Wall clock time and date at job start Tue Mar 31 2020 21:08:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31557 * 1 3 3 Si 1.86801 * 119.99823 * 2 1 4 4 H 1.48501 * 109.46962 * 270.00461 * 3 2 1 5 5 H 1.48497 * 109.47116 * 30.00162 * 3 2 1 6 6 H 1.48496 * 109.47168 * 150.00790 * 3 2 1 7 7 C 1.38653 * 120.00127 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99478 * 359.97438 * 7 2 1 9 9 O 1.34829 * 120.00174 * 179.97438 * 7 2 1 10 10 C 1.35751 * 117.00030 * 185.05575 * 9 7 2 11 11 C 1.38937 * 120.04066 * 354.48722 * 10 9 7 12 12 C 1.38105 * 120.03972 * 179.72369 * 11 10 9 13 13 C 1.38237 * 120.12614 * 0.50505 * 12 11 10 14 14 C 1.38794 * 120.07577 * 359.49318 * 13 12 11 15 15 O 1.35896 * 120.01646 * 180.23176 * 14 13 12 16 16 S 1.52202 * 114.00226 * 90.00229 * 15 14 13 17 17 O 1.42099 * 106.40256 * 188.54005 * 16 15 14 18 18 O 1.42096 * 106.39707 * 321.45594 * 16 15 14 19 19 C 1.76193 * 107.21851 * 74.99341 * 16 15 14 20 20 C 1.38261 * 119.99277 * 269.73135 * 19 16 15 21 21 C 1.38221 * 120.05677 * 179.73092 * 20 19 16 22 22 C 1.38219 * 120.02101 * 0.53891 * 21 20 19 23 23 C 1.38439 * 119.97595 * 359.73422 * 22 21 20 24 24 F 1.35103 * 120.02572 * 180.02562 * 23 22 21 25 25 C 1.38181 * 119.98399 * 90.00171 * 19 16 15 26 26 C 1.38606 * 119.95679 * 0.25363 * 14 13 12 27 27 H 0.97001 * 120.00332 * 359.97438 * 1 2 3 28 28 H 1.07996 * 119.98168 * 359.97438 * 11 10 9 29 29 H 1.08005 * 119.94163 * 180.27655 * 12 11 10 30 30 H 1.07992 * 119.96172 * 179.76868 * 13 12 11 31 31 H 1.08008 * 119.97037 * 359.97159 * 20 19 16 32 32 H 1.07999 * 119.99246 * 180.27483 * 21 20 19 33 33 H 1.08000 * 120.01047 * 179.75102 * 22 21 20 34 34 H 1.07995 * 120.01316 * 359.97438 * 25 19 16 35 35 H 1.08000 * 120.05825 * 179.97438 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 2.4969 2.0465 -1.4001 5 1 1.4470 2.6526 0.7001 6 1 3.5471 1.4402 0.6998 7 6 2.0089 -1.2008 -0.0005 8 1 1.4688 -2.1361 -0.0005 9 8 3.3572 -1.2008 -0.0011 10 6 3.9734 -2.4056 -0.1082 11 6 3.2225 -3.5745 -0.0955 12 6 3.8489 -4.7999 -0.2102 13 6 5.2247 -4.8676 -0.3273 14 6 5.9797 -3.7031 -0.3405 15 8 7.3317 -3.7708 -0.4604 16 16 7.8280 -3.7397 -1.8989 17 8 9.2203 -4.0193 -1.8492 18 8 6.9071 -4.5112 -2.6578 19 6 7.6738 -2.0794 -2.4681 20 6 6.5072 -1.6654 -3.0838 21 6 6.3827 -0.3617 -3.5259 22 6 7.4289 0.5267 -3.3627 23 6 8.5997 0.1118 -2.7515 24 9 9.6228 0.9795 -2.5910 25 6 8.7211 -1.1931 -2.3040 26 6 5.3540 -2.4712 -0.2309 27 1 -0.4851 0.8400 0.0004 28 1 2.1479 -3.5246 -0.0001 29 1 3.2633 -5.7074 -0.2047 30 1 5.7121 -5.8274 -0.4131 31 1 5.6909 -2.3603 -3.2160 32 1 5.4692 -0.0382 -4.0027 33 1 7.3329 1.5442 -3.7118 34 1 9.6338 -1.5177 -1.8266 35 1 5.9400 -1.5640 -0.2406 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001191248132.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:08:03 Heat of formation + Delta-G solvation = -130.995937 kcal Electronic energy + Delta-G solvation = -26944.102146 eV Core-core repulsion = 22722.271487 eV Total energy + Delta-G solvation = -4221.830659 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 338.050 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -50.08660 -42.19691 -40.53371 -40.10717 -38.60639 -37.76469 -37.28581 -34.47306 -32.71106 -31.94898 -31.56204 -30.68852 -27.34630 -24.98489 -24.54478 -23.98461 -23.54953 -21.77396 -20.35340 -19.85644 -19.32215 -18.95754 -18.02530 -17.77474 -17.43223 -17.36028 -17.02033 -16.79193 -16.68129 -16.01599 -15.92682 -15.76224 -15.09299 -14.95560 -14.70261 -14.50403 -14.35406 -14.20699 -13.80717 -13.76062 -13.56482 -13.46652 -13.38836 -13.08149 -13.00314 -12.93778 -12.55551 -12.53239 -12.03169 -11.93070 -11.43915 -10.92924 -10.70441 -10.09929 -9.97493 -9.31788 -8.50060 -6.23632 -1.10372 -0.55517 -0.08474 0.16523 0.42906 1.14229 1.34869 1.35965 1.52695 2.10456 2.27210 2.39074 2.53843 2.83980 2.89854 2.99668 3.14771 3.50680 3.73252 3.81460 3.84918 3.96279 4.08502 4.13690 4.19369 4.32518 4.46378 4.55670 4.66335 4.75073 4.90360 5.01425 5.02904 5.11335 5.25392 5.47743 5.58395 5.66352 5.74514 6.02478 6.83550 7.50058 8.60115 Molecular weight = 338.05amu Principal moments of inertia in cm(-1) A = 0.010778 B = 0.005263 C = 0.003795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2597.347057 B = 5318.456705 C = 7376.710974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.020 3.980 3 Si 0.957 3.043 4 H -0.259 1.259 5 H -0.274 1.274 6 H -0.264 1.264 7 C -0.398 4.398 8 H 0.094 0.906 9 O -0.230 6.230 10 C 0.147 3.853 11 C -0.205 4.205 12 C -0.048 4.048 13 C -0.162 4.162 14 C 0.089 3.911 15 O -0.653 6.653 16 S 2.695 3.305 17 O -0.951 6.951 18 O -0.957 6.957 19 C -0.680 4.680 20 C -0.028 4.028 21 C -0.110 4.110 22 C -0.086 4.086 23 C 0.066 3.934 24 F -0.137 7.137 25 C -0.060 4.060 26 C -0.191 4.191 27 H 0.285 0.715 28 H 0.135 0.865 29 H 0.170 0.830 30 H 0.157 0.843 31 H 0.151 0.849 32 H 0.168 0.832 33 H 0.173 0.827 34 H 0.162 0.838 35 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.062 -2.783 -5.718 14.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.180 4.180 3 Si 0.780 3.220 4 H -0.184 1.184 5 H -0.199 1.199 6 H -0.188 1.188 7 C -0.474 4.474 8 H 0.112 0.888 9 O -0.137 6.137 10 C 0.096 3.904 11 C -0.225 4.225 12 C -0.066 4.066 13 C -0.182 4.182 14 C 0.048 3.952 15 O -0.613 6.613 16 S 2.789 3.211 17 O -0.949 6.949 18 O -0.955 6.955 19 C -0.765 4.765 20 C -0.047 4.047 21 C -0.129 4.129 22 C -0.105 4.105 23 C 0.046 3.954 24 F -0.115 7.115 25 C -0.080 4.080 26 C -0.213 4.213 27 H 0.095 0.905 28 H 0.152 0.848 29 H 0.187 0.813 30 H 0.175 0.825 31 H 0.168 0.832 32 H 0.185 0.815 33 H 0.190 0.810 34 H 0.179 0.821 35 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 13.319 -3.066 -5.538 14.747 hybrid contribution 0.163 1.579 0.004 1.588 sum 13.482 -1.486 -5.534 14.649 Atomic orbital electron populations 1.69704 1.06811 1.29672 1.49174 1.25143 0.95678 1.01791 0.95406 0.85407 0.78917 0.78073 0.79641 1.18361 1.19889 1.18814 1.20741 0.77422 0.96493 1.52777 0.88827 1.83532 1.21765 1.26500 1.81893 1.18949 0.91257 0.85893 0.94284 1.21669 1.01666 0.92397 1.06778 1.21123 0.93114 0.97895 0.94467 1.21283 0.94478 0.97405 1.05084 1.17635 0.75184 0.94505 1.07857 1.85651 1.29122 1.91554 1.54959 1.01875 0.73286 0.73823 0.72113 1.93585 1.32163 1.84080 1.85114 1.93620 1.63698 1.67724 1.70507 1.30836 1.02540 1.25446 1.17710 1.21298 0.94809 0.97723 0.90875 1.21564 0.99857 0.92281 0.99154 1.21878 0.90928 1.02559 0.95133 1.17798 0.86667 0.87846 1.03064 1.91525 1.57594 1.68537 1.93872 1.21010 0.98715 0.91677 0.96612 1.20171 0.92440 0.97326 1.11325 0.90495 0.84779 0.81279 0.82498 0.83180 0.81467 0.80959 0.82052 0.84295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.96 13.96 21.61 0.30 -49.66 16 2 C 0.02 1.03 5.49 84.83 0.47 1.50 16 3 Si 0.96 40.92 28.62 68.60 1.96 42.88 16 4 H -0.26 -10.40 7.11 99.48 0.71 -9.70 16 5 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 6 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 7 C -0.40 -20.61 9.95 67.92 0.68 -19.93 16 8 H 0.09 4.97 5.43 -2.91 -0.02 4.95 16 9 O -0.23 -10.86 8.58 -22.74 -0.20 -11.05 16 10 C 0.15 5.87 6.64 22.56 0.15 6.02 16 11 C -0.21 -7.41 9.17 22.41 0.21 -7.20 16 12 C -0.05 -1.36 10.03 22.24 0.22 -1.14 16 13 C -0.16 -4.61 9.19 22.40 0.21 -4.40 16 14 C 0.09 2.81 4.80 22.49 0.11 2.92 16 15 O -0.65 -19.02 10.16 -61.66 -0.63 -19.65 16 16 S 2.70 75.81 5.42 -56.49 -0.31 75.51 16 17 O -0.95 -29.56 17.27 -118.78 -2.05 -31.61 16 18 O -0.96 -29.19 15.59 -118.78 -1.85 -31.04 16 19 C -0.68 -17.69 5.27 22.26 0.12 -17.58 16 20 C -0.03 -0.70 8.46 22.27 0.19 -0.51 16 21 C -0.11 -2.36 10.04 22.26 0.22 -2.14 16 22 C -0.09 -1.73 10.03 22.31 0.22 -1.50 16 23 C 0.07 1.53 7.30 22.38 0.16 1.69 16 24 F -0.14 -3.17 17.27 44.97 0.78 -2.39 16 25 C -0.06 -1.47 9.50 22.31 0.21 -1.26 16 26 C -0.19 -6.63 8.34 22.48 0.19 -6.44 16 27 H 0.29 14.41 8.31 -92.71 -0.77 13.64 16 28 H 0.13 5.16 5.63 -2.91 -0.02 5.14 16 29 H 0.17 3.44 8.06 -2.91 -0.02 3.42 16 30 H 0.16 3.58 8.06 -2.91 -0.02 3.56 16 31 H 0.15 3.75 7.61 -2.91 -0.02 3.73 16 32 H 0.17 2.85 8.06 -2.91 -0.02 2.83 16 33 H 0.17 2.40 8.06 -2.91 -0.02 2.37 16 34 H 0.16 3.50 7.62 -2.91 -0.02 3.48 16 35 H 0.14 4.53 7.95 -2.91 -0.02 4.51 16 Total: -1.00 -62.77 327.21 2.52 -60.25 By element: Atomic # 1 Polarization: 15.58 SS G_CDS: 1.16 Total: 16.74 kcal Atomic # 6 Polarization: -53.32 SS G_CDS: 3.35 Total: -49.97 kcal Atomic # 7 Polarization: -49.96 SS G_CDS: 0.30 Total: -49.66 kcal Atomic # 8 Polarization: -88.63 SS G_CDS: -4.73 Total: -93.35 kcal Atomic # 9 Polarization: -3.17 SS G_CDS: 0.78 Total: -2.39 kcal Atomic # 14 Polarization: 40.92 SS G_CDS: 1.96 Total: 42.88 kcal Atomic # 16 Polarization: 75.81 SS G_CDS: -0.31 Total: 75.51 kcal Total: -62.77 2.52 -60.25 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191248132.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.746 kcal (2) G-P(sol) polarization free energy of solvation -62.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds