Wall clock time and date at job start Tue Mar 31 2020 21:34:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86802 * 119.99949 * 2 1 4 4 H 1.48503 * 109.47180 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46988 * 299.99317 * 3 2 1 6 6 H 1.48499 * 109.47274 * 60.00074 * 3 2 1 7 7 C 1.37872 * 120.00075 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00167 * 180.02562 * 7 2 1 9 9 S 1.76204 * 120.00025 * 0.02562 * 7 2 1 10 10 O 1.42095 * 106.40075 * 71.29971 * 9 7 2 11 11 O 1.42105 * 106.39981 * 298.37624 * 9 7 2 12 12 N 1.65601 * 107.22052 * 184.84052 * 9 7 2 13 13 C 1.39968 * 119.99765 * 297.37012 * 12 9 7 14 14 C 1.39386 * 120.42643 * 134.88709 * 13 12 9 15 15 C 1.38337 * 118.42404 * 180.02562 * 14 13 12 16 16 C 1.38906 * 119.18726 * 359.97438 * 15 14 13 17 17 O 1.35758 * 119.60640 * 179.97438 * 16 15 14 18 18 C 1.35948 * 118.00228 * 185.23190 * 17 16 15 19 19 C 1.38686 * 120.06245 * 260.73963 * 18 17 16 20 20 C 1.38173 * 119.96630 * 180.02562 * 19 18 17 21 21 C 1.38265 * 120.09547 * 0.02562 * 20 19 18 22 22 C 1.38254 * 120.13424 * 0.02562 * 21 20 19 23 23 C 1.38332 * 120.03091 * 359.97438 * 22 21 20 24 24 F 1.35103 * 120.04743 * 179.97438 * 23 22 21 25 25 N 1.32217 * 120.78819 * 0.25646 * 16 15 14 26 26 C 1.31955 * 121.71822 * 359.47357 * 25 16 15 27 27 H 0.97004 * 120.00123 * 0.02562 * 1 2 3 28 28 H 0.97004 * 120.00213 * 117.36026 * 12 9 7 29 29 H 1.08004 * 120.79245 * 359.97438 * 14 13 12 30 30 H 1.08002 * 120.40548 * 180.02562 * 15 14 13 31 31 H 1.08004 * 120.01871 * 0.04660 * 19 18 17 32 32 H 1.07999 * 119.94842 * 180.02562 * 20 19 18 33 33 H 1.08003 * 119.93217 * 180.27746 * 21 20 19 34 34 H 1.07999 * 119.98428 * 180.02562 * 22 21 20 35 35 H 1.08003 * 119.63351 * 180.27643 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 16 1.1235 -2.7200 0.0005 10 8 0.5449 -2.8492 -1.2908 11 8 0.3613 -2.7432 1.1997 12 7 2.2433 -3.9326 0.1347 13 6 3.2041 -4.1118 -0.8672 14 6 4.5404 -4.3261 -0.5336 15 6 5.4552 -4.4976 -1.5569 16 6 5.0152 -4.4516 -2.8737 17 8 5.9058 -4.6184 -3.8846 18 6 5.4613 -4.4599 -5.1596 19 6 5.1401 -5.5699 -5.9264 20 6 4.6889 -5.4065 -7.2221 21 6 4.5576 -4.1378 -7.7558 22 6 4.8776 -3.0284 -6.9953 23 6 5.3298 -3.1858 -5.6974 24 9 5.6431 -2.1019 -4.9542 25 7 3.7403 -4.2419 -3.1543 26 6 2.8386 -4.0791 -2.2047 27 1 -0.4850 0.8401 -0.0004 28 1 2.2335 -4.5185 0.9077 29 1 4.8543 -4.3566 0.4994 30 1 6.4987 -4.6661 -1.3348 31 1 5.2422 -6.5616 -5.5109 32 1 4.4385 -6.2711 -7.8189 33 1 4.2004 -4.0129 -8.7673 34 1 4.7737 -2.0385 -7.4144 35 1 1.8053 -3.9142 -2.4721 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192939715.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:34:54 Heat of formation + Delta-G solvation = -93.899676 kcal Electronic energy + Delta-G solvation = -26471.214963 eV Core-core repulsion = 22283.285669 eV Total energy + Delta-G solvation = -4187.929293 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 338.057 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -48.86753 -40.85525 -39.31103 -37.69976 -35.47492 -34.64460 -34.19584 -33.17244 -32.05244 -30.92208 -30.21057 -28.23313 -26.23250 -24.17842 -23.14413 -23.03399 -21.98558 -19.30795 -19.01308 -17.89500 -17.64647 -17.41763 -16.87827 -16.63593 -16.29538 -15.51112 -15.42563 -15.09298 -14.70773 -14.50343 -14.21717 -14.09357 -13.93965 -13.80645 -13.34768 -13.23522 -12.71826 -12.49228 -12.30477 -12.12858 -11.98307 -11.37315 -11.29287 -11.26505 -10.77406 -10.63328 -10.52255 -10.39377 -10.33351 -9.61154 -9.33502 -9.29879 -9.13858 -8.94940 -8.76656 -7.82285 -6.79356 -5.42688 0.82847 1.02765 1.32471 1.41673 2.08152 2.90651 3.02515 3.11056 3.19056 3.60379 3.93360 3.99176 4.08516 4.40658 4.55115 4.58387 4.60912 4.73815 5.03746 5.06665 5.10985 5.13497 5.19466 5.44943 5.59745 5.80410 5.87332 5.89834 5.90176 6.02461 6.16983 6.18898 6.29690 6.50842 6.70693 6.80048 7.23427 7.39196 7.62292 7.87568 8.08958 8.80182 10.14809 Molecular weight = 338.06amu Principal moments of inertia in cm(-1) A = 0.013626 B = 0.003892 C = 0.003517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2054.394230 B = 7193.170436 C = 7960.136163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.842 5.842 2 C 0.135 3.865 3 Si 0.921 3.079 4 H -0.261 1.261 5 H -0.269 1.269 6 H -0.269 1.269 7 C -1.014 5.014 8 H 0.104 0.896 9 S 2.702 3.298 10 O -0.997 6.997 11 O -0.990 6.990 12 N -1.067 6.067 13 C 0.101 3.899 14 C -0.069 4.069 15 C -0.163 4.163 16 C 0.280 3.720 17 O -0.247 6.247 18 C 0.069 3.931 19 C -0.089 4.089 20 C -0.121 4.121 21 C -0.090 4.090 22 C -0.145 4.145 23 C 0.103 3.897 24 F -0.128 7.128 25 N -0.505 5.505 26 C 0.116 3.884 27 H 0.292 0.708 28 H 0.414 0.586 29 H 0.147 0.853 30 H 0.143 0.857 31 H 0.137 0.863 32 H 0.135 0.865 33 H 0.135 0.865 34 H 0.140 0.860 35 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.684 -9.744 -10.309 18.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C -0.084 4.084 3 Si 0.745 3.255 4 H -0.185 1.185 5 H -0.194 1.194 6 H -0.194 1.194 7 C -1.148 5.148 8 H 0.122 0.878 9 S 2.803 3.197 10 O -0.987 6.987 11 O -0.981 6.981 12 N -0.812 5.812 13 C 0.002 3.998 14 C -0.098 4.098 15 C -0.184 4.184 16 C 0.102 3.898 17 O -0.154 6.154 18 C 0.026 3.974 19 C -0.108 4.108 20 C -0.139 4.139 21 C -0.109 4.109 22 C -0.164 4.164 23 C 0.083 3.917 24 F -0.107 7.107 25 N -0.226 5.226 26 C -0.044 4.044 27 H 0.103 0.897 28 H 0.248 0.752 29 H 0.165 0.835 30 H 0.161 0.839 31 H 0.155 0.845 32 H 0.153 0.847 33 H 0.153 0.847 34 H 0.158 0.842 35 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges 10.520 -9.679 -11.282 18.211 hybrid contribution 1.182 1.264 1.415 2.236 sum 11.702 -8.415 -9.867 17.467 Atomic orbital electron populations 1.69890 1.06729 1.30872 1.39686 1.24725 0.94503 1.00845 0.88307 0.86107 0.80555 0.80175 0.78690 1.18518 1.19421 1.19448 1.30402 1.06121 1.11048 1.67254 0.87792 1.01017 0.72055 0.73339 0.73259 1.93315 1.75842 1.87064 1.42492 1.93402 1.68743 1.87232 1.48692 1.54046 1.47815 1.50083 1.29292 1.18358 0.89404 1.02481 0.89601 1.21446 0.90916 0.97523 0.99919 1.20809 1.01435 1.07170 0.88959 1.19933 0.87155 0.96177 0.86499 1.84620 1.33922 1.85405 1.11409 1.18514 1.02885 0.91747 0.84284 1.21147 0.96916 0.98095 0.94624 1.21053 1.00166 0.97807 0.94883 1.21060 0.98089 0.91682 1.00019 1.21108 1.01844 1.01038 0.92414 1.18068 1.00398 0.82575 0.90685 1.91540 1.90084 1.52686 1.76353 1.67373 1.00899 1.16420 1.37886 1.23530 1.00255 0.93893 0.86688 0.89744 0.75248 0.83493 0.83929 0.84484 0.84742 0.84666 0.84183 0.78885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -24.25 13.10 55.43 0.73 -23.53 16 2 C 0.13 3.72 5.46 -17.82 -0.10 3.62 16 3 Si 0.92 20.66 29.54 -169.99 -5.02 15.64 16 4 H -0.26 -5.74 7.11 56.52 0.40 -5.34 16 5 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 6 H -0.27 -5.77 7.11 56.52 0.40 -5.36 16 7 C -1.01 -27.52 9.63 30.60 0.29 -27.23 16 8 H 0.10 2.65 7.81 -52.49 -0.41 2.24 16 9 S 2.70 68.82 4.95 -107.50 -0.53 68.29 16 10 O -1.00 -27.30 15.10 -57.17 -0.86 -28.16 16 11 O -0.99 -27.81 17.92 -57.17 -1.02 -28.84 16 12 N -1.07 -20.38 5.80 32.52 0.19 -20.19 16 13 C 0.10 1.86 6.20 -83.55 -0.52 1.34 16 14 C -0.07 -1.03 10.10 -39.12 -0.40 -1.42 16 15 C -0.16 -2.36 10.04 -39.30 -0.39 -2.76 16 16 C 0.28 4.73 7.44 -17.14 -0.13 4.61 16 17 O -0.25 -3.89 9.83 -3.33 -0.03 -3.93 16 18 C 0.07 1.01 4.98 -39.16 -0.20 0.82 16 19 C -0.09 -1.03 9.99 -39.44 -0.39 -1.42 16 20 C -0.12 -1.12 10.04 -39.60 -0.40 -1.52 16 21 C -0.09 -0.84 10.04 -39.57 -0.40 -1.24 16 22 C -0.15 -1.69 10.02 -39.54 -0.40 -2.09 16 23 C 0.10 1.53 7.27 -39.29 -0.29 1.25 16 24 F -0.13 -2.21 17.11 2.25 0.04 -2.17 16 25 N -0.50 -9.55 9.31 -13.16 -0.12 -9.68 16 26 C 0.12 2.30 10.39 -17.33 -0.18 2.12 16 27 H 0.29 7.54 8.31 -40.82 -0.34 7.20 16 28 H 0.41 6.40 8.96 -34.47 -0.31 6.09 16 29 H 0.15 1.71 8.06 -52.48 -0.42 1.29 16 30 H 0.14 1.61 8.06 -52.49 -0.42 1.19 16 31 H 0.14 1.33 8.06 -52.48 -0.42 0.91 16 32 H 0.13 0.84 8.06 -52.49 -0.42 0.41 16 33 H 0.14 0.84 8.06 -52.48 -0.42 0.42 16 34 H 0.14 1.36 8.06 -52.49 -0.42 0.94 16 35 H 0.19 4.17 5.64 -52.48 -0.30 3.87 16 LS Contribution 334.64 15.07 5.04 5.04 Total: -1.00 -35.27 334.64 -7.77 -43.04 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: -2.69 Total: 8.41 kcal Atomic # 6 Polarization: -20.44 SS G_CDS: -3.48 Total: -23.93 kcal Atomic # 7 Polarization: -54.19 SS G_CDS: 0.79 Total: -53.40 kcal Atomic # 8 Polarization: -59.01 SS G_CDS: -1.92 Total: -60.93 kcal Atomic # 9 Polarization: -2.21 SS G_CDS: 0.04 Total: -2.17 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Atomic # 16 Polarization: 68.82 SS G_CDS: -0.53 Total: 68.29 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -35.27 -7.77 -43.04 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192939715.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.862 kcal (2) G-P(sol) polarization free energy of solvation -35.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds