Wall clock time and date at job start Tue Mar 31 2020 21:11:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86799 * 120.00146 * 2 1 4 4 H 1.48510 * 109.46839 * 269.99585 * 3 2 1 5 5 H 1.48497 * 109.47410 * 29.99480 * 3 2 1 6 6 H 1.48499 * 109.47405 * 150.00186 * 3 2 1 7 7 C 1.38805 * 120.00022 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99791 * 179.97438 * 7 2 1 9 9 S 1.76200 * 119.99809 * 0.02562 * 7 2 1 10 10 C 1.81002 * 99.99831 * 179.97438 * 9 7 2 11 11 C 1.50705 * 109.46947 * 179.97438 * 10 9 7 12 12 O 1.21276 * 120.00034 * 0.02562 * 11 10 9 13 13 N 1.34775 * 119.99931 * 179.97438 * 11 10 9 14 14 C 1.47426 * 125.64777 * 359.97438 * 13 11 10 15 15 C 1.54910 * 104.83209 * 155.89013 * 14 13 11 16 16 C 1.55154 * 101.58031 * 37.01037 * 15 14 13 17 17 H 1.08995 * 110.87338 * 82.93395 * 16 15 14 18 18 N 1.46903 * 110.71882 * 206.13764 * 16 15 14 19 19 C 1.46900 * 110.99935 * 199.97727 * 18 16 15 20 20 C 1.50697 * 109.47252 * 179.97438 * 19 18 16 21 21 Cl 1.73605 * 120.00102 * 295.00078 * 20 19 18 22 22 C 1.31294 * 119.99962 * 114.99602 * 20 19 18 23 23 Cl 1.73599 * 120.00192 * 0.02562 * 22 20 19 24 24 C 1.47019 * 125.65013 * 179.97438 * 13 11 10 25 25 H 0.96997 * 120.00069 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.47168 * 59.99910 * 10 9 7 27 27 H 1.08995 * 109.46843 * 299.99915 * 10 9 7 28 28 H 1.08998 * 110.36718 * 274.72906 * 14 13 11 29 29 H 1.09005 * 110.36600 * 37.05467 * 14 13 11 30 30 H 1.09002 * 111.00097 * 155.08840 * 15 14 13 31 31 H 1.08999 * 111.00452 * 278.93764 * 15 14 13 32 32 H 1.00890 * 111.00138 * 76.02145 * 18 16 15 33 33 H 1.09005 * 109.46976 * 300.00004 * 19 18 16 34 34 H 1.09002 * 109.47540 * 59.99668 * 19 18 16 35 35 H 1.08004 * 119.99812 * 179.97438 * 22 20 19 36 36 H 1.09001 * 109.88389 * 300.46361 * 24 13 11 37 37 H 1.09004 * 109.87600 * 61.47318 * 24 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0463 -1.4002 5 1 1.4478 2.6527 0.6999 6 1 3.5479 1.4402 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0001 9 16 1.1293 -2.7280 0.0005 10 6 2.5158 -3.8915 0.0005 11 6 1.9873 -5.3028 0.0012 12 8 0.7911 -5.5023 0.0011 13 7 2.8440 -6.3432 0.0008 14 6 4.3150 -6.2449 -0.0008 15 6 4.8024 -7.5820 0.6110 16 6 3.7728 -8.5853 0.0273 17 1 4.0563 -8.8909 -0.9798 18 7 3.6335 -9.7559 0.9038 19 6 3.0588 -10.8942 0.1744 20 6 2.9318 -12.0738 1.1036 21 17 4.3556 -12.8160 1.7638 22 6 1.7443 -12.5401 1.4140 23 17 0.3206 -11.7983 0.7535 24 6 2.4665 -7.7641 0.0018 25 1 -0.4850 0.8400 -0.0004 26 1 3.1245 -3.7314 0.8905 27 1 3.1244 -3.7314 -0.8894 28 1 4.6868 -6.1360 -1.0196 29 1 4.6398 -5.4056 0.6142 30 1 5.8123 -7.8195 0.2765 31 1 4.7490 -7.5561 1.6994 32 1 3.0825 -9.5335 1.7192 33 1 2.0737 -10.6225 -0.2052 34 1 3.7095 -11.1574 -0.6595 35 1 1.6534 -13.3858 2.0796 36 1 1.8700 -7.9885 0.8861 37 1 1.8972 -7.9970 -0.8981 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001181106706.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:11:08 Heat of formation + Delta-G solvation = -48.606820 kcal Electronic energy + Delta-G solvation = -21518.441465 eV Core-core repulsion = 17894.212837 eV Total energy + Delta-G solvation = -3624.228628 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 338.036 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.13632 -39.20212 -38.30508 -37.56768 -36.30194 -34.59734 -33.71508 -31.74265 -30.84641 -28.85599 -27.66957 -26.07062 -24.12850 -21.97791 -21.11528 -20.73982 -19.59590 -18.19468 -18.07399 -17.39252 -16.89349 -16.64886 -16.35723 -16.10352 -15.71981 -15.58116 -15.11496 -14.53072 -14.44812 -14.07706 -13.90088 -13.68792 -13.62099 -13.28070 -13.16212 -13.10037 -12.89397 -12.77446 -12.62956 -12.57043 -12.45784 -12.17352 -11.81220 -11.70117 -11.54989 -11.15087 -11.02826 -10.29944 -10.00975 -9.79003 -9.50746 -8.69941 -8.35616 -6.14720 0.44809 0.54839 1.22518 1.42499 1.44234 1.52733 1.55818 1.80694 2.05400 2.26385 2.98531 2.99524 3.23595 3.43329 3.60692 3.65709 3.89278 4.02137 4.19971 4.21597 4.33263 4.37965 4.43061 4.50188 4.61206 4.66109 4.71742 4.79962 4.83145 5.09663 5.20351 5.32687 5.40757 5.83398 6.17851 6.18881 6.34831 7.05356 7.07850 8.73749 Molecular weight = 338.04amu Principal moments of inertia in cm(-1) A = 0.024609 B = 0.002069 C = 0.001937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.532854 B =13528.243247 C =14450.898382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.012 3.988 3 Si 1.001 2.999 4 H -0.267 1.267 5 H -0.278 1.278 6 H -0.257 1.257 7 C -0.544 4.544 8 H 0.084 0.916 9 S -0.155 6.155 10 C -0.118 4.118 11 C 0.543 3.457 12 O -0.570 6.570 13 N -0.614 5.614 14 C 0.088 3.912 15 C -0.106 4.106 16 C 0.093 3.907 17 H 0.115 0.885 18 N -0.661 5.661 19 C 0.080 3.920 20 C -0.060 4.060 21 Cl -0.044 7.044 22 C -0.094 4.094 23 Cl -0.071 7.071 24 C 0.079 3.921 25 H 0.271 0.729 26 H 0.107 0.893 27 H 0.108 0.892 28 H 0.089 0.911 29 H 0.085 0.915 30 H 0.116 0.884 31 H 0.079 0.921 32 H 0.347 0.653 33 H 0.063 0.937 34 H 0.106 0.894 35 H 0.177 0.823 36 H 0.053 0.947 37 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.765 -27.936 1.648 31.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.193 4.193 3 Si 0.822 3.178 4 H -0.192 1.192 5 H -0.203 1.203 6 H -0.181 1.181 7 C -0.692 4.692 8 H 0.102 0.898 9 S 0.073 5.927 10 C -0.269 4.269 11 C 0.331 3.669 12 O -0.449 6.449 13 N -0.349 5.349 14 C -0.034 4.034 15 C -0.144 4.144 16 C -0.018 4.018 17 H 0.133 0.867 18 N -0.291 5.291 19 C -0.049 4.049 20 C -0.089 4.089 21 Cl -0.015 7.015 22 C -0.140 4.140 23 Cl -0.043 7.043 24 C -0.046 4.046 25 H 0.080 0.920 26 H 0.125 0.875 27 H 0.126 0.874 28 H 0.107 0.893 29 H 0.103 0.897 30 H 0.134 0.866 31 H 0.098 0.902 32 H 0.166 0.834 33 H 0.081 0.919 34 H 0.124 0.876 35 H 0.194 0.806 36 H 0.072 0.928 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 12.472 -28.312 1.562 30.977 hybrid contribution 0.125 1.484 -0.019 1.489 sum 12.596 -26.829 1.543 29.679 Atomic orbital electron populations 1.70188 1.08031 1.28645 1.47976 1.26165 0.95991 1.03410 0.93696 0.84926 0.78207 0.75838 0.78839 1.19241 1.20326 1.18055 1.23181 0.95334 0.91751 1.58933 0.89801 1.85616 1.10662 0.99421 1.97046 1.23288 1.03347 0.93793 1.06454 1.19857 0.85455 0.86140 0.75409 1.90685 1.17257 1.85837 1.51102 1.48366 1.08287 1.05161 1.73108 1.22751 0.77325 1.00509 1.02817 1.22755 0.99827 0.90524 1.01285 1.22658 0.91836 0.88911 0.98430 0.86676 1.60657 1.55163 1.04546 1.08690 1.21336 1.00856 0.87556 0.95127 1.23108 0.88043 0.97946 0.99774 1.98413 1.38191 1.80736 1.84196 1.24710 0.86068 1.01495 1.01738 1.98424 1.39075 1.82035 1.84735 1.22884 0.99646 0.80923 1.01188 0.91979 0.87462 0.87411 0.89295 0.89683 0.86591 0.90233 0.83415 0.91900 0.87586 0.80622 0.92815 0.92619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.40 13.22 21.65 0.29 -56.11 16 2 C 0.01 0.69 5.49 84.86 0.47 1.15 16 3 Si 1.00 43.57 29.55 68.60 2.03 45.60 16 4 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 5 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 6 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 7 C -0.54 -31.22 9.50 67.96 0.65 -30.57 16 8 H 0.08 4.44 7.80 -2.91 -0.02 4.42 16 9 S -0.15 -8.75 20.57 -56.49 -1.16 -9.91 16 10 C -0.12 -4.81 5.16 71.24 0.37 -4.44 16 11 C 0.54 21.26 7.87 87.66 0.69 21.95 16 12 O -0.57 -27.86 16.19 -3.02 -0.05 -27.91 16 13 N -0.61 -16.72 3.33 -811.79 -2.70 -19.42 16 14 C 0.09 1.53 6.69 86.86 0.58 2.11 16 15 C -0.11 -1.26 6.77 31.99 0.22 -1.05 16 16 C 0.09 1.22 3.24 46.10 0.15 1.37 16 17 H 0.12 1.21 7.89 -2.39 -0.02 1.19 16 18 N -0.66 -8.12 6.34 -489.45 -3.11 -11.22 16 19 C 0.08 0.91 5.71 85.56 0.49 1.40 16 20 C -0.06 -0.68 6.02 25.36 0.15 -0.53 16 21 Cl -0.04 -0.52 28.99 -2.72 -0.08 -0.60 16 22 C -0.09 -1.00 10.54 67.49 0.71 -0.29 16 23 Cl -0.07 -1.04 26.97 -2.72 -0.07 -1.11 16 24 C 0.08 1.74 6.52 86.73 0.57 2.31 16 25 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 26 H 0.11 3.96 7.85 -2.39 -0.02 3.95 16 27 H 0.11 3.97 8.14 -2.40 -0.02 3.95 16 28 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.08 1.47 7.48 -2.38 -0.02 1.46 16 30 H 0.12 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.35 4.75 8.15 -89.70 -0.73 4.02 16 33 H 0.06 0.83 6.00 -2.38 -0.01 0.81 16 34 H 0.11 1.02 8.09 -2.39 -0.02 1.00 16 35 H 0.18 1.24 8.06 -2.91 -0.02 1.22 16 36 H 0.05 1.32 7.57 -2.39 -0.02 1.31 16 37 H 0.06 1.35 8.14 -2.38 -0.02 1.33 16 Total: -1.00 -76.53 357.90 0.55 -75.99 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: 0.37 Total: 11.29 kcal Atomic # 6 Polarization: -11.62 SS G_CDS: 5.03 Total: -6.59 kcal Atomic # 7 Polarization: -81.24 SS G_CDS: -5.52 Total: -86.75 kcal Atomic # 8 Polarization: -27.86 SS G_CDS: -0.05 Total: -27.91 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Atomic # 16 Polarization: -8.75 SS G_CDS: -1.16 Total: -9.91 kcal Atomic # 17 Polarization: -1.56 SS G_CDS: -0.15 Total: -1.71 kcal Total: -76.53 0.55 -75.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181106706.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.379 kcal (2) G-P(sol) polarization free energy of solvation -76.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds