Wall clock time and date at job start Tue Mar 31 2020 20:06:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35077 * 116.99523 * 2 1 4 4 O 1.21807 * 120.00232 * 359.97438 * 3 2 1 5 5 C 1.40715 * 119.99750 * 180.02562 * 3 2 1 6 6 S 1.76171 * 126.13875 * 359.68137 * 5 3 2 7 7 C 1.70864 * 90.54641 * 179.97438 * 6 5 3 8 8 S 1.76210 * 124.60522 * 180.02562 * 7 6 5 9 9 C 1.80995 * 100.00040 * 0.31827 * 8 7 6 10 10 N 1.30229 * 110.78611 * 0.31044 * 7 6 5 11 11 C 1.31290 * 117.28182 * 359.75205 * 10 7 6 12 12 N 1.38669 * 123.17023 * 179.97438 * 11 10 7 13 13 S 1.65606 * 119.99992 * 0.02799 * 12 11 10 14 14 O 1.42098 * 106.39978 * 178.53746 * 13 12 11 15 15 O 1.42100 * 106.39855 * 311.45764 * 13 12 11 16 16 C 1.76201 * 107.21707 * 65.00165 * 13 12 11 17 17 H 1.08001 * 119.99811 * 359.97438 * 16 13 12 18 18 C 1.37880 * 119.99811 * 180.02562 * 16 13 12 19 19 N 1.31507 * 119.99801 * 179.97438 * 18 16 13 20 20 Si 1.86801 * 119.99996 * 359.97438 * 18 16 13 21 21 H 1.48500 * 109.46909 * 90.00557 * 20 18 16 22 22 H 1.48499 * 109.46982 * 210.00159 * 20 18 16 23 23 H 1.48491 * 109.47126 * 330.00252 * 20 18 16 24 24 H 1.09006 * 109.47325 * 60.00657 * 1 2 3 25 25 H 1.09005 * 109.46784 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47541 * 300.00085 * 1 2 3 27 27 H 1.09004 * 109.47121 * 59.99795 * 9 8 7 28 28 H 1.08995 * 109.47128 * 179.97438 * 9 8 7 29 29 H 1.09003 * 109.47103 * 300.00052 * 9 8 7 30 30 H 0.97002 * 120.00407 * 180.02562 * 12 11 10 31 31 H 0.97003 * 120.00439 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0421 1.2036 0.0000 4 8 1.3786 2.2251 -0.0005 5 6 3.4473 1.2773 -0.0005 6 16 4.5593 -0.0891 0.0066 7 6 5.8948 0.9768 0.0000 8 16 7.5817 0.4675 0.0015 9 6 7.3674 -1.3297 0.0012 10 7 5.4965 2.2167 -0.0002 11 6 4.2015 2.4328 -0.0006 12 7 3.6442 3.7026 -0.0003 13 16 4.6247 5.0372 -0.0002 14 8 3.7640 6.1673 -0.0347 15 8 5.5897 4.8259 1.0214 16 6 5.5065 5.0366 -1.5256 17 1 5.3424 4.2470 -2.2439 18 6 6.4069 6.0437 -1.8017 19 7 7.0654 6.0430 -2.9401 20 14 6.6913 7.4090 -0.5589 21 1 7.7890 7.0191 0.3621 22 1 7.0631 8.6575 -1.2717 23 1 5.4479 7.6356 0.2206 24 1 -0.3634 0.5137 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 6.8149 -1.6297 -0.8892 28 1 8.3447 -1.8122 0.0016 29 1 6.8133 -1.6297 0.8907 30 1 2.6801 3.8091 -0.0002 31 1 7.6992 6.7513 -3.1343 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192934657.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:06:34 Heat of formation + Delta-G solvation = -132.778355 kcal Electronic energy + Delta-G solvation = -22896.104022 eV Core-core repulsion = 19136.479761 eV Total energy + Delta-G solvation = -3759.624261 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 337.994 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.07093 -40.89017 -37.89507 -37.71121 -36.72069 -35.88603 -35.21597 -32.00631 -30.16164 -28.67783 -28.55418 -27.15530 -23.98755 -22.13339 -21.52204 -20.50097 -19.52498 -19.04745 -18.61013 -18.01870 -17.76789 -17.70081 -17.22041 -16.68671 -16.43758 -16.07743 -15.55929 -15.48182 -15.02956 -14.78759 -14.58011 -14.29697 -14.15764 -13.73977 -13.51349 -13.26408 -13.11004 -12.95696 -12.87178 -12.74130 -12.67825 -12.12014 -11.97274 -11.82003 -11.68584 -11.36640 -11.27214 -11.00956 -10.78929 -9.93508 -8.99121 -8.74435 -7.55747 -1.28565 -0.35274 -0.33014 -0.07226 0.32102 0.95096 1.01111 1.12114 1.16782 1.32947 1.69706 1.71636 1.85854 1.97894 2.38332 3.01831 3.09491 3.55634 4.00060 4.03690 4.25448 4.29546 4.33169 4.35379 4.63182 4.75609 4.88302 5.15710 5.33151 5.43853 5.94386 6.26531 6.46786 6.53001 8.18860 Molecular weight = 337.99amu Principal moments of inertia in cm(-1) A = 0.011585 B = 0.005780 C = 0.004169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2416.311518 B = 4843.272608 C = 6715.120893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.346 6.346 3 C 0.559 3.441 4 O -0.541 6.541 5 C -0.405 4.405 6 S 0.343 5.657 7 C 0.042 3.958 8 S 0.027 5.973 9 C -0.176 4.176 10 N -0.524 5.524 11 C 0.443 3.557 12 N -1.006 6.006 13 S 2.678 3.322 14 O -1.012 7.012 15 O -0.994 6.994 16 C -1.009 5.009 17 H 0.101 0.899 18 C 0.115 3.885 19 N -0.845 5.845 20 Si 0.823 3.177 21 H -0.236 1.236 22 H -0.211 1.211 23 H -0.235 1.235 24 H 0.059 0.941 25 H 0.143 0.857 26 H 0.061 0.939 27 H 0.111 0.889 28 H 0.157 0.843 29 H 0.114 0.886 30 H 0.443 0.557 31 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.823 -21.880 5.337 22.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.262 6.262 3 C 0.407 3.593 4 O -0.434 6.434 5 C -0.536 4.536 6 S 0.593 5.407 7 C -0.339 4.339 8 S 0.259 5.741 9 C -0.345 4.345 10 N -0.249 5.249 11 C 0.200 3.800 12 N -0.756 5.756 13 S 2.779 3.221 14 O -1.002 7.002 15 O -0.983 6.983 16 C -1.144 5.144 17 H 0.119 0.881 18 C -0.103 4.103 19 N -0.475 5.475 20 Si 0.640 3.360 21 H -0.159 1.159 22 H -0.133 1.133 23 H -0.158 1.158 24 H 0.078 0.922 25 H 0.161 0.839 26 H 0.080 0.920 27 H 0.130 0.870 28 H 0.175 0.825 29 H 0.133 0.867 30 H 0.286 0.714 31 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -2.335 -20.956 5.923 21.902 hybrid contribution -1.862 1.330 -0.533 2.350 sum -4.197 -19.626 5.390 20.781 Atomic orbital electron populations 1.23286 0.74579 1.06199 1.02629 1.86179 1.25422 1.30141 1.84472 1.17673 0.86409 0.82454 0.72719 1.90795 1.66507 1.36480 1.49656 1.22943 0.97208 0.97426 1.36044 1.82781 0.89000 1.02977 1.65964 1.29477 1.08089 0.95148 1.01155 1.86418 0.93362 1.07244 1.87062 1.24309 1.11070 0.90475 1.08600 1.66019 1.12824 1.21837 1.24197 1.17380 0.86814 0.85661 0.90139 1.53340 1.22512 1.16657 1.83062 1.01384 0.73295 0.70748 0.76629 1.93486 1.68715 1.48460 1.89565 1.93420 1.60426 1.84328 1.60161 1.30312 1.39100 1.20318 1.24634 0.88094 1.25047 0.91605 0.97485 0.96167 1.69979 1.21860 1.33350 1.22264 0.87530 0.83702 0.82839 0.81961 1.15895 1.13284 1.15761 0.92228 0.83929 0.92022 0.87034 0.82492 0.86744 0.71374 0.89576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 10.45 113.37 1.18 1.63 16 2 O -0.35 -8.36 10.26 -59.99 -0.62 -8.97 16 3 C 0.56 18.18 7.70 68.43 0.53 18.71 16 4 O -0.54 -20.23 14.30 18.83 0.27 -19.96 16 5 C -0.41 -13.92 6.32 22.82 0.14 -13.78 16 6 S 0.34 7.95 21.21 -56.49 -1.20 6.76 16 7 C 0.04 1.35 7.57 130.48 0.99 2.34 16 8 S 0.03 0.65 22.96 -56.49 -1.30 -0.65 16 9 C -0.18 -1.58 9.43 113.37 1.07 -0.51 16 10 N -0.52 -23.02 9.08 -196.17 -1.78 -24.80 16 11 C 0.44 19.18 7.32 133.23 0.97 20.15 16 12 N -1.01 -47.71 5.80 -56.98 -0.33 -48.04 16 13 S 2.68 149.01 3.92 -56.49 -0.22 148.79 16 14 O -1.01 -58.57 16.02 -128.00 -2.05 -60.62 16 15 O -0.99 -57.57 15.87 -128.00 -2.03 -59.61 16 16 C -1.01 -60.99 10.05 67.73 0.68 -60.31 16 17 H 0.10 6.35 8.06 -2.91 -0.02 6.32 16 18 C 0.11 6.87 5.47 84.66 0.46 7.33 16 19 N -0.84 -50.17 13.96 21.45 0.30 -49.87 16 20 Si 0.82 42.64 26.54 68.60 1.82 44.46 16 21 H -0.24 -11.83 7.11 99.48 0.71 -11.13 16 22 H -0.21 -9.45 7.11 99.48 0.71 -8.75 16 23 H -0.23 -12.60 5.61 99.48 0.56 -12.05 16 24 H 0.06 1.06 8.13 -2.38 -0.02 1.04 16 25 H 0.14 1.21 8.14 -2.38 -0.02 1.19 16 26 H 0.06 1.06 8.13 -2.39 -0.02 1.04 16 27 H 0.11 0.74 7.96 -2.39 -0.02 0.73 16 28 H 0.16 0.55 8.14 -2.40 -0.02 0.53 16 29 H 0.11 0.67 7.95 -2.39 -0.02 0.65 16 30 H 0.44 19.51 6.37 -96.74 -0.62 18.89 16 31 H 0.29 15.58 8.31 -92.71 -0.77 14.80 16 Total: -1.00 -82.99 315.21 -0.66 -83.65 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: 0.45 Total: 13.29 kcal Atomic # 6 Polarization: -30.47 SS G_CDS: 6.03 Total: -24.44 kcal Atomic # 7 Polarization: -120.89 SS G_CDS: -1.81 Total: -122.71 kcal Atomic # 8 Polarization: -144.73 SS G_CDS: -4.43 Total: -149.16 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 1.82 Total: 44.46 kcal Atomic # 16 Polarization: 157.62 SS G_CDS: -2.72 Total: 154.90 kcal Total: -82.99 -0.66 -83.65 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192934657.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.125 kcal (2) G-P(sol) polarization free energy of solvation -82.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds