Wall clock time and date at job start Tue Mar 31 2020 21:11:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31638 * 1 3 3 Si 1.86795 * 119.99695 * 2 1 4 4 H 1.48498 * 109.47388 * 240.00263 * 3 2 1 5 5 H 1.48498 * 109.47314 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47063 * 120.00666 * 3 2 1 7 7 C 1.38800 * 119.99962 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99971 * 179.97438 * 7 2 1 9 9 S 1.76194 * 120.00077 * 359.97438 * 7 2 1 10 10 C 1.81002 * 99.99981 * 180.02562 * 9 7 2 11 11 C 1.50700 * 109.46833 * 180.02562 * 10 9 7 12 12 O 1.21280 * 120.00561 * 359.97438 * 11 10 9 13 13 N 1.34786 * 119.99814 * 180.02562 * 11 10 9 14 14 C 1.47019 * 125.64350 * 0.03053 * 13 11 10 15 15 C 1.54332 * 107.26809 * 181.02963 * 14 13 11 16 16 C 1.55157 * 102.94104 * 22.19421 * 15 14 13 17 17 H 1.09002 * 111.00367 * 82.57305 * 16 15 14 18 18 N 1.46900 * 111.03514 * 206.41030 * 16 15 14 19 19 C 1.46905 * 110.99908 * 201.79839 * 18 16 15 20 20 C 1.50692 * 109.46969 * 180.02562 * 19 18 16 21 21 C 1.31330 * 120.00046 * 125.00355 * 20 19 18 22 22 Cl 1.73603 * 120.00201 * 359.97438 * 21 20 19 23 23 Cl 1.73604 * 119.99940 * 179.97438 * 21 20 19 24 24 C 1.47418 * 125.65024 * 179.97438 * 13 11 10 25 25 H 0.96996 * 119.99576 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.47346 * 59.99836 * 10 9 7 27 27 H 1.09000 * 109.46617 * 299.99414 * 10 9 7 28 28 H 1.08993 * 109.88762 * 300.44792 * 14 13 11 29 29 H 1.09000 * 109.88235 * 61.61437 * 14 13 11 30 30 H 1.09000 * 110.72090 * 263.83388 * 15 14 13 31 31 H 1.08996 * 110.72335 * 140.56189 * 15 14 13 32 32 H 1.00904 * 111.00167 * 77.84696 * 18 16 15 33 33 H 1.09002 * 109.46619 * 300.00149 * 19 18 16 34 34 H 1.09000 * 109.46874 * 59.99630 * 19 18 16 35 35 H 1.08003 * 120.00020 * 304.99739 * 20 19 18 36 36 H 1.09003 * 110.36673 * 37.06281 * 24 13 11 37 37 H 1.08997 * 110.36612 * 274.74555 * 24 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1042 1.6964 1.2124 7 6 2.0104 -1.2021 -0.0005 8 1 3.0904 -1.2021 -0.0010 9 16 1.1294 -2.7279 -0.0005 10 6 2.5160 -3.8914 -0.0005 11 6 1.9875 -5.3027 -0.0012 12 8 0.7912 -5.5023 -0.0011 13 7 2.8443 -6.3431 -0.0008 14 6 4.3112 -6.2450 0.0009 15 6 4.8667 -7.6846 -0.0257 16 6 3.6854 -8.5021 -0.6120 17 1 3.6719 -8.4435 -1.7004 18 7 3.7374 -9.8999 -0.1633 19 6 2.9840 -10.7733 -1.0731 20 6 3.0595 -12.1956 -0.5812 21 6 1.9565 -12.8744 -0.3630 22 17 0.4116 -12.1328 -0.6405 23 17 2.0435 -14.5132 0.2031 24 6 2.4657 -7.7679 -0.0008 25 1 -0.4849 0.8400 0.0004 26 1 3.1246 -3.7313 0.8894 27 1 3.1245 -3.7313 -0.8906 28 1 4.6474 -5.7016 -0.8820 29 1 4.6475 -5.7345 0.9034 30 1 5.1077 -8.0237 0.9818 31 1 5.7400 -7.7491 -0.6747 32 1 3.4011 -9.9884 0.7840 33 1 1.9421 -10.4543 -1.1031 34 1 3.4119 -10.7111 -2.0737 35 1 4.0206 -12.6570 -0.4082 36 1 1.5804 -7.9252 -0.6169 37 1 2.2863 -8.1127 1.0175 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001181106714.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:11:11 Heat of formation + Delta-G solvation = -49.444686 kcal Electronic energy + Delta-G solvation = -21295.781496 eV Core-core repulsion = 17671.516536 eV Total energy + Delta-G solvation = -3624.264960 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 338.036 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.12491 -39.14537 -38.43511 -37.56734 -36.60071 -34.59557 -33.85903 -31.71898 -30.81844 -28.78377 -27.66000 -25.82003 -24.11737 -21.98904 -21.21316 -20.73458 -19.58385 -18.25886 -18.07172 -17.45225 -16.89171 -16.74832 -16.32951 -16.01172 -15.82410 -15.61545 -15.04082 -14.55539 -14.48840 -14.17183 -13.98253 -13.73088 -13.53455 -13.37501 -13.17286 -13.04506 -12.86783 -12.64552 -12.61871 -12.50493 -12.48332 -12.10732 -11.98843 -11.77293 -11.68412 -11.13514 -11.03451 -10.30521 -10.09273 -9.78466 -9.49547 -8.69987 -8.35362 -6.14673 0.33614 0.45781 1.22300 1.38123 1.43991 1.44293 1.52069 1.54674 2.04737 2.26677 2.98643 3.05367 3.25682 3.50750 3.65813 3.89227 3.93408 4.04472 4.19688 4.26146 4.33191 4.36937 4.43194 4.47586 4.60249 4.73951 4.81283 4.84014 4.99819 5.10424 5.22275 5.31880 5.40469 5.85157 6.18651 6.25027 6.34456 7.05376 7.07180 8.73687 Molecular weight = 338.04amu Principal moments of inertia in cm(-1) A = 0.029523 B = 0.001875 C = 0.001780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.192397 B =14927.099778 C =15726.603434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.012 3.988 3 Si 1.000 3.000 4 H -0.261 1.261 5 H -0.279 1.279 6 H -0.261 1.261 7 C -0.546 4.546 8 H 0.084 0.916 9 S -0.154 6.154 10 C -0.118 4.118 11 C 0.544 3.456 12 O -0.570 6.570 13 N -0.615 5.615 14 C 0.088 3.912 15 C -0.103 4.103 16 C 0.089 3.911 17 H 0.102 0.898 18 N -0.657 5.657 19 C 0.074 3.926 20 C -0.088 4.088 21 C -0.058 4.058 22 Cl -0.051 7.051 23 Cl -0.041 7.041 24 C 0.075 3.925 25 H 0.271 0.729 26 H 0.107 0.893 27 H 0.108 0.892 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.092 0.908 31 H 0.110 0.890 32 H 0.351 0.649 33 H 0.045 0.955 34 H 0.109 0.891 35 H 0.169 0.831 36 H 0.054 0.946 37 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.392 -28.027 -1.324 31.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.192 4.192 3 Si 0.821 3.179 4 H -0.185 1.185 5 H -0.204 1.204 6 H -0.186 1.186 7 C -0.694 4.694 8 H 0.102 0.898 9 S 0.073 5.927 10 C -0.270 4.270 11 C 0.332 3.668 12 O -0.449 6.449 13 N -0.350 5.350 14 C -0.034 4.034 15 C -0.141 4.141 16 C -0.022 4.022 17 H 0.120 0.880 18 N -0.287 5.287 19 C -0.055 4.055 20 C -0.108 4.108 21 C -0.112 4.112 22 Cl -0.024 7.024 23 Cl -0.012 7.012 24 C -0.050 4.050 25 H 0.080 0.920 26 H 0.125 0.875 27 H 0.126 0.874 28 H 0.099 0.901 29 H 0.097 0.903 30 H 0.110 0.890 31 H 0.129 0.871 32 H 0.170 0.830 33 H 0.063 0.937 34 H 0.127 0.873 35 H 0.187 0.813 36 H 0.073 0.927 37 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 12.918 -28.401 -1.600 31.241 hybrid contribution -0.050 1.364 0.346 1.408 sum 12.868 -27.037 -1.253 29.969 Atomic orbital electron populations 1.70186 1.08023 1.28708 1.47885 1.26166 0.95993 1.03406 0.93673 0.84981 0.77786 0.75511 0.79580 1.18526 1.20431 1.18568 1.23157 0.95355 0.91789 1.59074 0.89784 1.85609 1.10625 0.99388 1.97055 1.23291 1.03363 0.93829 1.06470 1.19841 0.85451 0.86137 0.75346 1.90687 1.17220 1.85806 1.51148 1.48330 1.08160 1.05310 1.73171 1.22447 0.77451 1.00203 1.03292 1.22608 0.97669 0.90058 1.03771 1.22734 0.92433 0.86794 1.00269 0.87981 1.60577 1.57553 1.04280 1.06317 1.21314 0.97865 0.88166 0.98164 1.23295 0.96898 0.95831 0.94815 1.24279 0.88740 0.88860 1.09288 1.98443 1.29541 1.79662 1.94706 1.98433 1.97581 1.17721 1.87501 1.23140 0.99980 0.80726 1.01137 0.91978 0.87487 0.87396 0.90107 0.90269 0.88971 0.87133 0.82976 0.93719 0.87303 0.81335 0.92699 0.91285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.30 13.22 21.65 0.29 -56.02 16 2 C 0.01 0.70 5.49 84.86 0.47 1.17 16 3 Si 1.00 43.44 29.55 68.60 2.03 45.47 16 4 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 5 H -0.28 -11.84 7.11 99.48 0.71 -11.14 16 6 H -0.26 -10.72 7.11 99.48 0.71 -10.02 16 7 C -0.55 -31.28 9.50 67.95 0.65 -30.63 16 8 H 0.08 4.43 7.80 -2.91 -0.02 4.41 16 9 S -0.15 -8.69 20.57 -56.49 -1.16 -9.85 16 10 C -0.12 -4.83 5.35 71.24 0.38 -4.44 16 11 C 0.54 21.17 7.87 87.66 0.69 21.86 16 12 O -0.57 -27.73 16.12 -3.03 -0.05 -27.78 16 13 N -0.61 -16.56 3.33 -811.76 -2.70 -19.26 16 14 C 0.09 1.52 6.49 86.73 0.56 2.08 16 15 C -0.10 -1.08 6.65 31.79 0.21 -0.87 16 16 C 0.09 1.14 3.34 46.31 0.15 1.30 16 17 H 0.10 1.29 7.87 -2.39 -0.02 1.27 16 18 N -0.66 -6.49 6.38 -488.37 -3.12 -9.61 16 19 C 0.07 0.73 5.86 85.55 0.50 1.23 16 20 C -0.09 -0.79 9.51 25.32 0.24 -0.55 16 21 C -0.06 -0.71 6.97 67.46 0.47 -0.24 16 22 Cl -0.05 -0.82 26.92 -2.72 -0.07 -0.89 16 23 Cl -0.04 -0.51 29.06 -2.72 -0.08 -0.59 16 24 C 0.07 1.62 6.51 86.86 0.57 2.19 16 25 H 0.27 15.57 8.31 -92.71 -0.77 14.79 16 26 H 0.11 3.95 8.14 -2.40 -0.02 3.93 16 27 H 0.11 3.96 8.14 -2.40 -0.02 3.94 16 28 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.35 3.42 8.24 -89.69 -0.74 2.68 16 33 H 0.04 0.59 6.01 -2.39 -0.01 0.58 16 34 H 0.11 0.89 8.09 -2.39 -0.02 0.87 16 35 H 0.17 0.98 8.06 -2.91 -0.02 0.95 16 36 H 0.05 1.44 8.04 -2.39 -0.02 1.42 16 37 H 0.07 1.44 7.77 -2.39 -0.02 1.43 16 Total: -1.00 -76.56 359.05 0.38 -76.18 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: 0.36 Total: 9.26 kcal Atomic # 6 Polarization: -11.80 SS G_CDS: 4.89 Total: -6.91 kcal Atomic # 7 Polarization: -79.36 SS G_CDS: -5.53 Total: -84.89 kcal Atomic # 8 Polarization: -27.73 SS G_CDS: -0.05 Total: -27.78 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Atomic # 16 Polarization: -8.69 SS G_CDS: -1.16 Total: -9.85 kcal Atomic # 17 Polarization: -1.33 SS G_CDS: -0.15 Total: -1.48 kcal Total: -76.56 0.38 -76.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181106714.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.739 kcal (2) G-P(sol) polarization free energy of solvation -76.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds