Wall clock time and date at job start Tue Mar 31 2020 20:05:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21267 * 120.00409 * 2 1 4 4 C 1.47022 * 119.99542 * 180.02562 * 2 1 3 5 5 C 1.40304 * 120.99561 * 5.35863 * 4 2 1 6 6 C 1.37924 * 119.08043 * 179.97438 * 5 4 2 7 7 Cl 1.73594 * 119.42481 * 180.02562 * 6 5 4 8 8 N 1.32089 * 121.15549 * 0.07060 * 6 5 4 9 9 C 1.31624 * 122.22884 * 359.97007 * 8 6 5 10 10 Cl 1.73597 * 119.61755 * 180.02562 * 9 8 6 11 11 C 1.39370 * 120.76601 * 359.97438 * 9 8 6 12 12 N 1.38823 * 120.62333 * 179.74672 * 11 9 8 13 13 S 1.65598 * 119.99867 * 68.46320 * 12 11 9 14 14 O 1.42097 * 106.40219 * 180.02562 * 13 12 11 15 15 O 1.42101 * 106.40411 * 312.95073 * 13 12 11 16 16 C 1.76198 * 107.21801 * 66.49134 * 13 12 11 17 17 H 1.08002 * 119.99913 * 359.97438 * 16 13 12 18 18 C 1.37877 * 120.00199 * 179.97438 * 16 13 12 19 19 N 1.31514 * 119.99643 * 0.02562 * 18 16 13 20 20 Si 1.86798 * 120.00177 * 179.97438 * 18 16 13 21 21 H 1.48499 * 109.47135 * 89.99971 * 20 18 16 22 22 H 1.48501 * 109.47002 * 209.99958 * 20 18 16 23 23 H 1.48494 * 109.47086 * 329.99850 * 20 18 16 24 24 H 1.08990 * 109.47570 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46808 * 300.00110 * 1 2 3 26 26 H 1.09006 * 109.47035 * 59.99117 * 1 2 3 27 27 H 1.08005 * 120.46256 * 0.02562 * 5 4 2 28 28 H 0.96999 * 119.99758 * 248.46939 * 12 11 9 29 29 H 0.97001 * 119.99765 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0502 0.0000 4 6 2.2420 -1.2733 -0.0006 5 6 1.5662 -2.4976 -0.1134 6 6 2.2951 -3.6685 -0.1102 7 17 1.4681 -5.1884 -0.2500 8 7 3.6115 -3.6537 -0.0017 9 6 4.2942 -2.5338 0.1077 10 17 6.0237 -2.5933 0.2458 11 6 3.6449 -1.3006 0.1128 12 7 4.3675 -0.1214 0.2335 13 16 5.3602 0.3710 -0.9971 14 8 5.9488 1.5930 -0.5733 15 8 6.1210 -0.7669 -1.3788 16 6 4.3308 0.7651 -2.3717 17 1 3.2590 0.6592 -2.2916 18 6 4.8935 1.2088 -3.5496 19 7 6.1987 1.3373 -3.6473 20 14 3.8022 1.6259 -5.0072 21 1 3.4155 3.0582 -4.9421 22 1 4.5422 1.3697 -6.2689 23 1 2.5814 0.7814 -4.9691 24 1 -0.3634 -1.0275 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5140 -0.8900 27 1 0.4901 -2.5229 -0.2025 28 1 4.2910 0.4140 1.0387 29 1 6.5946 1.6497 -4.4759 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192938544.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:05:10 Heat of formation + Delta-G solvation = -81.120587 kcal Electronic energy + Delta-G solvation = -23165.443483 eV Core-core repulsion = 19268.138764 eV Total energy + Delta-G solvation = -3897.304719 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 337.973 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.81916 -38.84080 -36.97260 -36.19552 -35.38523 -35.00604 -34.04854 -33.14567 -33.00320 -29.81745 -29.08574 -26.17274 -24.93451 -23.24157 -20.42523 -19.25472 -18.18330 -17.67828 -17.22016 -16.94203 -16.39748 -15.26858 -15.12561 -15.02311 -14.91447 -14.64182 -14.45681 -14.03125 -13.65598 -13.07629 -12.35493 -12.30427 -12.26552 -12.10965 -11.62345 -11.47025 -11.25833 -11.20629 -10.96821 -10.81963 -10.63812 -10.43874 -10.33848 -10.25045 -9.93241 -9.75626 -9.27877 -9.17539 -8.93313 -8.36040 -6.73429 -5.34378 0.27177 0.60034 1.45944 2.09922 2.17308 2.30802 3.04639 3.10706 3.15935 3.36120 3.73707 3.97102 4.21956 4.51635 4.60218 4.61908 4.72339 4.83288 5.14649 5.23195 5.29151 5.49013 5.63413 5.83296 5.87404 6.34052 6.54530 7.26457 7.29959 7.44190 7.58435 7.93366 8.85733 10.21022 Molecular weight = 337.97amu Principal moments of inertia in cm(-1) A = 0.011901 B = 0.005981 C = 0.005169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2352.242504 B = 4680.171219 C = 5415.862888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.388 3.612 3 O -0.407 6.407 4 C -0.114 4.114 5 C -0.108 4.108 6 C 0.169 3.831 7 Cl -0.022 7.022 8 N -0.447 5.447 9 C 0.187 3.813 10 Cl 0.036 6.964 11 C 0.197 3.803 12 N -1.062 6.062 13 S 2.695 3.305 14 O -0.991 6.991 15 O -0.978 6.978 16 C -1.008 5.008 17 H 0.100 0.900 18 C 0.135 3.865 19 N -0.843 5.843 20 Si 0.919 3.081 21 H -0.266 1.266 22 H -0.274 1.274 23 H -0.263 1.263 24 H 0.082 0.918 25 H 0.097 0.903 26 H 0.099 0.901 27 H 0.163 0.837 28 H 0.421 0.579 29 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.089 -8.055 7.713 17.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C 0.262 3.738 3 O -0.278 6.278 4 C -0.126 4.126 5 C -0.130 4.130 6 C 0.006 3.994 7 Cl 0.006 6.994 8 N -0.162 5.162 9 C 0.017 3.983 10 Cl 0.065 6.935 11 C 0.094 3.906 12 N -0.810 5.810 13 S 2.796 3.204 14 O -0.981 6.981 15 O -0.968 6.968 16 C -1.142 5.142 17 H 0.118 0.882 18 C -0.083 4.083 19 N -0.473 5.473 20 Si 0.743 3.257 21 H -0.191 1.191 22 H -0.198 1.198 23 H -0.188 1.188 24 H 0.101 0.899 25 H 0.116 0.884 26 H 0.118 0.882 27 H 0.180 0.820 28 H 0.259 0.741 29 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -11.043 -8.340 7.558 15.768 hybrid contribution -1.511 0.887 -0.831 1.939 sum -12.554 -7.453 6.726 16.074 Atomic orbital electron populations 1.22213 0.92841 1.04796 1.05467 1.22182 0.91668 0.86720 0.73261 1.90678 1.71566 1.33112 1.32428 1.21318 0.93285 0.96062 1.01940 1.22086 1.01955 0.89461 0.99450 1.21159 0.88577 0.87965 1.01712 1.98407 1.74839 1.30154 1.95982 1.66129 1.07816 1.30438 1.11791 1.22205 0.90169 0.87491 0.98423 1.98491 1.02317 1.98080 1.94605 1.17993 0.89748 0.86807 0.96099 1.53946 1.62480 1.28782 1.35742 1.01370 0.73112 0.73115 0.72783 1.93394 1.75948 1.45915 1.82854 1.93517 1.68804 1.52159 1.82301 1.30360 1.07913 1.60501 1.15402 0.88213 1.24704 0.95088 0.89573 0.98939 1.69883 1.10310 1.37701 1.29423 0.86181 0.80439 0.79624 0.79458 1.19073 1.19846 1.18756 0.89892 0.88409 0.88223 0.82006 0.74145 0.89828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.65 10.20 36.01 0.37 -1.28 15 2 C 0.39 5.41 7.22 -30.75 -0.22 5.18 15 3 O -0.41 -7.34 15.22 5.57 0.08 -7.26 15 4 C -0.11 -1.68 5.92 -104.60 -0.62 -2.30 15 5 C -0.11 -1.27 9.25 -38.92 -0.36 -1.63 15 6 C 0.17 2.33 7.26 -17.56 -0.13 2.20 15 7 Cl -0.02 -0.25 29.09 -51.86 -1.51 -1.76 15 8 N -0.45 -7.54 10.27 -7.40 -0.08 -7.62 15 9 C 0.19 3.48 7.03 -17.22 -0.12 3.36 15 10 Cl 0.04 0.71 24.87 -51.86 -1.29 -0.58 15 11 C 0.20 3.60 5.95 -83.32 -0.50 3.10 15 12 N -1.06 -21.56 3.57 32.70 0.12 -21.44 15 13 S 2.69 71.07 4.93 -107.50 -0.53 70.54 15 14 O -0.99 -29.10 18.02 -57.17 -1.03 -30.13 15 15 O -0.98 -26.87 13.59 -57.17 -0.78 -27.64 15 16 C -1.01 -27.81 9.70 30.60 0.30 -27.51 15 17 H 0.10 2.57 7.27 -52.49 -0.38 2.19 15 18 C 0.14 3.77 5.46 -17.82 -0.10 3.67 15 19 N -0.84 -24.63 13.19 55.43 0.73 -23.90 15 20 Si 0.92 20.69 29.54 -169.99 -5.02 15.67 15 21 H -0.27 -5.80 7.11 56.52 0.40 -5.40 15 22 H -0.27 -5.88 7.11 56.52 0.40 -5.48 15 23 H -0.26 -5.68 7.11 56.52 0.40 -5.28 15 24 H 0.08 0.46 5.73 -51.93 -0.30 0.16 15 25 H 0.10 0.66 8.14 -51.93 -0.42 0.24 15 26 H 0.10 0.81 8.14 -51.93 -0.42 0.39 15 27 H 0.16 1.17 6.10 -52.48 -0.32 0.85 15 28 H 0.42 7.42 8.66 -34.47 -0.30 7.12 15 29 H 0.29 7.66 8.31 -40.82 -0.34 7.32 15 LS Contribution 303.94 15.07 4.58 4.58 Total: -1.00 -35.26 303.94 -7.37 -42.64 By element: Atomic # 1 Polarization: 3.39 SS G_CDS: -1.28 Total: 2.11 kcal Atomic # 6 Polarization: -13.83 SS G_CDS: -1.38 Total: -15.21 kcal Atomic # 7 Polarization: -53.73 SS G_CDS: 0.77 Total: -52.96 kcal Atomic # 8 Polarization: -63.31 SS G_CDS: -1.72 Total: -65.03 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Atomic # 16 Polarization: 71.07 SS G_CDS: -0.53 Total: 70.54 kcal Atomic # 17 Polarization: 0.46 SS G_CDS: -2.80 Total: -2.34 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -35.26 -7.37 -42.64 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192938544.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.483 kcal (2) G-P(sol) polarization free energy of solvation -35.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds