Wall clock time and date at job start Tue Mar 31 2020 21:34:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 119.99967 * 2 1 4 4 H 1.48497 * 109.46970 * 269.99443 * 3 2 1 5 5 H 1.48493 * 109.47304 * 29.99810 * 3 2 1 6 6 H 1.48500 * 109.47265 * 149.99759 * 3 2 1 7 7 C 1.37875 * 119.99906 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00131 * 0.02562 * 7 2 1 9 9 S 1.76205 * 119.99752 * 180.02562 * 7 2 1 10 10 O 1.42105 * 106.40127 * 66.46362 * 9 7 2 11 11 O 1.42097 * 106.40488 * 293.53983 * 9 7 2 12 12 N 1.65607 * 107.21441 * 180.02562 * 9 7 2 13 13 C 1.39945 * 119.99919 * 65.00284 * 12 9 7 14 14 C 1.38971 * 120.50859 * 35.27593 * 13 12 9 15 15 C 1.38755 * 118.41902 * 180.22209 * 14 13 12 16 16 C 1.38064 * 119.35180 * 359.48062 * 15 14 13 17 17 N 1.32007 * 120.98149 * 0.27776 * 16 15 14 18 18 C 1.32145 * 121.71808 * 359.97438 * 17 16 15 19 19 O 1.35764 * 119.73104 * 180.02562 * 18 17 16 20 20 C 1.35943 * 117.99448 * 354.89832 * 19 18 17 21 21 C 1.38684 * 120.06481 * 265.66358 * 20 19 18 22 22 C 1.38174 * 119.97018 * 180.02562 * 21 20 19 23 23 C 1.38273 * 120.09140 * 0.02562 * 22 21 20 24 24 C 1.38249 * 120.13671 * 0.02562 * 23 22 21 25 25 C 1.38335 * 120.02910 * 359.67314 * 24 23 22 26 26 F 1.35104 * 120.04748 * 180.32516 * 25 24 23 27 27 H 0.97002 * 120.00173 * 0.02562 * 1 2 3 28 28 H 0.96998 * 120.00028 * 244.99989 * 12 9 7 29 29 H 1.08001 * 120.78667 * 0.02562 * 14 13 12 30 30 H 1.08001 * 120.32312 * 179.75487 * 15 14 13 31 31 H 1.08006 * 119.51254 * 180.25644 * 16 15 14 32 32 H 1.08003 * 120.01938 * 0.02836 * 21 20 19 33 33 H 1.07996 * 119.94984 * 180.02562 * 22 21 20 34 34 H 1.08002 * 119.92835 * 179.97438 * 23 22 21 35 35 H 1.07993 * 119.98793 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 16 3.7665 -1.1940 0.0012 10 8 4.1673 -0.6493 1.2511 11 8 4.1683 -0.6499 -1.2484 12 7 4.2567 -2.7759 0.0011 13 6 3.9750 -3.5956 -1.0977 14 6 3.9841 -3.0757 -2.3865 15 6 3.6940 -3.9262 -3.4437 16 6 3.4181 -5.2545 -3.1875 17 7 3.4211 -5.7235 -1.9535 18 6 3.6869 -4.9488 -0.9165 19 8 3.6795 -5.4737 0.3355 20 6 3.2916 -6.7683 0.4823 21 6 1.9728 -7.0680 0.7895 22 6 1.5809 -8.3845 0.9388 23 6 2.5019 -9.4040 0.7830 24 6 3.8179 -9.1099 0.4779 25 6 4.2147 -7.7940 0.3210 26 9 5.4992 -7.5065 0.0164 27 1 -0.4850 0.8400 -0.0004 28 1 4.7390 -3.1342 0.7625 29 1 4.2084 -2.0337 -2.5606 30 1 3.6885 -3.5538 -4.4574 31 1 3.1960 -5.9198 -4.0089 32 1 1.2524 -6.2727 0.9118 33 1 0.5537 -8.6175 1.1776 34 1 2.1928 -10.4321 0.9007 35 1 4.5353 -9.9080 0.3571 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192938333.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:34:46 Heat of formation + Delta-G solvation = -77.433960 kcal Electronic energy + Delta-G solvation = -26874.340573 eV Core-core repulsion = 22687.125287 eV Total energy + Delta-G solvation = -4187.215286 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 338.057 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -48.93133 -40.89204 -39.25254 -37.52746 -35.99140 -35.11067 -34.68787 -33.13271 -31.53832 -30.86854 -30.18213 -28.64489 -26.52586 -24.30240 -23.03310 -22.90382 -22.10101 -19.33102 -19.00054 -17.99414 -17.78745 -17.49879 -16.90589 -16.84055 -16.28748 -15.55587 -15.48314 -15.29593 -14.88630 -14.78172 -14.24696 -14.18084 -13.98087 -13.57073 -13.40408 -13.01008 -12.97644 -12.56053 -12.42768 -12.19666 -11.94545 -11.84758 -11.48711 -11.15907 -11.11111 -10.87970 -10.76078 -10.60122 -10.06072 -9.43769 -9.30834 -9.29183 -9.14109 -9.04524 -8.78284 -7.81064 -6.89215 -5.45888 0.83181 1.02207 1.29832 1.48402 1.82635 2.90511 3.00407 3.10117 3.18513 3.58659 3.85596 3.93545 3.96579 4.06893 4.49799 4.49863 4.58596 4.76618 4.95983 5.02828 5.11156 5.15390 5.17330 5.32637 5.44849 5.71929 5.84198 5.87192 5.90255 6.06012 6.12160 6.18275 6.28607 6.44328 6.61880 6.82423 7.34266 7.40320 7.55933 8.01534 8.11990 8.59250 10.22882 Molecular weight = 338.06amu Principal moments of inertia in cm(-1) A = 0.017231 B = 0.003928 C = 0.003728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1624.610110 B = 7127.335982 C = 7508.663167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.817 5.817 2 C 0.155 3.845 3 Si 0.801 3.199 4 H -0.244 1.244 5 H -0.253 1.253 6 H -0.221 1.221 7 C -1.010 5.010 8 H 0.123 0.877 9 S 2.667 3.333 10 O -0.994 6.994 11 O -1.002 7.002 12 N -1.048 6.048 13 C 0.134 3.866 14 C -0.094 4.094 15 C -0.169 4.169 16 C 0.102 3.898 17 N -0.512 5.512 18 C 0.282 3.718 19 O -0.241 6.241 20 C 0.072 3.928 21 C -0.088 4.088 22 C -0.119 4.119 23 C -0.092 4.092 24 C -0.149 4.149 25 C 0.103 3.897 26 F -0.131 7.131 27 H 0.282 0.718 28 H 0.421 0.579 29 H 0.188 0.812 30 H 0.143 0.857 31 H 0.159 0.841 32 H 0.142 0.858 33 H 0.136 0.864 34 H 0.135 0.865 35 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.041 -16.141 -2.695 16.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C -0.066 4.066 3 Si 0.621 3.379 4 H -0.167 1.167 5 H -0.177 1.177 6 H -0.143 1.143 7 C -1.145 5.145 8 H 0.141 0.859 9 S 2.771 3.229 10 O -0.984 6.984 11 O -0.992 6.992 12 N -0.792 5.792 13 C 0.033 3.967 14 C -0.122 4.122 15 C -0.190 4.190 16 C -0.054 4.054 17 N -0.234 5.234 18 C 0.101 3.899 19 O -0.147 6.147 20 C 0.028 3.972 21 C -0.106 4.106 22 C -0.137 4.137 23 C -0.110 4.110 24 C -0.168 4.168 25 C 0.083 3.917 26 F -0.110 7.110 27 H 0.093 0.907 28 H 0.255 0.745 29 H 0.205 0.795 30 H 0.161 0.839 31 H 0.176 0.824 32 H 0.160 0.840 33 H 0.153 0.847 34 H 0.153 0.847 35 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 4.335 -15.924 -2.388 16.676 hybrid contribution 0.042 0.997 0.127 1.006 sum 4.377 -14.927 -2.262 15.719 Atomic orbital electron populations 1.69976 1.06545 1.29207 1.38824 1.24400 0.94820 0.98706 0.88627 0.87864 0.83544 0.84496 0.81994 1.16735 1.17668 1.14300 1.30239 1.14504 1.02464 1.67296 0.85927 1.01813 0.77859 0.69662 0.73604 1.93507 1.85640 1.74689 1.44576 1.93303 1.85334 1.75574 1.44946 1.53431 1.69814 1.31272 1.24694 1.17383 1.02958 0.87883 0.88428 1.22600 0.96405 1.04093 0.89136 1.21934 1.02585 0.94159 1.00315 1.22267 0.96946 0.94094 0.92082 1.67187 1.18307 1.38055 0.99893 1.19765 0.97084 0.88949 0.84112 1.84646 1.81897 1.24222 1.23971 1.18550 0.92662 0.82162 1.03796 1.21342 0.93715 0.97973 0.97615 1.21090 1.00331 0.91602 1.00709 1.21051 0.92042 0.99900 0.97982 1.21040 0.97880 0.94136 1.03718 1.18008 0.79265 0.93377 1.01045 1.91507 1.34744 1.94339 1.90388 0.90705 0.74489 0.79488 0.83941 0.82419 0.84038 0.84650 0.84730 0.84363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -23.06 13.96 55.43 0.77 -22.28 16 2 C 0.15 4.34 5.47 -17.82 -0.10 4.24 16 3 Si 0.80 19.88 26.54 -169.99 -4.51 15.36 16 4 H -0.24 -5.83 7.11 56.52 0.40 -5.42 16 5 H -0.25 -5.78 7.11 56.52 0.40 -5.38 16 6 H -0.22 -5.58 5.61 56.52 0.32 -5.26 16 7 C -1.01 -27.70 10.22 30.60 0.31 -27.39 16 8 H 0.12 3.48 8.06 -52.49 -0.42 3.05 16 9 S 2.67 65.13 4.09 -107.50 -0.44 64.69 16 10 O -0.99 -26.12 16.02 -57.17 -0.92 -27.03 16 11 O -1.00 -24.70 13.57 -57.17 -0.78 -25.47 16 12 N -1.05 -21.29 5.66 32.60 0.18 -21.11 16 13 C 0.13 2.63 6.38 -83.40 -0.53 2.10 16 14 C -0.09 -1.72 9.33 -39.12 -0.37 -2.09 16 15 C -0.17 -2.48 10.10 -39.45 -0.40 -2.88 16 16 C 0.10 1.46 11.17 -17.54 -0.20 1.27 16 17 N -0.51 -8.69 9.31 -13.16 -0.12 -8.81 16 18 C 0.28 5.25 7.48 -16.93 -0.13 5.13 16 19 O -0.24 -4.36 9.41 -3.33 -0.03 -4.39 16 20 C 0.07 1.12 4.97 -39.16 -0.19 0.92 16 21 C -0.09 -1.16 9.99 -39.44 -0.39 -1.56 16 22 C -0.12 -1.19 10.04 -39.59 -0.40 -1.59 16 23 C -0.09 -0.82 10.04 -39.56 -0.40 -1.22 16 24 C -0.15 -1.58 10.02 -39.54 -0.40 -1.98 16 25 C 0.10 1.46 7.30 -39.29 -0.29 1.17 16 26 F -0.13 -2.04 17.11 2.25 0.04 -2.00 16 27 H 0.28 7.20 8.31 -40.82 -0.34 6.86 16 28 H 0.42 7.55 8.72 -34.48 -0.30 7.24 16 29 H 0.19 3.63 5.15 -52.49 -0.27 3.36 16 30 H 0.14 1.59 8.06 -52.49 -0.42 1.16 16 31 H 0.16 1.64 8.06 -52.48 -0.42 1.22 16 32 H 0.14 1.86 8.06 -52.48 -0.42 1.44 16 33 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 34 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 35 H 0.14 1.13 8.06 -52.49 -0.42 0.70 16 LS Contribution 326.58 15.07 4.92 4.92 Total: -1.00 -33.00 326.58 -7.10 -40.10 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: -2.75 Total: 9.89 kcal Atomic # 6 Polarization: -20.40 SS G_CDS: -3.47 Total: -23.87 kcal Atomic # 7 Polarization: -53.03 SS G_CDS: 0.84 Total: -52.20 kcal Atomic # 8 Polarization: -55.17 SS G_CDS: -1.72 Total: -56.90 kcal Atomic # 9 Polarization: -2.04 SS G_CDS: 0.04 Total: -2.00 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -4.51 Total: 15.36 kcal Atomic # 16 Polarization: 65.13 SS G_CDS: -0.44 Total: 64.69 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -33.00 -7.10 -40.10 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192938333.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.331 kcal (2) G-P(sol) polarization free energy of solvation -33.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds