O -0.516 6.516 13 N -0.624 5.624 14 C 0.098 3.902 15 C -0.118 4.118 16 C 0.078 3.922 17 H 0.098 0.902 18 N -0.666 5.666 19 C 0.080 3.920 20 C -0.057 4.057 21 Cl -0.043 7.043 22 C -0.099 4.099 23 Cl -0.055 7.055 24 C 0.082 3.918 25 H 0.268 0.732 26 H 0.089 0.911 27 H 0.089 0.911 28 H 0.070 0.930 29 H 0.082 0.918 30 H 0.088 0.912 31 H 0.082 0.918 32 H 0.349 0.651 33 H 0.069 0.931 34 H 0.096 0.904 35 H 0.160 0.840 36 H 0.065 0.935 37 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.584 -27.229 1.667 29.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.683 4.683 8 H 0.091 0.909 9 S 0.165 5.835 10 C -0.296 4.296 11 C 0.336 3.664 12 O -0.390 6.390 13 N -0.362 5.362 14 C -0.025 4.025 15 C -0.156 4.156 16 C -0.033 4.033 17 H 0.116 0.884 18 N -0.297 5.297 19 C -0.049 4.049 20 C -0.085 4.085 21 Cl -0.015 7.015 22 C -0.146 4.146 23 Cl -0.027 7.027 24 C -0.043 4.043 25 H 0.078 0.922 26 H 0.107 0.893 27 H 0.107 0.893 28 H 0.088 0.912 29 H 0.100 0.900 30 H 0.106 0.894 31 H 0.100 0.900 32 H 0.168 0.832 33 H 0.087 0.913 34 H 0.114 0.886 35 H 0.177 0.823 36 H 0.083 0.917 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 9.228 -27.554 1.579 29.101 hybrid contribution 1.055 1.438 -0.034 1.784 sum 10.283 -26.116 1.546 28.110 Atomic orbital electron populations 1.70018 1.05961 1.27467 1.46835 1.25001 0.95037 0.99047 0.94534 0.86160 0.79409 0.81530 0.78355 1.20260 1.20744 1.19675 1.22852 0.94886 0.91558 1.58975 0.90911 1.85412 1.04991 0.96393 1.96717 1.23499 1.06454 0.94856 1.04814 1.20080 0.85681 0.85505 0.75153 1.90709 1.15019 1.85157 1.48111 1.48419 1.06782 1.05162 1.75822 1.22364 0.80218 0.98721 1.01213 1.22772 0.98808 0.92488 1.01562 1.22686 0.94115 0.89229 0.97258 0.88440 1.60603 1.55325 1.04811 1.08925 1.21313 1.00957 0.87756 0.94852 1.23151 0.88011 0.97840 0.99535 1.98411 1.38189 1.80699 1.84156 1.24516 0.86789 1.01351 1.01944 1.98420 1.38131 1.81696 1.84461 1.22639 0.97480 0.82078 1.02107 0.92174 0.89260 0.89261 0.91223 0.90005 0.89363 0.89982 0.83173 0.91292 0.88589 0.82291 0.91710 0.91706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.23 13.22 55.49 0.73 -25.50 16 2 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 3 Si 0.92 21.40 29.55 -169.99 -5.02 16.37 16 4 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 6 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 7 C -0.53 -15.25 9.50 30.94 0.29 -14.95 16 8 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 9 S -0.06 -1.69 20.57 -107.50 -2.21 -3.91 16 10 C -0.15 -3.00 5.16 36.01 0.19 -2.81 16 11 C 0.55 10.64 7.87 -10.98 -0.09 10.55 16 12 O -0.52 -12.12 16.19 5.56 0.09 -12.03 16 13 N -0.62 -8.85 3.33 -170.52 -0.57 -9.41 16 14 C 0.10 1.00 6.69 -2.53 -0.02 0.98 16 15 C -0.12 -0.91 6.77 -24.58 -0.17 -1.08 16 16 C 0.08 0.62 3.24 -65.88 -0.21 0.40 16 17 H 0.10 0.69 7.89 -51.93 -0.41 0.28 16 18 N -0.67 -4.83 6.34 -106.06 -0.67 -5.50 16 19 C 0.08 0.53 5.71 -4.98 -0.03 0.50 16 20 C -0.06 -0.37 6.02 -36.10 -0.22 -0.59 16 21 Cl -0.04 -0.30 28.99 -51.86 -1.50 -1.80 16 22 C -0.10 -0.60 10.54 28.94 0.31 -0.29 16 23 Cl -0.06 -0.42 26.97 -51.86 -1.40 -1.82 16 24 C 0.08 0.95 6.52 -3.07 -0.02 0.93 16 25 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 26 H 0.09 1.70 7.85 -51.92 -0.41 1.29 16 27 H 0.09 1.70 8.14 -51.92 -0.42 1.28 16 28 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.08 0.83 7.48 -51.93 -0.39 0.44 16 30 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.35 2.67 8.15 -39.30 -0.32 2.35 16 33 H 0.07 0.49 6.00 -51.93 -0.31 0.18 16 34 H 0.10 0.58 8.09 -51.93 -0.42 0.16 16 35 H 0.16 0.70 8.06 -52.48 -0.42 0.27 16 36 H 0.06 0.80 7.57 -51.93 -0.39 0.40 16 37 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 357.90 15.07 5.39 5.39 Total: -1.00 -33.94 357.90 -9.95 -43.89 By element: Atomic # 1 Polarization: 3.40 SS G_CDS: -4.73 Total: -1.33 kcal Atomic # 6 Polarization: -4.30 SS G_CDS: -0.06 Total: -4.36 kcal Atomic # 7 Polarization: -39.91 SS G_CDS: -0.51 Total: -40.42 kcal Atomic # 8 Polarization: -12.12 SS G_CDS: 0.09 Total: -12.03 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.91 kcal Atomic # 17 Polarization: -0.71 SS G_CDS: -2.90 Total: -3.62 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -33.94 -9.95 -43.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181106706.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.370 kcal (2) G-P(sol) polarization free energy of solvation -33.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds