Wall clock time and date at job start Tue Mar 31 2020 20:05:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21267 * 120.00409 * 2 1 4 4 C 1.47022 * 119.99542 * 180.02562 * 2 1 3 5 5 C 1.40304 * 120.99561 * 5.35863 * 4 2 1 6 6 C 1.37924 * 119.08043 * 179.97438 * 5 4 2 7 7 Cl 1.73594 * 119.42481 * 180.02562 * 6 5 4 8 8 N 1.32089 * 121.15549 * 0.07060 * 6 5 4 9 9 C 1.31624 * 122.22884 * 359.97007 * 8 6 5 10 10 Cl 1.73597 * 119.61755 * 180.02562 * 9 8 6 11 11 C 1.39370 * 120.76601 * 359.97438 * 9 8 6 12 12 N 1.38823 * 120.62333 * 179.74672 * 11 9 8 13 13 S 1.65598 * 119.99867 * 68.46320 * 12 11 9 14 14 O 1.42097 * 106.40219 * 180.02562 * 13 12 11 15 15 O 1.42101 * 106.40411 * 312.95073 * 13 12 11 16 16 C 1.76198 * 107.21801 * 66.49134 * 13 12 11 17 17 H 1.08002 * 119.99913 * 359.97438 * 16 13 12 18 18 C 1.37877 * 120.00199 * 179.97438 * 16 13 12 19 19 N 1.31514 * 119.99643 * 0.02562 * 18 16 13 20 20 Si 1.86798 * 120.00177 * 179.97438 * 18 16 13 21 21 H 1.48499 * 109.47135 * 89.99971 * 20 18 16 22 22 H 1.48501 * 109.47002 * 209.99958 * 20 18 16 23 23 H 1.48494 * 109.47086 * 329.99850 * 20 18 16 24 24 H 1.08990 * 109.47570 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46808 * 300.00110 * 1 2 3 26 26 H 1.09006 * 109.47035 * 59.99117 * 1 2 3 27 27 H 1.08005 * 120.46256 * 0.02562 * 5 4 2 28 28 H 0.96999 * 119.99758 * 248.46939 * 12 11 9 29 29 H 0.97001 * 119.99765 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0502 0.0000 4 6 2.2420 -1.2733 -0.0006 5 6 1.5662 -2.4976 -0.1134 6 6 2.2951 -3.6685 -0.1102 7 17 1.4681 -5.1884 -0.2500 8 7 3.6115 -3.6537 -0.0017 9 6 4.2942 -2.5338 0.1077 10 17 6.0237 -2.5933 0.2458 11 6 3.6449 -1.3006 0.1128 12 7 4.3675 -0.1214 0.2335 13 16 5.3602 0.3710 -0.9971 14 8 5.9488 1.5930 -0.5733 15 8 6.1210 -0.7669 -1.3788 16 6 4.3308 0.7651 -2.3717 17 1 3.2590 0.6592 -2.2916 18 6 4.8935 1.2088 -3.5496 19 7 6.1987 1.3373 -3.6473 20 14 3.8022 1.6259 -5.0072 21 1 3.4155 3.0582 -4.9421 22 1 4.5422 1.3697 -6.2689 23 1 2.5814 0.7814 -4.9691 24 1 -0.3634 -1.0275 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5140 -0.8900 27 1 0.4901 -2.5229 -0.2025 28 1 4.2910 0.4140 1.0387 29 1 6.5946 1.6497 -4.4759 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192938544.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:05:09 Heat of formation + Delta-G solvation = -109.361499 kcal Electronic energy + Delta-G solvation = -23166.668101 eV Core-core repulsion = 19268.138764 eV Total energy + Delta-G solvation = -3898.529337 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 337.973 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.03272 -40.00728 -38.12342 -37.53627 -37.41229 -36.52805 -36.17248 -35.18812 -34.20051 -30.74574 -30.33391 -28.29220 -26.08545 -24.50398 -21.52291 -21.20978 -19.90026 -19.02922 -18.47764 -18.42647 -18.29395 -17.05088 -16.36850 -16.24108 -16.10808 -15.94801 -15.79316 -15.63914 -15.55666 -14.30488 -14.07599 -13.55505 -13.40679 -13.28144 -13.04753 -12.95981 -12.88727 -12.79400 -12.50860 -12.49177 -12.34209 -12.23420 -11.86922 -11.61359 -11.48482 -11.26695 -11.06363 -10.89033 -10.48898 -9.78656 -8.77734 -7.49615 -0.93201 -0.63062 0.22609 0.32825 0.86446 1.20104 1.29568 1.31311 1.46043 2.16011 2.17374 2.55698 2.61767 2.69146 3.29820 3.43154 3.50472 3.72148 3.86733 3.96414 4.25727 4.48219 4.62882 4.73255 4.76660 4.96776 5.24630 5.24930 5.84729 5.94577 6.13120 6.43391 6.75338 8.18668 Molecular weight = 337.97amu Principal moments of inertia in cm(-1) A = 0.011901 B = 0.005981 C = 0.005169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2352.242504 B = 4680.171219 C = 5415.862888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.387 3.613 3 O -0.459 6.459 4 C -0.114 4.114 5 C -0.075 4.075 6 C 0.167 3.833 7 Cl 0.009 6.991 8 N -0.463 5.463 9 C 0.166 3.834 10 Cl 0.006 6.994 11 C 0.160 3.840 12 N -1.051 6.051 13 S 2.703 3.297 14 O -1.036 7.036 15 O -0.999 6.999 16 C -1.026 5.026 17 H 0.112 0.888 18 C 0.074 3.926 19 N -0.890 5.890 20 Si 0.984 3.016 21 H -0.256 1.256 22 H -0.260 1.260 23 H -0.245 1.245 24 H 0.119 0.881 25 H 0.118 0.882 26 H 0.108 0.892 27 H 0.220 0.780 28 H 0.429 0.571 29 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.611 -9.181 6.992 21.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.264 3.736 3 O -0.333 6.333 4 C -0.126 4.126 5 C -0.095 4.095 6 C 0.002 3.998 7 Cl 0.038 6.962 8 N -0.178 5.178 9 C -0.002 4.002 10 Cl 0.034 6.966 11 C 0.058 3.942 12 N -0.802 5.802 13 S 2.805 3.195 14 O -1.026 7.026 15 O -0.989 6.989 16 C -1.160 5.160 17 H 0.130 0.870 18 C -0.140 4.140 19 N -0.522 5.522 20 Si 0.802 3.198 21 H -0.180 1.180 22 H -0.184 1.184 23 H -0.168 1.168 24 H 0.138 0.862 25 H 0.137 0.863 26 H 0.127 0.873 27 H 0.237 0.763 28 H 0.268 0.732 29 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -15.563 -9.490 6.862 19.477 hybrid contribution -0.281 1.037 -0.504 1.187 sum -15.843 -8.453 6.357 19.049 Atomic orbital electron populations 1.22315 0.87606 1.07686 1.06780 1.23115 0.94151 0.85242 0.71112 1.90679 1.73055 1.34535 1.34988 1.21724 0.91812 0.98250 1.00863 1.22640 1.04293 0.87140 0.95448 1.21693 0.87827 0.90051 1.00188 1.98428 1.73709 1.28387 1.95665 1.66085 1.09540 1.29879 1.12326 1.22099 0.89211 0.88328 1.00576 1.98467 1.04956 1.98160 1.94977 1.18270 0.91361 0.85487 0.99058 1.53082 1.62494 1.29862 1.34783 1.00786 0.73377 0.72154 0.73145 1.93324 1.77603 1.47958 1.83732 1.93484 1.70024 1.52266 1.83128 1.30687 1.08678 1.60510 1.16124 0.86996 1.25949 0.96587 0.89030 1.02397 1.69977 1.12414 1.38974 1.30795 0.85222 0.78950 0.80074 0.75573 1.17987 1.18429 1.16762 0.86237 0.86338 0.87338 0.76300 0.73214 0.89095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.16 10.20 71.24 0.73 -1.43 15 2 C 0.39 9.74 7.22 27.99 0.20 9.94 15 3 O -0.46 -16.24 15.22 -2.99 -0.05 -16.28 15 4 C -0.11 -3.10 5.92 -19.85 -0.12 -3.22 15 5 C -0.07 -1.42 9.25 22.70 0.21 -1.21 15 6 C 0.17 4.06 7.26 84.58 0.61 4.67 15 7 Cl 0.01 0.17 29.09 -2.72 -0.08 0.09 15 8 N -0.46 -15.17 10.27 -177.32 -1.82 -16.99 15 9 C 0.17 6.27 7.03 85.00 0.60 6.87 15 10 Cl 0.01 0.23 24.87 -2.72 -0.07 0.16 15 11 C 0.16 5.87 5.95 38.93 0.23 6.10 15 12 N -1.05 -44.23 3.57 -50.45 -0.18 -44.41 15 13 S 2.70 148.56 4.93 -56.49 -0.28 148.28 15 14 O -1.04 -64.10 18.02 -128.00 -2.31 -66.41 15 15 O -1.00 -57.58 13.59 -128.00 -1.74 -59.32 15 16 C -1.03 -57.45 9.70 67.73 0.66 -56.79 15 17 H 0.11 5.76 7.27 -2.91 -0.02 5.74 15 18 C 0.07 4.13 5.46 84.65 0.46 4.59 15 19 N -0.89 -53.39 13.19 21.45 0.28 -53.11 15 20 Si 0.98 41.47 29.54 68.60 2.03 43.50 15 21 H -0.26 -10.27 7.11 99.48 0.71 -9.56 15 22 H -0.26 -10.29 7.11 99.48 0.71 -9.58 15 23 H -0.24 -9.45 7.11 99.48 0.71 -8.74 15 24 H 0.12 0.43 5.73 -2.39 -0.01 0.42 15 25 H 0.12 0.98 8.14 -2.39 -0.02 0.97 15 26 H 0.11 1.20 8.14 -2.38 -0.02 1.18 15 27 H 0.22 1.52 6.10 -2.91 -0.02 1.51 15 28 H 0.43 16.01 8.66 -96.75 -0.84 15.17 15 29 H 0.30 16.11 8.31 -92.71 -0.77 15.34 15 Total: -1.00 -82.33 303.94 -0.20 -82.53 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: 0.42 Total: 12.44 kcal Atomic # 6 Polarization: -34.07 SS G_CDS: 3.58 Total: -30.48 kcal Atomic # 7 Polarization: -112.79 SS G_CDS: -1.72 Total: -114.51 kcal Atomic # 8 Polarization: -137.92 SS G_CDS: -4.09 Total: -142.01 kcal Atomic # 14 Polarization: 41.47 SS G_CDS: 2.03 Total: 43.50 kcal Atomic # 16 Polarization: 148.56 SS G_CDS: -0.28 Total: 148.28 kcal Atomic # 17 Polarization: 0.40 SS G_CDS: -0.15 Total: 0.26 kcal Total: -82.33 -0.20 -82.53 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192938544.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.833 kcal (2) G-P(sol) polarization free energy of solvation -82.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds