Wall clock time and date at job start Tue Mar 31 2020 20:06:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.43198 * 119.99859 * 224.80413 * 3 2 1 5 5 N 3.51034 * 140.69042 * 224.80465 * 2 1 3 6 6 C 1.41151 * 119.99947 * 44.80646 * 3 2 1 7 7 C 1.38987 * 119.99963 * 7.29167 * 6 3 2 8 8 H 1.08004 * 120.00045 * 223.31133 * 7 6 3 9 9 C 1.40811 * 120.00194 * 43.31343 * 7 6 3 10 10 N 1.30342 * 120.00013 * 16.45578 * 9 7 6 11 11 Si 1.86804 * 120.00115 * 196.46134 * 9 7 6 12 12 H 1.48496 * 109.47076 * 59.99731 * 11 9 7 13 13 H 1.48503 * 109.47245 * 180.02562 * 11 9 7 14 14 H 1.48497 * 109.46926 * 299.99722 * 11 9 7 15 15 N 1.38230 * 120.00084 * 187.28804 * 6 3 2 16 16 S 1.65604 * 120.00255 * 184.94343 * 15 6 3 17 17 O 1.42102 * 106.40300 * 311.64794 * 16 15 6 18 18 O 1.42100 * 106.40282 * 178.72620 * 16 15 6 19 19 C 1.76200 * 107.21494 * 65.18889 * 16 15 6 20 20 C 1.38707 * 120.40583 * 85.95720 * 19 16 15 21 21 C 1.38571 * 118.43759 * 180.02562 * 20 19 16 22 22 C 1.38398 * 119.14728 * 0.02562 * 21 20 19 23 23 Cl 1.73598 * 119.63096 * 179.97438 * 22 21 20 24 24 N 1.31947 * 120.73393 * 359.97438 * 22 21 20 25 25 C 1.31910 * 121.70213 * 0.04569 * 24 22 21 26 26 H 0.97002 * 120.00188 * 184.93591 * 10 9 7 27 27 H 0.97003 * 120.00070 * 4.95162 * 15 6 3 28 28 H 1.07996 * 120.78359 * 359.97438 * 20 19 16 29 29 H 1.08002 * 120.42216 * 179.72639 * 21 20 19 30 30 H 1.07999 * 119.60358 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2836 0.8809 0.8739 5 7 3.8520 1.5778 1.5671 6 6 3.2741 -0.8663 -0.8615 7 6 2.5879 -1.6095 -1.8146 8 1 2.8382 -2.6483 -1.9723 9 6 1.5665 -1.0082 -2.5749 10 7 1.4723 0.2908 -2.6279 11 14 0.3465 -2.0720 -3.5072 12 1 -0.3833 -2.9425 -2.5508 13 1 -0.6212 -1.2031 -4.2241 14 1 1.0744 -2.9160 -4.4885 15 7 4.6481 -0.9762 -0.7571 16 16 5.4901 -1.8979 -1.8453 17 8 4.8095 -3.1425 -1.9284 18 8 6.8616 -1.7841 -1.4911 19 6 5.3182 -1.1304 -3.4220 20 6 6.1820 -0.1156 -3.8068 21 6 6.0094 0.4598 -5.0555 22 6 4.9876 0.0061 -5.8713 23 17 4.7597 0.7185 -7.4379 24 7 4.1849 -0.9617 -5.4716 25 6 4.3205 -1.5311 -4.2895 26 1 0.7277 0.7045 -3.0920 27 1 5.1191 -0.5135 -0.0465 28 1 6.9699 0.2189 -3.1483 29 1 6.6609 1.2553 -5.3858 30 1 3.6440 -2.3203 -3.9967 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185696880.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:06:49 Heat of formation + Delta-G solvation = -0.029399 kcal Electronic energy + Delta-G solvation = -24372.831613 eV Core-core repulsion = 20513.768872 eV Total energy + Delta-G solvation = -3859.062741 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 338.003 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.28481 -39.33308 -38.33671 -37.83776 -37.05578 -36.73708 -36.56930 -35.14513 -33.89252 -32.40560 -31.36473 -28.80163 -25.16424 -25.00606 -23.75059 -21.47433 -20.22374 -19.74120 -19.14136 -18.49662 -18.05199 -18.02085 -17.53058 -16.90420 -16.05682 -15.66800 -15.63122 -15.03923 -14.91041 -14.50516 -14.36559 -14.29654 -14.01793 -13.90408 -13.54477 -13.41579 -13.33398 -13.30903 -13.18821 -12.95239 -12.86166 -12.70566 -12.65612 -12.51364 -12.27791 -12.20075 -11.85514 -11.30073 -11.14426 -10.81019 -10.37886 -9.12639 -8.95222 -7.15334 -0.91718 -0.56015 0.02590 0.57636 0.67591 1.38185 1.46917 1.48259 1.74187 2.00383 2.08526 2.27848 2.28925 2.53404 2.58319 2.74418 3.17629 3.31010 3.45286 3.71802 3.75413 3.80384 3.95574 4.22118 4.48127 4.52892 4.57067 4.69460 4.89752 5.24331 5.32035 5.75799 6.06885 6.31350 6.40237 6.43125 7.08596 7.41736 7.86869 Molecular weight = 338.00amu Principal moments of inertia in cm(-1) A = 0.010364 B = 0.006203 C = 0.005004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2701.075635 B = 4513.051876 C = 5594.166963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C 0.350 3.650 3 C -0.269 4.269 4 C 0.308 3.692 5 N -0.536 5.536 6 C 0.429 3.571 7 C -0.506 4.506 8 H 0.152 0.848 9 C 0.080 3.920 10 N -0.740 5.740 11 Si 0.927 3.073 12 H -0.260 1.260 13 H -0.275 1.275 14 H -0.226 1.226 15 N -1.039 6.039 16 S 2.725 3.275 17 O -0.949 6.949 18 O -0.962 6.962 19 C -0.725 4.725 20 C 0.039 3.961 21 C -0.173 4.173 22 C 0.211 3.789 23 Cl -0.016 7.016 24 N -0.515 5.515 25 C 0.235 3.765 26 H 0.301 0.699 27 H 0.425 0.575 28 H 0.188 0.812 29 H 0.188 0.812 30 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.926 -2.238 -10.128 14.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.234 5.234 2 C 0.041 3.959 3 C -0.289 4.289 4 C 0.001 3.999 5 N -0.219 5.219 6 C 0.320 3.680 7 C -0.537 4.537 8 H 0.169 0.831 9 C -0.150 4.150 10 N -0.359 5.359 11 Si 0.747 3.253 12 H -0.184 1.184 13 H -0.200 1.200 14 H -0.148 1.148 15 N -0.782 5.782 16 S 2.816 3.184 17 O -0.940 6.940 18 O -0.952 6.952 19 C -0.815 4.815 20 C 0.013 3.987 21 C -0.194 4.194 22 C 0.047 3.953 23 Cl 0.013 6.987 24 N -0.227 5.227 25 C 0.077 3.923 26 H 0.113 0.887 27 H 0.261 0.739 28 H 0.205 0.795 29 H 0.206 0.794 30 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 8.831 -1.995 -9.865 13.390 hybrid contribution -0.329 0.808 -0.309 0.925 sum 8.503 -1.187 -10.174 13.312 Atomic orbital electron populations 1.80965 1.13018 1.14030 1.15420 1.24562 0.91477 0.90481 0.89342 1.12722 0.83074 1.17964 1.15166 1.25332 0.92513 0.90946 0.91083 1.81088 1.10329 1.14992 1.15476 1.16688 0.79481 0.85730 0.86068 1.20360 1.16597 1.01157 1.15613 0.83079 1.26314 0.97237 0.95685 0.95800 1.69465 1.26611 1.11719 1.28148 0.85960 0.79135 0.80294 0.79868 1.18437 1.19988 1.14813 1.53841 1.15053 1.65176 1.44097 1.01059 0.71689 0.72934 0.72720 1.93558 1.74352 1.39911 1.86138 1.93588 1.31831 1.86666 1.83121 1.31650 1.08840 1.16100 1.24894 1.21751 0.93919 0.87823 0.95234 1.22226 0.99440 1.03451 0.94251 1.22377 0.91858 0.91749 0.89295 1.98419 1.96605 1.80181 1.23509 1.67167 1.27167 1.10302 1.18047 1.22717 0.90602 0.93569 0.85457 0.88681 0.73874 0.79495 0.79432 0.79956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.55 -26.52 18.54 19.00 0.35 -26.17 16 2 C 0.35 16.06 11.68 88.33 1.03 17.09 16 3 C -0.27 -11.22 5.35 -20.07 -0.11 -11.33 16 4 C 0.31 12.77 14.12 88.34 1.25 14.02 16 5 N -0.54 -22.77 18.53 19.00 0.35 -22.42 16 6 C 0.43 16.06 6.12 39.03 0.24 16.30 16 7 C -0.51 -19.16 4.89 23.08 0.11 -19.05 16 8 H 0.15 5.40 5.34 -2.91 -0.02 5.38 16 9 C 0.08 3.14 3.74 85.54 0.32 3.46 16 10 N -0.74 -30.80 11.17 21.97 0.25 -30.55 16 11 Si 0.93 32.83 29.60 68.60 2.03 34.86 16 12 H -0.26 -9.62 7.11 99.48 0.71 -8.92 16 13 H -0.28 -9.97 7.11 99.48 0.71 -9.26 16 14 H -0.23 -7.15 7.11 99.48 0.71 -6.44 16 15 N -1.04 -32.12 5.73 -50.80 -0.29 -32.42 16 16 S 2.73 78.05 5.36 -56.49 -0.30 77.74 16 17 O -0.95 -30.56 14.42 -128.00 -1.85 -32.40 16 18 O -0.96 -28.10 17.47 -128.00 -2.24 -30.33 16 19 C -0.73 -19.80 5.69 22.36 0.13 -19.67 16 20 C 0.04 0.86 9.65 22.46 0.22 1.08 16 21 C -0.17 -3.55 9.88 22.39 0.22 -3.32 16 22 C 0.21 5.44 7.27 84.71 0.62 6.05 16 23 Cl -0.02 -0.35 29.11 -2.72 -0.08 -0.43 16 24 N -0.51 -15.73 10.34 -186.69 -1.93 -17.66 16 25 C 0.23 7.11 9.15 84.66 0.77 7.89 16 26 H 0.30 12.31 8.29 -92.71 -0.77 11.55 16 27 H 0.42 11.94 7.72 -96.74 -0.75 11.20 16 28 H 0.19 2.91 7.80 -2.91 -0.02 2.89 16 29 H 0.19 2.39 8.06 -2.91 -0.02 2.36 16 30 H 0.18 5.52 6.13 -2.91 -0.02 5.50 16 Total: -1.00 -54.62 312.47 1.62 -53.00 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: 0.53 Total: 14.26 kcal Atomic # 6 Polarization: 7.72 SS G_CDS: 4.80 Total: 12.52 kcal Atomic # 7 Polarization: -127.94 SS G_CDS: -1.27 Total: -129.21 kcal Atomic # 8 Polarization: -58.65 SS G_CDS: -4.08 Total: -62.74 kcal Atomic # 14 Polarization: 32.83 SS G_CDS: 2.03 Total: 34.86 kcal Atomic # 16 Polarization: 78.05 SS G_CDS: -0.30 Total: 77.74 kcal Atomic # 17 Polarization: -0.35 SS G_CDS: -0.08 Total: -0.43 kcal Total: -54.62 1.62 -53.00 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185696880.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.966 kcal (2) G-P(sol) polarization free energy of solvation -54.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds