Wall clock time and date at job start Tue Mar 31 2020 21:34:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 119.99967 * 2 1 4 4 H 1.48497 * 109.46970 * 269.99443 * 3 2 1 5 5 H 1.48493 * 109.47304 * 29.99810 * 3 2 1 6 6 H 1.48500 * 109.47265 * 149.99759 * 3 2 1 7 7 C 1.37875 * 119.99906 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00131 * 0.02562 * 7 2 1 9 9 S 1.76205 * 119.99752 * 180.02562 * 7 2 1 10 10 O 1.42105 * 106.40127 * 66.46362 * 9 7 2 11 11 O 1.42097 * 106.40488 * 293.53983 * 9 7 2 12 12 N 1.65607 * 107.21441 * 180.02562 * 9 7 2 13 13 C 1.39945 * 119.99919 * 65.00284 * 12 9 7 14 14 C 1.38971 * 120.50859 * 35.27593 * 13 12 9 15 15 C 1.38755 * 118.41902 * 180.22209 * 14 13 12 16 16 C 1.38064 * 119.35180 * 359.48062 * 15 14 13 17 17 N 1.32007 * 120.98149 * 0.27776 * 16 15 14 18 18 C 1.32145 * 121.71808 * 359.97438 * 17 16 15 19 19 O 1.35764 * 119.73104 * 180.02562 * 18 17 16 20 20 C 1.35943 * 117.99448 * 354.89832 * 19 18 17 21 21 C 1.38684 * 120.06481 * 265.66358 * 20 19 18 22 22 C 1.38174 * 119.97018 * 180.02562 * 21 20 19 23 23 C 1.38273 * 120.09140 * 0.02562 * 22 21 20 24 24 C 1.38249 * 120.13671 * 0.02562 * 23 22 21 25 25 C 1.38335 * 120.02910 * 359.67314 * 24 23 22 26 26 F 1.35104 * 120.04748 * 180.32516 * 25 24 23 27 27 H 0.97002 * 120.00173 * 0.02562 * 1 2 3 28 28 H 0.96998 * 120.00028 * 244.99989 * 12 9 7 29 29 H 1.08001 * 120.78667 * 0.02562 * 14 13 12 30 30 H 1.08001 * 120.32312 * 179.75487 * 15 14 13 31 31 H 1.08006 * 119.51254 * 180.25644 * 16 15 14 32 32 H 1.08003 * 120.01938 * 0.02836 * 21 20 19 33 33 H 1.07996 * 119.94984 * 180.02562 * 22 21 20 34 34 H 1.08002 * 119.92835 * 179.97438 * 23 22 21 35 35 H 1.07993 * 119.98793 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 16 3.7665 -1.1940 0.0012 10 8 4.1673 -0.6493 1.2511 11 8 4.1683 -0.6499 -1.2484 12 7 4.2567 -2.7759 0.0011 13 6 3.9750 -3.5956 -1.0977 14 6 3.9841 -3.0757 -2.3865 15 6 3.6940 -3.9262 -3.4437 16 6 3.4181 -5.2545 -3.1875 17 7 3.4211 -5.7235 -1.9535 18 6 3.6869 -4.9488 -0.9165 19 8 3.6795 -5.4737 0.3355 20 6 3.2916 -6.7683 0.4823 21 6 1.9728 -7.0680 0.7895 22 6 1.5809 -8.3845 0.9388 23 6 2.5019 -9.4040 0.7830 24 6 3.8179 -9.1099 0.4779 25 6 4.2147 -7.7940 0.3210 26 9 5.4992 -7.5065 0.0164 27 1 -0.4850 0.8400 -0.0004 28 1 4.7390 -3.1342 0.7625 29 1 4.2084 -2.0337 -2.5606 30 1 3.6885 -3.5538 -4.4574 31 1 3.1960 -5.9198 -4.0089 32 1 1.2524 -6.2727 0.9118 33 1 0.5537 -8.6175 1.1776 34 1 2.1928 -10.4321 0.9007 35 1 4.5353 -9.9080 0.3571 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192938333.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:34:46 Heat of formation + Delta-G solvation = -102.973085 kcal Electronic energy + Delta-G solvation = -26875.448033 eV Core-core repulsion = 22687.125287 eV Total energy + Delta-G solvation = -4188.322746 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 338.057 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -50.01301 -42.13547 -40.35841 -38.60580 -37.93567 -36.75327 -36.60117 -35.25175 -32.79396 -31.80132 -31.23303 -29.93352 -28.65212 -25.49586 -24.25597 -23.95068 -23.17014 -21.23858 -20.20665 -19.74774 -19.39921 -18.74356 -18.50419 -17.93412 -17.59796 -17.24740 -16.67423 -16.59147 -16.18970 -16.04739 -15.86088 -15.56240 -15.32854 -15.05476 -14.96860 -14.50820 -14.43455 -13.92984 -13.63028 -13.44115 -13.42383 -13.19057 -13.06261 -12.81505 -12.75885 -12.53042 -12.49609 -12.07865 -11.95984 -11.37225 -11.29201 -10.75845 -10.50071 -10.05096 -9.73208 -9.20478 -9.00982 -7.61256 -0.25950 -0.12053 0.12426 0.13304 0.20052 1.03971 1.13508 1.19584 1.82220 1.86060 2.18021 2.37757 2.62070 2.69685 3.06459 3.11156 3.32667 3.71097 3.73101 3.81700 3.97914 3.99600 4.11989 4.26637 4.28104 4.36339 4.63369 4.80444 4.94098 4.97335 5.03585 5.16649 5.21845 5.32126 5.34373 5.47770 5.72807 5.89445 5.94198 6.30921 6.45414 6.75168 8.16861 Molecular weight = 338.06amu Principal moments of inertia in cm(-1) A = 0.017231 B = 0.003928 C = 0.003728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1624.610110 B = 7127.335982 C = 7508.663167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.848 5.848 2 C 0.112 3.888 3 Si 0.827 3.173 4 H -0.229 1.229 5 H -0.219 1.219 6 H -0.231 1.231 7 C -1.033 5.033 8 H 0.098 0.902 9 S 2.695 3.305 10 O -1.015 7.015 11 O -1.005 7.005 12 N -1.041 6.041 13 C 0.095 3.905 14 C -0.113 4.113 15 C -0.160 4.160 16 C 0.112 3.888 17 N -0.519 5.519 18 C 0.273 3.727 19 O -0.261 6.261 20 C 0.034 3.966 21 C -0.108 4.108 22 C -0.108 4.108 23 C -0.074 4.074 24 C -0.141 4.141 25 C 0.076 3.924 26 F -0.148 7.148 27 H 0.294 0.706 28 H 0.428 0.572 29 H 0.174 0.826 30 H 0.184 0.816 31 H 0.206 0.794 32 H 0.128 0.872 33 H 0.168 0.832 34 H 0.181 0.819 35 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.750 -18.409 -3.920 19.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.478 5.478 2 C -0.106 4.106 3 Si 0.643 3.357 4 H -0.151 1.151 5 H -0.141 1.141 6 H -0.153 1.153 7 C -1.166 5.166 8 H 0.116 0.884 9 S 2.797 3.203 10 O -1.006 7.006 11 O -0.994 6.994 12 N -0.789 5.789 13 C -0.004 4.004 14 C -0.141 4.141 15 C -0.180 4.180 16 C -0.044 4.044 17 N -0.242 5.242 18 C 0.092 3.908 19 O -0.167 6.167 20 C -0.009 4.009 21 C -0.127 4.127 22 C -0.126 4.126 23 C -0.091 4.091 24 C -0.159 4.159 25 C 0.057 3.943 26 F -0.127 7.127 27 H 0.104 0.896 28 H 0.264 0.736 29 H 0.191 0.809 30 H 0.201 0.799 31 H 0.223 0.777 32 H 0.146 0.854 33 H 0.185 0.815 34 H 0.199 0.801 35 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 4.011 -18.193 -3.603 18.975 hybrid contribution 0.073 1.443 0.440 1.511 sum 4.084 -16.749 -3.163 17.528 Atomic orbital electron populations 1.70002 1.07529 1.30747 1.39521 1.25160 0.95672 1.01400 0.88371 0.87457 0.82673 0.82335 0.83199 1.15147 1.14084 1.15327 1.30687 1.16935 1.01681 1.67305 0.88398 1.00871 0.76183 0.70364 0.72920 1.93468 1.85403 1.76134 1.45568 1.93299 1.84777 1.76548 1.44809 1.52906 1.69900 1.30308 1.25765 1.17646 1.05748 0.88577 0.88460 1.22691 0.97409 1.04155 0.89891 1.22379 1.00660 0.93847 1.01138 1.23139 0.94255 0.94718 0.92290 1.67321 1.18440 1.37936 1.00473 1.19883 0.97076 0.88843 0.84988 1.84606 1.82094 1.26043 1.23988 1.18965 0.94117 0.81447 1.06325 1.21443 0.92772 0.99491 0.98987 1.21504 1.02165 0.90180 0.98763 1.21588 0.90745 1.01723 0.95086 1.21457 0.99331 0.93044 1.02072 1.18356 0.78559 0.94595 1.02810 1.91455 1.35759 1.94624 1.90815 0.89565 0.73595 0.80889 0.79897 0.77735 0.85377 0.81483 0.80143 0.81594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -48.73 13.96 21.45 0.30 -48.43 16 2 C 0.11 6.36 5.47 84.65 0.46 6.83 16 3 Si 0.83 40.13 26.54 68.60 1.82 41.95 16 4 H -0.23 -10.48 7.11 99.48 0.71 -9.77 16 5 H -0.22 -9.37 7.11 99.48 0.71 -8.66 16 6 H -0.23 -11.55 5.61 99.48 0.56 -10.99 16 7 C -1.03 -58.89 10.22 67.73 0.69 -58.20 16 8 H 0.10 5.90 8.06 -2.91 -0.02 5.88 16 9 S 2.70 135.59 4.09 -56.49 -0.23 135.36 16 10 O -1.02 -54.64 16.02 -128.00 -2.05 -56.69 16 11 O -1.00 -50.35 13.57 -128.00 -1.74 -52.08 16 12 N -1.04 -44.46 5.66 -50.78 -0.29 -44.75 16 13 C 0.10 3.88 6.38 38.33 0.24 4.12 16 14 C -0.11 -4.18 9.33 22.57 0.21 -3.97 16 15 C -0.16 -4.41 10.10 22.35 0.23 -4.19 16 16 C 0.11 2.96 11.17 84.63 0.95 3.91 16 17 N -0.52 -17.39 9.31 -308.42 -2.87 -20.27 16 18 C 0.27 10.50 7.48 84.96 0.64 11.14 16 19 O -0.26 -9.99 9.41 -34.85 -0.33 -10.32 16 20 C 0.03 1.10 4.97 22.54 0.11 1.21 16 21 C -0.11 -2.89 9.99 22.36 0.22 -2.67 16 22 C -0.11 -1.88 10.04 22.26 0.22 -1.65 16 23 C -0.07 -1.02 10.04 22.28 0.22 -0.80 16 24 C -0.14 -2.60 10.02 22.30 0.22 -2.38 16 25 C 0.08 2.15 7.30 22.46 0.16 2.31 16 26 F -0.15 -4.69 17.11 44.97 0.77 -3.92 16 27 H 0.29 15.07 8.31 -92.71 -0.77 14.30 16 28 H 0.43 16.42 8.72 -96.74 -0.84 15.57 16 29 H 0.17 6.86 5.15 -2.91 -0.01 6.85 16 30 H 0.18 3.44 8.06 -2.91 -0.02 3.41 16 31 H 0.21 3.37 8.06 -2.91 -0.02 3.34 16 32 H 0.13 3.61 8.06 -2.91 -0.02 3.59 16 33 H 0.17 1.79 8.06 -2.91 -0.02 1.77 16 34 H 0.18 0.91 8.06 -2.91 -0.02 0.88 16 35 H 0.17 2.09 8.06 -2.91 -0.02 2.07 16 Total: -1.00 -75.40 326.58 0.15 -75.25 By element: Atomic # 1 Polarization: 28.06 SS G_CDS: 0.18 Total: 28.24 kcal Atomic # 6 Polarization: -48.92 SS G_CDS: 4.59 Total: -44.34 kcal Atomic # 7 Polarization: -110.59 SS G_CDS: -2.86 Total: -113.45 kcal Atomic # 8 Polarization: -114.98 SS G_CDS: -4.12 Total: -119.09 kcal Atomic # 9 Polarization: -4.69 SS G_CDS: 0.77 Total: -3.92 kcal Atomic # 14 Polarization: 40.13 SS G_CDS: 1.82 Total: 41.95 kcal Atomic # 16 Polarization: 135.59 SS G_CDS: -0.23 Total: 135.36 kcal Total: -75.40 0.15 -75.25 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192938333.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.720 kcal (2) G-P(sol) polarization free energy of solvation -75.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds