Wall clock time and date at job start Tue Mar 31 2020 20:07:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43206 * 179.97438 * 2 1 4 4 C 1.43200 * 120.00098 * 174.59609 * 3 2 1 5 5 N 3.51040 * 140.69063 * 174.59319 * 2 1 3 6 6 C 1.41150 * 119.99815 * 354.59504 * 3 2 1 7 7 C 1.38983 * 120.00484 * 354.59747 * 6 3 2 8 8 H 1.08003 * 119.99349 * 72.57851 * 7 6 3 9 9 C 1.40815 * 120.00532 * 252.58779 * 7 6 3 10 10 N 1.30342 * 120.00377 * 176.51792 * 9 7 6 11 11 Si 1.86797 * 119.99906 * 356.51098 * 9 7 6 12 12 H 1.48502 * 109.46958 * 94.82905 * 11 9 7 13 13 H 1.48501 * 109.47479 * 214.82890 * 11 9 7 14 14 H 1.48497 * 109.47453 * 334.83361 * 11 9 7 15 15 N 1.38239 * 119.99903 * 174.60352 * 6 3 2 16 16 S 1.65596 * 119.99856 * 188.73691 * 15 6 3 17 17 O 1.42104 * 106.40368 * 312.68903 * 16 15 6 18 18 O 1.42105 * 106.40043 * 179.77428 * 16 15 6 19 19 C 1.76193 * 107.22280 * 66.23276 * 16 15 6 20 20 C 1.38173 * 120.42607 * 78.55665 * 19 16 15 21 21 N 1.31882 * 120.77539 * 180.30577 * 20 19 16 22 22 C 1.31909 * 121.76062 * 359.42957 * 21 20 19 23 23 C 1.38122 * 120.77487 * 0.56789 * 22 21 20 24 24 C 1.38779 * 120.42836 * 258.58731 * 19 16 15 25 25 Cl 1.73594 * 120.80493 * 359.94889 * 24 19 16 26 26 H 0.96997 * 119.99993 * 179.97438 * 10 9 7 27 27 H 0.96995 * 119.99990 * 8.73786 * 15 6 3 28 28 H 1.07999 * 119.61087 * 0.02581 * 20 19 16 29 29 H 1.07993 * 119.61332 * 180.32077 * 22 21 20 30 30 H 1.08003 * 120.42440 * 179.74613 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2835 1.2356 -0.1168 5 7 3.8521 2.2140 -0.2095 6 6 3.2743 -1.2160 0.1151 7 6 2.5846 -2.4013 0.3411 8 1 2.0019 -2.8465 -0.4518 9 6 2.6454 -3.0217 1.6038 10 7 1.9449 -4.0960 1.8365 11 14 3.7300 -2.3051 2.9452 12 1 2.9200 -1.4125 3.8126 13 1 4.2992 -3.4065 3.7627 14 1 4.8331 -1.5266 2.3268 15 7 4.6521 -1.2287 0.0033 16 16 5.4629 -2.6702 -0.0789 17 8 4.9379 -3.4857 0.9597 18 8 6.8425 -2.3487 -0.1924 19 6 5.0051 -3.4405 -1.5959 20 6 5.5728 -3.0319 -2.7875 21 7 5.2307 -3.5996 -3.9277 22 6 4.3492 -4.5795 -3.9784 23 6 3.7393 -5.0417 -2.8286 24 6 4.0691 -4.4651 -1.6095 25 17 3.3291 -5.0128 -0.1378 26 1 1.9871 -4.5235 2.7062 27 1 5.1439 -0.3932 -0.0270 28 1 6.3020 -2.2352 -2.7856 29 1 4.0985 -5.0230 -4.9306 30 1 3.0152 -5.8416 -2.8771 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192912716.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:07:03 Heat of formation + Delta-G solvation = 44.275515 kcal Electronic energy + Delta-G solvation = -25042.288874 eV Core-core repulsion = 21185.147338 eV Total energy + Delta-G solvation = -3857.141536 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 338.003 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.13603 -39.56809 -38.44345 -37.33180 -37.15035 -36.91385 -36.81306 -34.86909 -33.25339 -32.62313 -31.88114 -28.85915 -25.21754 -24.72446 -23.51979 -21.63781 -20.43394 -19.49523 -19.15657 -18.95940 -18.20082 -17.83372 -17.50144 -16.88424 -16.17675 -15.49546 -15.41685 -15.21997 -14.84015 -14.69804 -14.66116 -14.45724 -14.01136 -13.85267 -13.81912 -13.64114 -13.62292 -13.57668 -13.39259 -13.06429 -12.80815 -12.70095 -12.61048 -12.25113 -12.10923 -11.73088 -11.10842 -10.90720 -10.72882 -10.48616 -10.00980 -9.13625 -8.65767 -6.96412 -0.95984 -0.48482 -0.00286 0.28992 1.15904 1.35544 1.40559 1.50953 1.72560 1.83962 2.04089 2.22981 2.27915 2.37924 2.61434 2.89793 3.06444 3.16634 3.32149 3.36867 3.71305 3.88230 4.06671 4.12424 4.17495 4.39333 4.55168 4.78118 4.94141 5.32546 5.39509 5.82782 6.03891 6.30360 6.66149 6.69212 6.76813 7.07470 8.29854 Molecular weight = 338.00amu Principal moments of inertia in cm(-1) A = 0.011340 B = 0.007580 C = 0.006719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2468.552191 B = 3693.265630 C = 4166.111541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C 0.332 3.668 3 C -0.216 4.216 4 C 0.301 3.699 5 N -0.494 5.494 6 C 0.461 3.539 7 C -0.562 4.562 8 H 0.122 0.878 9 C 0.147 3.853 10 N -0.806 5.806 11 Si 0.948 3.052 12 H -0.297 1.297 13 H -0.273 1.273 14 H -0.264 1.264 15 N -1.042 6.042 16 S 2.700 3.300 17 O -0.929 6.929 18 O -0.967 6.967 19 C -0.727 4.727 20 C 0.203 3.797 21 N -0.515 5.515 22 C 0.167 3.833 23 C -0.195 4.195 24 C 0.073 3.927 25 Cl 0.052 6.948 26 H 0.294 0.706 27 H 0.423 0.577 28 H 0.187 0.813 29 H 0.210 0.790 30 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.666 -6.826 -6.681 11.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.190 5.190 2 C 0.020 3.980 3 C -0.235 4.235 4 C -0.010 4.010 5 N -0.174 5.174 6 C 0.351 3.649 7 C -0.597 4.597 8 H 0.139 0.861 9 C -0.074 4.074 10 N -0.432 5.432 11 Si 0.777 3.223 12 H -0.227 1.227 13 H -0.199 1.199 14 H -0.188 1.188 15 N -0.782 5.782 16 S 2.795 3.205 17 O -0.919 6.919 18 O -0.957 6.957 19 C -0.819 4.819 20 C 0.044 3.956 21 N -0.225 5.225 22 C 0.012 3.988 23 C -0.216 4.216 24 C 0.036 3.964 25 Cl 0.083 6.917 26 H 0.105 0.895 27 H 0.260 0.740 28 H 0.204 0.796 29 H 0.227 0.773 30 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 6.663 -5.810 -6.729 11.110 hybrid contribution -0.085 -0.179 1.061 1.079 sum 6.578 -5.989 -5.668 10.548 Atomic orbital electron populations 1.81085 1.12686 1.09213 1.16008 1.24466 0.91204 0.91627 0.90697 1.13448 0.83516 0.85727 1.40790 1.25160 0.92902 0.92000 0.90893 1.81159 1.09671 1.10134 1.16459 1.17308 0.79411 0.92323 0.75887 1.18936 1.33158 1.06281 1.01308 0.86090 1.25705 0.91128 0.92172 0.98444 1.69127 1.33174 1.15785 1.25144 0.85668 0.79217 0.78116 0.79334 1.22661 1.19860 1.18837 1.54955 1.16133 1.26864 1.80235 1.01717 0.71720 0.72548 0.74559 1.93352 1.78238 1.67233 1.53062 1.93581 1.30575 1.83957 1.87635 1.31096 1.14447 1.14695 1.21709 1.22840 0.92516 0.94696 0.85559 1.67902 1.15758 1.10678 1.28157 1.23804 0.86861 0.88429 0.99664 1.22590 1.03948 1.03860 0.91213 1.21906 0.89196 0.91112 0.94143 1.98704 1.77476 1.88098 1.27470 0.89455 0.74000 0.79622 0.77347 0.80768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -22.52 18.54 19.01 0.35 -22.16 16 2 C 0.33 13.63 14.39 88.33 1.27 14.90 16 3 C -0.22 -7.97 5.88 -20.07 -0.12 -8.09 16 4 C 0.30 10.84 14.10 88.34 1.25 12.09 16 5 N -0.49 -18.45 18.53 19.00 0.35 -18.09 16 6 C 0.46 16.62 4.61 39.03 0.18 16.80 16 7 C -0.56 -22.26 4.69 23.08 0.11 -22.16 16 8 H 0.12 5.08 7.35 -2.91 -0.02 5.06 16 9 C 0.15 6.16 3.15 85.54 0.27 6.42 16 10 N -0.81 -34.66 11.40 21.97 0.25 -34.41 16 11 Si 0.95 37.84 24.22 68.60 1.66 39.50 16 12 H -0.30 -12.21 7.11 99.48 0.71 -11.50 16 13 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 14 H -0.26 -9.50 5.51 99.48 0.55 -8.96 16 15 N -1.04 -33.12 4.42 -50.80 -0.22 -33.34 16 16 S 2.70 87.32 4.83 -56.49 -0.27 87.05 16 17 O -0.93 -34.03 7.73 -128.00 -0.99 -35.02 16 18 O -0.97 -32.32 17.64 -128.00 -2.26 -34.58 16 19 C -0.73 -21.24 5.67 22.38 0.13 -21.11 16 20 C 0.20 5.27 10.70 84.67 0.91 6.17 16 21 N -0.51 -12.51 10.36 -195.90 -2.03 -14.54 16 22 C 0.17 3.26 11.18 84.65 0.95 4.21 16 23 C -0.20 -4.34 9.94 22.38 0.22 -4.12 16 24 C 0.07 2.14 5.92 22.54 0.13 2.28 16 25 Cl 0.05 1.81 18.78 -2.72 -0.05 1.75 16 26 H 0.29 12.09 8.28 -92.71 -0.77 11.32 16 27 H 0.42 11.75 7.68 -96.75 -0.74 11.01 16 28 H 0.19 3.97 7.91 -2.91 -0.02 3.95 16 29 H 0.21 2.14 8.06 -2.91 -0.02 2.11 16 30 H 0.17 2.94 8.06 -2.91 -0.02 2.92 16 Total: -1.00 -53.31 293.75 2.44 -50.87 By element: Atomic # 1 Polarization: 5.23 SS G_CDS: 0.36 Total: 5.59 kcal Atomic # 6 Polarization: 2.10 SS G_CDS: 5.29 Total: 7.39 kcal Atomic # 7 Polarization: -121.25 SS G_CDS: -1.30 Total: -122.55 kcal Atomic # 8 Polarization: -66.36 SS G_CDS: -3.25 Total: -69.60 kcal Atomic # 14 Polarization: 37.84 SS G_CDS: 1.66 Total: 39.50 kcal Atomic # 16 Polarization: 87.32 SS G_CDS: -0.27 Total: 87.05 kcal Atomic # 17 Polarization: 1.81 SS G_CDS: -0.05 Total: 1.75 kcal Total: -53.31 2.44 -50.87 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192912716.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.144 kcal (2) G-P(sol) polarization free energy of solvation -53.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.868 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds