Wall clock time and date at job start Tue Mar 31 2020 20:07:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43206 * 179.97438 * 2 1 4 4 C 1.43200 * 120.00098 * 174.59609 * 3 2 1 5 5 N 3.51040 * 140.69063 * 174.59319 * 2 1 3 6 6 C 1.41150 * 119.99815 * 354.59504 * 3 2 1 7 7 C 1.38983 * 120.00484 * 354.59747 * 6 3 2 8 8 H 1.08003 * 119.99349 * 72.57851 * 7 6 3 9 9 C 1.40815 * 120.00532 * 252.58779 * 7 6 3 10 10 N 1.30342 * 120.00377 * 176.51792 * 9 7 6 11 11 Si 1.86797 * 119.99906 * 356.51098 * 9 7 6 12 12 H 1.48502 * 109.46958 * 94.82905 * 11 9 7 13 13 H 1.48501 * 109.47479 * 214.82890 * 11 9 7 14 14 H 1.48497 * 109.47453 * 334.83361 * 11 9 7 15 15 N 1.38239 * 119.99903 * 174.60352 * 6 3 2 16 16 S 1.65596 * 119.99856 * 188.73691 * 15 6 3 17 17 O 1.42104 * 106.40368 * 312.68903 * 16 15 6 18 18 O 1.42105 * 106.40043 * 179.77428 * 16 15 6 19 19 C 1.76193 * 107.22280 * 66.23276 * 16 15 6 20 20 C 1.38173 * 120.42607 * 78.55665 * 19 16 15 21 21 N 1.31882 * 120.77539 * 180.30577 * 20 19 16 22 22 C 1.31909 * 121.76062 * 359.42957 * 21 20 19 23 23 C 1.38122 * 120.77487 * 0.56789 * 22 21 20 24 24 C 1.38779 * 120.42836 * 258.58731 * 19 16 15 25 25 Cl 1.73594 * 120.80493 * 359.94889 * 24 19 16 26 26 H 0.96997 * 119.99993 * 179.97438 * 10 9 7 27 27 H 0.96995 * 119.99990 * 8.73786 * 15 6 3 28 28 H 1.07999 * 119.61087 * 0.02581 * 20 19 16 29 29 H 1.07993 * 119.61332 * 180.32077 * 22 21 20 30 30 H 1.08003 * 120.42440 * 179.74613 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2835 1.2356 -0.1168 5 7 3.8521 2.2140 -0.2095 6 6 3.2743 -1.2160 0.1151 7 6 2.5846 -2.4013 0.3411 8 1 2.0019 -2.8465 -0.4518 9 6 2.6454 -3.0217 1.6038 10 7 1.9449 -4.0960 1.8365 11 14 3.7300 -2.3051 2.9452 12 1 2.9200 -1.4125 3.8126 13 1 4.2992 -3.4065 3.7627 14 1 4.8331 -1.5266 2.3268 15 7 4.6521 -1.2287 0.0033 16 16 5.4629 -2.6702 -0.0789 17 8 4.9379 -3.4857 0.9597 18 8 6.8425 -2.3487 -0.1924 19 6 5.0051 -3.4405 -1.5959 20 6 5.5728 -3.0319 -2.7875 21 7 5.2307 -3.5996 -3.9277 22 6 4.3492 -4.5795 -3.9784 23 6 3.7393 -5.0417 -2.8286 24 6 4.0691 -4.4651 -1.6095 25 17 3.3291 -5.0128 -0.1378 26 1 1.9871 -4.5235 2.7062 27 1 5.1439 -0.3932 -0.0270 28 1 6.3020 -2.2352 -2.7856 29 1 4.0985 -5.0230 -4.9306 30 1 3.0152 -5.8416 -2.8771 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192912716.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:07:04 Heat of formation + Delta-G solvation = 61.537583 kcal Electronic energy + Delta-G solvation = -25041.540334 eV Core-core repulsion = 21185.147338 eV Total energy + Delta-G solvation = -3856.392996 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 338.003 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.08250 -38.06673 -37.03480 -36.09167 -35.72957 -35.41130 -35.15314 -33.30248 -32.14527 -31.58610 -30.35194 -27.28261 -24.14596 -23.64910 -21.98760 -20.15060 -19.01532 -18.12930 -17.79304 -17.47244 -16.99428 -16.73733 -16.13528 -15.35971 -14.83709 -14.43670 -14.22856 -13.75194 -13.65908 -13.19462 -13.08176 -12.97770 -12.76916 -12.40588 -12.36390 -12.18060 -12.09896 -11.97197 -11.89383 -11.49701 -11.46315 -11.38262 -11.16368 -10.70234 -10.57653 -10.22076 -9.83596 -9.72910 -9.48580 -9.28684 -8.68374 -7.58567 -7.05988 -5.37603 0.31515 0.65132 1.07557 1.82681 2.44349 2.74958 3.01206 3.13129 3.28124 3.30879 3.49075 3.63152 3.81327 3.86691 3.96587 4.25739 4.40552 4.46957 4.66475 4.68580 4.89126 5.10239 5.16732 5.42099 5.45973 5.53221 5.72346 5.76540 6.36909 6.44134 6.88945 7.23920 7.60312 7.68505 7.89892 8.27718 8.31018 8.72177 9.87671 Molecular weight = 338.00amu Principal moments of inertia in cm(-1) A = 0.011340 B = 0.007580 C = 0.006719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2468.552191 B = 3693.265630 C = 4166.111541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.482 5.482 2 C 0.324 3.676 3 C -0.214 4.214 4 C 0.289 3.711 5 N -0.487 5.487 6 C 0.447 3.553 7 C -0.560 4.560 8 H 0.132 0.868 9 C 0.157 3.843 10 N -0.789 5.789 11 Si 0.948 3.052 12 H -0.289 1.289 13 H -0.270 1.270 14 H -0.282 1.282 15 N -1.048 6.048 16 S 2.694 3.306 17 O -0.912 6.912 18 O -0.960 6.960 19 C -0.720 4.720 20 C 0.208 3.792 21 N -0.505 5.505 22 C 0.156 3.844 23 C -0.198 4.198 24 C 0.090 3.910 25 Cl 0.079 6.921 26 H 0.293 0.707 27 H 0.412 0.588 28 H 0.169 0.831 29 H 0.166 0.834 30 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.842 -6.640 -4.964 10.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.161 5.161 2 C 0.012 3.988 3 C -0.233 4.233 4 C -0.021 4.021 5 N -0.167 5.167 6 C 0.338 3.662 7 C -0.595 4.595 8 H 0.150 0.850 9 C -0.066 4.066 10 N -0.415 5.415 11 Si 0.777 3.223 12 H -0.217 1.217 13 H -0.195 1.195 14 H -0.208 1.208 15 N -0.788 5.788 16 S 2.786 3.214 17 O -0.902 6.902 18 O -0.950 6.950 19 C -0.809 4.809 20 C 0.048 3.952 21 N -0.215 5.215 22 C 0.001 3.999 23 C -0.220 4.220 24 C 0.053 3.947 25 Cl 0.109 6.891 26 H 0.105 0.895 27 H 0.248 0.752 28 H 0.187 0.813 29 H 0.183 0.817 30 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 5.817 -5.652 -5.030 9.544 hybrid contribution 0.114 -0.164 0.678 0.707 sum 5.931 -5.816 -4.352 9.378 Atomic orbital electron populations 1.81086 1.11847 1.08392 1.14802 1.24232 0.90882 0.92370 0.91364 1.13547 0.84272 0.85420 1.40093 1.25374 0.93201 0.92331 0.91243 1.81139 1.09358 1.10074 1.16084 1.17517 0.78891 0.93018 0.76814 1.19084 1.32731 1.05973 1.01694 0.85044 1.25537 0.90982 0.92142 0.97915 1.69091 1.32342 1.15163 1.24896 0.85693 0.78862 0.78170 0.79618 1.21702 1.19458 1.20811 1.55224 1.16806 1.26005 1.80729 1.02138 0.72087 0.72933 0.74261 1.93383 1.77988 1.67169 1.51625 1.93590 1.30265 1.83890 1.87298 1.31391 1.13245 1.14013 1.22274 1.22492 0.92459 0.94330 0.85911 1.67794 1.15121 1.10003 1.28617 1.23065 0.88704 0.89832 0.98266 1.22242 1.03868 1.03703 0.92156 1.21804 0.88551 0.90251 0.94102 1.98715 1.76883 1.87785 1.25683 0.89525 0.75242 0.81349 0.81728 0.83247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -10.73 18.54 41.84 0.78 -9.95 16 2 C 0.32 6.77 14.39 -22.47 -0.32 6.45 16 3 C -0.21 -4.09 5.88 -104.94 -0.62 -4.71 16 4 C 0.29 5.44 14.10 -22.49 -0.32 5.12 16 5 N -0.49 -9.51 18.53 41.81 0.77 -8.74 16 6 C 0.45 8.29 4.61 -83.59 -0.39 7.91 16 7 C -0.56 -11.23 4.69 -38.33 -0.18 -11.41 16 8 H 0.13 2.77 7.35 -52.48 -0.39 2.38 16 9 C 0.16 3.30 3.15 -17.21 -0.05 3.24 16 10 N -0.79 -16.87 11.40 55.59 0.63 -16.23 16 11 Si 0.95 19.13 24.22 -169.99 -4.12 15.02 16 12 H -0.29 -5.95 7.11 56.52 0.40 -5.55 16 13 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 14 H -0.28 -5.27 5.51 56.52 0.31 -4.96 16 15 N -1.05 -17.43 4.42 32.59 0.14 -17.29 16 16 S 2.69 45.24 4.83 -107.50 -0.52 44.72 16 17 O -0.91 -16.98 7.73 -57.17 -0.44 -17.43 16 18 O -0.96 -16.80 17.64 -57.17 -1.01 -17.80 16 19 C -0.72 -11.11 5.67 -39.41 -0.22 -11.33 16 20 C 0.21 2.94 10.70 -17.55 -0.19 2.75 16 21 N -0.51 -6.95 10.36 -13.27 -0.14 -7.09 16 22 C 0.16 1.82 11.18 -17.56 -0.20 1.63 16 23 C -0.20 -2.49 9.94 -39.41 -0.39 -2.88 16 24 C 0.09 1.39 5.92 -39.16 -0.23 1.15 16 25 Cl 0.08 1.38 18.78 -51.86 -0.97 0.41 16 26 H 0.29 5.94 8.28 -40.82 -0.34 5.61 16 27 H 0.41 6.11 7.68 -34.47 -0.26 5.84 16 28 H 0.17 2.00 7.91 -52.49 -0.42 1.59 16 29 H 0.17 1.28 8.06 -52.49 -0.42 0.86 16 30 H 0.15 1.50 8.06 -52.48 -0.42 1.08 16 LS Contribution 293.75 15.07 4.43 4.43 Total: -1.00 -25.55 293.75 -4.69 -30.23 By element: Atomic # 1 Polarization: 2.94 SS G_CDS: -1.14 Total: 1.80 kcal Atomic # 6 Polarization: 1.04 SS G_CDS: -3.11 Total: -2.07 kcal Atomic # 7 Polarization: -61.49 SS G_CDS: 2.19 Total: -59.30 kcal Atomic # 8 Polarization: -33.78 SS G_CDS: -1.45 Total: -35.23 kcal Atomic # 14 Polarization: 19.13 SS G_CDS: -4.12 Total: 15.02 kcal Atomic # 16 Polarization: 45.24 SS G_CDS: -0.52 Total: 44.72 kcal Atomic # 17 Polarization: 1.38 SS G_CDS: -0.97 Total: 0.41 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -25.55 -4.69 -30.23 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192912716.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.770 kcal (2) G-P(sol) polarization free energy of solvation -25.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.233 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds