Wall clock time and date at job start Tue Mar 31 2020 21:08:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31557 * 1 3 3 Si 1.86801 * 119.99823 * 2 1 4 4 H 1.48501 * 109.46962 * 270.00461 * 3 2 1 5 5 H 1.48497 * 109.47116 * 30.00162 * 3 2 1 6 6 H 1.48496 * 109.47168 * 150.00790 * 3 2 1 7 7 C 1.38653 * 120.00127 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99478 * 359.97438 * 7 2 1 9 9 O 1.34829 * 120.00174 * 179.97438 * 7 2 1 10 10 C 1.35751 * 117.00030 * 185.05575 * 9 7 2 11 11 C 1.38937 * 120.04066 * 354.48722 * 10 9 7 12 12 C 1.38105 * 120.03972 * 179.72369 * 11 10 9 13 13 C 1.38237 * 120.12614 * 0.50505 * 12 11 10 14 14 C 1.38794 * 120.07577 * 359.49318 * 13 12 11 15 15 O 1.35896 * 120.01646 * 180.23176 * 14 13 12 16 16 S 1.52202 * 114.00226 * 90.00229 * 15 14 13 17 17 O 1.42099 * 106.40256 * 188.54005 * 16 15 14 18 18 O 1.42096 * 106.39707 * 321.45594 * 16 15 14 19 19 C 1.76193 * 107.21851 * 74.99341 * 16 15 14 20 20 C 1.38261 * 119.99277 * 269.73135 * 19 16 15 21 21 C 1.38221 * 120.05677 * 179.73092 * 20 19 16 22 22 C 1.38219 * 120.02101 * 0.53891 * 21 20 19 23 23 C 1.38439 * 119.97595 * 359.73422 * 22 21 20 24 24 F 1.35103 * 120.02572 * 180.02562 * 23 22 21 25 25 C 1.38181 * 119.98399 * 90.00171 * 19 16 15 26 26 C 1.38606 * 119.95679 * 0.25363 * 14 13 12 27 27 H 0.97001 * 120.00332 * 359.97438 * 1 2 3 28 28 H 1.07996 * 119.98168 * 359.97438 * 11 10 9 29 29 H 1.08005 * 119.94163 * 180.27655 * 12 11 10 30 30 H 1.07992 * 119.96172 * 179.76868 * 13 12 11 31 31 H 1.08008 * 119.97037 * 359.97159 * 20 19 16 32 32 H 1.07999 * 119.99246 * 180.27483 * 21 20 19 33 33 H 1.08000 * 120.01047 * 179.75102 * 22 21 20 34 34 H 1.07995 * 120.01316 * 359.97438 * 25 19 16 35 35 H 1.08000 * 120.05825 * 179.97438 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 2.4969 2.0465 -1.4001 5 1 1.4470 2.6526 0.7001 6 1 3.5471 1.4402 0.6998 7 6 2.0089 -1.2008 -0.0005 8 1 1.4688 -2.1361 -0.0005 9 8 3.3572 -1.2008 -0.0011 10 6 3.9734 -2.4056 -0.1082 11 6 3.2225 -3.5745 -0.0955 12 6 3.8489 -4.7999 -0.2102 13 6 5.2247 -4.8676 -0.3273 14 6 5.9797 -3.7031 -0.3405 15 8 7.3317 -3.7708 -0.4604 16 16 7.8280 -3.7397 -1.8989 17 8 9.2203 -4.0193 -1.8492 18 8 6.9071 -4.5112 -2.6578 19 6 7.6738 -2.0794 -2.4681 20 6 6.5072 -1.6654 -3.0838 21 6 6.3827 -0.3617 -3.5259 22 6 7.4289 0.5267 -3.3627 23 6 8.5997 0.1118 -2.7515 24 9 9.6228 0.9795 -2.5910 25 6 8.7211 -1.1931 -2.3040 26 6 5.3540 -2.4712 -0.2309 27 1 -0.4851 0.8400 0.0004 28 1 2.1479 -3.5246 -0.0001 29 1 3.2633 -5.7074 -0.2047 30 1 5.7121 -5.8274 -0.4131 31 1 5.6909 -2.3603 -3.2160 32 1 5.4692 -0.0382 -4.0027 33 1 7.3329 1.5442 -3.7118 34 1 9.6338 -1.5177 -1.8266 35 1 5.9400 -1.5640 -0.2406 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001191248132.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:08:04 Heat of formation + Delta-G solvation = -114.052270 kcal Electronic energy + Delta-G solvation = -26943.367414 eV Core-core repulsion = 22722.271487 eV Total energy + Delta-G solvation = -4221.095926 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 338.050 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -49.11831 -40.86120 -39.15040 -38.97955 -37.35205 -36.28457 -36.02911 -32.64279 -31.72781 -30.84595 -30.27292 -29.23638 -25.58164 -23.93588 -23.20918 -22.98216 -22.14586 -20.39646 -19.13343 -18.39704 -17.82998 -17.68453 -16.78416 -16.66537 -16.33776 -16.19602 -15.83174 -15.55907 -15.33660 -14.71833 -14.35308 -14.16451 -14.12540 -13.53083 -13.40827 -13.37197 -13.00459 -12.71701 -12.54464 -12.53144 -12.28596 -12.22651 -12.13553 -11.91389 -11.54430 -11.47998 -11.11141 -10.99091 -10.87589 -10.39842 -9.75811 -9.68938 -9.12641 -9.05846 -8.64290 -7.78022 -6.64334 -4.32706 0.09204 0.46615 0.89398 1.54270 1.84493 2.37607 3.05362 3.09765 3.11766 3.23748 3.54636 3.88068 3.99095 4.03362 4.21157 4.42596 4.54029 4.60371 4.82650 4.84924 5.00155 5.13909 5.25245 5.36629 5.42612 5.61837 5.64312 5.72722 5.80323 5.83008 5.96624 6.03258 6.36804 6.48602 6.53113 6.70956 6.89167 7.18998 7.50109 7.75776 8.68846 9.24890 10.42099 Molecular weight = 338.05amu Principal moments of inertia in cm(-1) A = 0.010778 B = 0.005263 C = 0.003795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2597.347057 B = 5318.456705 C = 7376.710974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.069 3.931 3 Si 0.902 3.098 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.258 1.258 7 C -0.395 4.395 8 H 0.111 0.889 9 O -0.205 6.205 10 C 0.171 3.829 11 C -0.198 4.198 12 C -0.058 4.058 13 C -0.174 4.174 14 C 0.094 3.906 15 O -0.654 6.654 16 S 2.681 3.319 17 O -0.937 6.937 18 O -0.943 6.943 19 C -0.673 4.673 20 C -0.014 4.014 21 C -0.107 4.107 22 C -0.095 4.095 23 C 0.074 3.926 24 F -0.136 7.136 25 C -0.052 4.052 26 C -0.197 4.197 27 H 0.283 0.717 28 H 0.145 0.855 29 H 0.130 0.870 30 H 0.127 0.873 31 H 0.152 0.848 32 H 0.147 0.853 33 H 0.144 0.856 34 H 0.153 0.847 35 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.531 -2.506 -5.127 12.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.136 4.136 3 Si 0.727 3.273 4 H -0.197 1.197 5 H -0.205 1.205 6 H -0.182 1.182 7 C -0.470 4.470 8 H 0.128 0.872 9 O -0.109 6.109 10 C 0.117 3.883 11 C -0.219 4.219 12 C -0.077 4.077 13 C -0.195 4.195 14 C 0.053 3.947 15 O -0.614 6.614 16 S 2.773 3.227 17 O -0.935 6.935 18 O -0.942 6.942 19 C -0.756 4.756 20 C -0.033 4.033 21 C -0.125 4.125 22 C -0.114 4.114 23 C 0.054 3.946 24 F -0.115 7.115 25 C -0.072 4.072 26 C -0.218 4.218 27 H 0.093 0.907 28 H 0.163 0.837 29 H 0.148 0.852 30 H 0.145 0.855 31 H 0.170 0.830 32 H 0.165 0.835 33 H 0.162 0.838 34 H 0.170 0.830 35 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 11.751 -2.730 -4.951 13.040 hybrid contribution 0.416 1.742 -0.133 1.796 sum 12.167 -0.988 -5.084 13.223 Atomic orbital electron populations 1.69627 1.05580 1.28915 1.46310 1.24461 0.95010 0.98885 0.95254 0.86235 0.80489 0.81437 0.79162 1.19662 1.20500 1.18241 1.20791 0.76346 0.96903 1.52918 0.87165 1.83575 1.23040 1.25059 1.79214 1.18571 0.90330 0.86062 0.93343 1.21554 1.01991 0.91569 1.06739 1.20726 0.92890 0.97624 0.96436 1.20761 0.94304 0.96407 1.08033 1.17526 0.74551 0.94518 1.08065 1.85673 1.29837 1.91430 1.54435 1.02489 0.73969 0.73623 0.72667 1.93604 1.31434 1.83453 1.85014 1.93643 1.63409 1.66756 1.70401 1.31118 1.01815 1.26193 1.16505 1.21151 0.94943 0.96810 0.90424 1.21275 0.98873 0.92879 0.99507 1.21535 0.91913 1.01322 0.96599 1.17668 0.86197 0.87976 1.02746 1.91524 1.57481 1.68622 1.93829 1.20842 0.98512 0.91353 0.96481 1.20094 0.93249 0.96301 1.12184 0.90678 0.83712 0.85244 0.85496 0.82998 0.83495 0.83830 0.82971 0.85037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.03 13.96 55.48 0.77 -22.26 16 2 C 0.07 1.76 5.49 -17.52 -0.10 1.67 16 3 Si 0.90 19.77 28.62 -169.99 -4.86 14.90 16 4 H -0.27 -5.77 7.11 56.52 0.40 -5.36 16 5 H -0.28 -5.99 7.11 56.52 0.40 -5.58 16 6 H -0.26 -5.72 7.11 56.52 0.40 -5.32 16 7 C -0.39 -9.92 9.95 30.89 0.31 -9.61 16 8 H 0.11 2.79 5.43 -52.48 -0.29 2.51 16 9 O -0.20 -4.77 8.58 0.05 0.00 -4.76 16 10 C 0.17 3.43 6.64 -39.13 -0.26 3.17 16 11 C -0.20 -3.65 9.17 -39.37 -0.36 -4.01 16 12 C -0.06 -0.91 10.03 -39.63 -0.40 -1.31 16 13 C -0.17 -2.75 9.19 -39.38 -0.36 -3.12 16 14 C 0.09 1.59 4.80 -39.24 -0.19 1.40 16 15 O -0.65 -10.17 10.16 -51.54 -0.52 -10.69 16 16 S 2.68 39.83 5.42 -107.50 -0.58 39.25 16 17 O -0.94 -15.22 17.27 -66.81 -1.15 -16.37 16 18 O -0.94 -15.24 15.59 -66.81 -1.04 -16.28 16 19 C -0.67 -9.24 5.27 -39.59 -0.21 -9.45 16 20 C -0.01 -0.19 8.46 -39.58 -0.33 -0.52 16 21 C -0.11 -1.26 10.04 -39.59 -0.40 -1.66 16 22 C -0.09 -1.07 10.03 -39.51 -0.40 -1.47 16 23 C 0.07 0.93 7.30 -39.42 -0.29 0.64 16 24 F -0.14 -1.71 17.27 2.25 0.04 -1.67 16 25 C -0.05 -0.68 9.50 -39.51 -0.38 -1.05 16 26 C -0.20 -3.52 8.34 -39.25 -0.33 -3.85 16 27 H 0.28 6.95 8.31 -40.82 -0.34 6.61 16 28 H 0.15 2.73 5.63 -52.49 -0.30 2.43 16 29 H 0.13 1.59 8.06 -52.48 -0.42 1.17 16 30 H 0.13 1.73 8.06 -52.49 -0.42 1.31 16 31 H 0.15 1.97 7.61 -52.48 -0.40 1.57 16 32 H 0.15 1.44 8.06 -52.49 -0.42 1.02 16 33 H 0.14 1.26 8.06 -52.49 -0.42 0.83 16 34 H 0.15 1.75 7.62 -52.49 -0.40 1.35 16 35 H 0.13 2.21 7.95 -52.49 -0.42 1.79 16 LS Contribution 327.21 15.07 4.93 4.93 Total: -1.00 -29.07 327.21 -8.73 -37.80 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: -2.62 Total: 4.32 kcal Atomic # 6 Polarization: -25.48 SS G_CDS: -3.69 Total: -29.16 kcal Atomic # 7 Polarization: -23.03 SS G_CDS: 0.77 Total: -22.26 kcal Atomic # 8 Polarization: -45.39 SS G_CDS: -2.72 Total: -48.11 kcal Atomic # 9 Polarization: -1.71 SS G_CDS: 0.04 Total: -1.67 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -4.86 Total: 14.90 kcal Atomic # 16 Polarization: 39.83 SS G_CDS: -0.58 Total: 39.25 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -29.07 -8.73 -37.80 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191248132.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.250 kcal (2) G-P(sol) polarization free energy of solvation -29.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds