Wall clock time and date at job start Tue Mar 31 2020 21:34:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86802 * 119.99949 * 2 1 4 4 H 1.48503 * 109.47180 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46988 * 299.99317 * 3 2 1 6 6 H 1.48499 * 109.47274 * 60.00074 * 3 2 1 7 7 C 1.37872 * 120.00075 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00167 * 180.02562 * 7 2 1 9 9 S 1.76204 * 120.00025 * 0.02562 * 7 2 1 10 10 O 1.42095 * 106.40075 * 71.29971 * 9 7 2 11 11 O 1.42105 * 106.39981 * 298.37624 * 9 7 2 12 12 N 1.65601 * 107.22052 * 184.84052 * 9 7 2 13 13 C 1.39968 * 119.99765 * 297.37012 * 12 9 7 14 14 C 1.39386 * 120.42643 * 134.88709 * 13 12 9 15 15 C 1.38337 * 118.42404 * 180.02562 * 14 13 12 16 16 C 1.38906 * 119.18726 * 359.97438 * 15 14 13 17 17 O 1.35758 * 119.60640 * 179.97438 * 16 15 14 18 18 C 1.35948 * 118.00228 * 185.23190 * 17 16 15 19 19 C 1.38686 * 120.06245 * 260.73963 * 18 17 16 20 20 C 1.38173 * 119.96630 * 180.02562 * 19 18 17 21 21 C 1.38265 * 120.09547 * 0.02562 * 20 19 18 22 22 C 1.38254 * 120.13424 * 0.02562 * 21 20 19 23 23 C 1.38332 * 120.03091 * 359.97438 * 22 21 20 24 24 F 1.35103 * 120.04743 * 179.97438 * 23 22 21 25 25 N 1.32217 * 120.78819 * 0.25646 * 16 15 14 26 26 C 1.31955 * 121.71822 * 359.47357 * 25 16 15 27 27 H 0.97004 * 120.00123 * 0.02562 * 1 2 3 28 28 H 0.97004 * 120.00213 * 117.36026 * 12 9 7 29 29 H 1.08004 * 120.79245 * 359.97438 * 14 13 12 30 30 H 1.08002 * 120.40548 * 180.02562 * 15 14 13 31 31 H 1.08004 * 120.01871 * 0.04660 * 19 18 17 32 32 H 1.07999 * 119.94842 * 180.02562 * 20 19 18 33 33 H 1.08003 * 119.93217 * 180.27746 * 21 20 19 34 34 H 1.07999 * 119.98428 * 180.02562 * 22 21 20 35 35 H 1.08003 * 119.63351 * 180.27643 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 16 1.1235 -2.7200 0.0005 10 8 0.5449 -2.8492 -1.2908 11 8 0.3613 -2.7432 1.1997 12 7 2.2433 -3.9326 0.1347 13 6 3.2041 -4.1118 -0.8672 14 6 4.5404 -4.3261 -0.5336 15 6 5.4552 -4.4976 -1.5569 16 6 5.0152 -4.4516 -2.8737 17 8 5.9058 -4.6184 -3.8846 18 6 5.4613 -4.4599 -5.1596 19 6 5.1401 -5.5699 -5.9264 20 6 4.6889 -5.4065 -7.2221 21 6 4.5576 -4.1378 -7.7558 22 6 4.8776 -3.0284 -6.9953 23 6 5.3298 -3.1858 -5.6974 24 9 5.6431 -2.1019 -4.9542 25 7 3.7403 -4.2419 -3.1543 26 6 2.8386 -4.0791 -2.2047 27 1 -0.4850 0.8401 -0.0004 28 1 2.2335 -4.5185 0.9077 29 1 4.8543 -4.3566 0.4994 30 1 6.4987 -4.6661 -1.3348 31 1 5.2422 -6.5616 -5.5109 32 1 4.4385 -6.2711 -7.8189 33 1 4.2004 -4.0129 -8.7673 34 1 4.7737 -2.0385 -7.4144 35 1 1.8053 -3.9142 -2.4721 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192939715.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:34:53 Heat of formation + Delta-G solvation = -121.492866 kcal Electronic energy + Delta-G solvation = -26472.411493 eV Core-core repulsion = 22283.285669 eV Total energy + Delta-G solvation = -4189.125824 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 338.057 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -50.02924 -42.06834 -40.44683 -38.74323 -37.55144 -36.31538 -36.13643 -35.22689 -33.33264 -31.82122 -31.20395 -29.56173 -28.33186 -25.39501 -24.43351 -23.96293 -23.07571 -21.22322 -20.20080 -19.68809 -19.01403 -18.53891 -18.37064 -17.90467 -17.86371 -17.06777 -16.71589 -16.47086 -16.00201 -15.92581 -15.77981 -15.55825 -15.37731 -14.94421 -14.52051 -14.48123 -14.12249 -14.07741 -13.59941 -13.41002 -13.21052 -13.08177 -12.92301 -12.69513 -12.64371 -12.43430 -12.35914 -12.15248 -11.84051 -11.31561 -11.05810 -10.85548 -10.61627 -10.03010 -9.72844 -9.25123 -8.81485 -7.55659 -0.17227 -0.08392 0.10055 0.15032 0.31180 1.27921 1.30097 1.46694 1.87332 2.14380 2.50904 2.59323 2.66376 2.73613 3.11075 3.26160 3.52351 3.71315 3.74226 3.97740 4.00463 4.01000 4.21299 4.27678 4.30281 4.48150 4.61076 4.74274 4.89903 4.96691 5.03729 5.16740 5.20430 5.23216 5.34905 5.38707 5.73097 5.81285 6.10931 6.30577 6.71936 6.74754 8.14133 Molecular weight = 338.06amu Principal moments of inertia in cm(-1) A = 0.013626 B = 0.003892 C = 0.003517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2054.394230 B = 7193.170436 C = 7960.136163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.076 3.924 3 Si 0.984 3.016 4 H -0.253 1.253 5 H -0.261 1.261 6 H -0.252 1.252 7 C -1.036 5.036 8 H 0.115 0.885 9 S 2.714 3.286 10 O -1.028 7.028 11 O -1.024 7.024 12 N -1.049 6.049 13 C 0.080 3.920 14 C -0.051 4.051 15 C -0.150 4.150 16 C 0.271 3.729 17 O -0.248 6.248 18 C 0.036 3.964 19 C -0.096 4.096 20 C -0.109 4.109 21 C -0.080 4.080 22 C -0.152 4.152 23 C 0.062 3.938 24 F -0.153 7.153 25 N -0.523 5.523 26 C 0.089 3.911 27 H 0.301 0.699 28 H 0.431 0.569 29 H 0.189 0.811 30 H 0.184 0.816 31 H 0.152 0.848 32 H 0.174 0.826 33 H 0.175 0.825 34 H 0.154 0.846 35 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.971 -10.366 -11.218 20.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.138 4.138 3 Si 0.802 3.198 4 H -0.176 1.176 5 H -0.185 1.185 6 H -0.176 1.176 7 C -1.170 5.170 8 H 0.133 0.867 9 S 2.816 3.184 10 O -1.017 7.017 11 O -1.015 7.015 12 N -0.800 5.800 13 C -0.019 4.019 14 C -0.079 4.079 15 C -0.171 4.171 16 C 0.093 3.907 17 O -0.155 6.155 18 C -0.007 4.007 19 C -0.114 4.114 20 C -0.127 4.127 21 C -0.098 4.098 22 C -0.171 4.171 23 C 0.042 3.958 24 F -0.132 7.132 25 N -0.245 5.245 26 C -0.070 4.070 27 H 0.111 0.889 28 H 0.269 0.731 29 H 0.206 0.794 30 H 0.201 0.799 31 H 0.170 0.830 32 H 0.192 0.808 33 H 0.192 0.808 34 H 0.171 0.829 35 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 12.797 -10.325 -12.182 20.464 hybrid contribution 0.554 1.301 1.516 2.073 sum 13.351 -9.025 -10.667 19.325 Atomic orbital electron populations 1.69962 1.08464 1.32427 1.40931 1.25887 0.95381 1.04986 0.87514 0.85186 0.79386 0.75550 0.79659 1.17609 1.18509 1.17566 1.30777 1.06894 1.12221 1.67085 0.86717 1.00317 0.72333 0.73706 0.72050 1.93286 1.77184 1.87627 1.43619 1.93345 1.70408 1.88000 1.49716 1.53215 1.47413 1.49067 1.30352 1.18470 0.90625 1.04332 0.88519 1.21853 0.88953 0.95044 1.02085 1.21298 1.03250 1.04908 0.87630 1.20422 0.86737 0.95497 0.88027 1.84629 1.33682 1.85183 1.11970 1.18915 1.05054 0.92685 0.84053 1.21470 0.96567 0.97867 0.95478 1.21572 0.97831 0.99261 0.94057 1.21576 0.96094 0.90833 1.01285 1.21445 1.01294 1.02840 0.91490 1.18567 1.02884 0.82235 0.92099 1.91460 1.90693 1.53820 1.77188 1.67257 1.01910 1.17295 1.38029 1.23178 0.99603 0.96207 0.87964 0.88884 0.73119 0.79402 0.79900 0.82983 0.80827 0.80760 0.82852 0.81757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -52.21 13.10 21.44 0.28 -51.93 16 2 C 0.08 4.23 5.46 84.65 0.46 4.69 16 3 Si 0.98 41.87 29.54 68.60 2.03 43.89 16 4 H -0.25 -10.29 7.11 99.48 0.71 -9.58 16 5 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 6 H -0.25 -9.91 7.11 99.48 0.71 -9.20 16 7 C -1.04 -56.92 9.63 67.73 0.65 -56.26 16 8 H 0.11 5.83 7.81 -2.91 -0.02 5.81 16 9 S 2.71 142.24 4.95 -56.49 -0.28 141.96 16 10 O -1.03 -59.03 15.10 -128.00 -1.93 -60.96 16 11 O -1.02 -59.18 17.92 -128.00 -2.29 -61.48 16 12 N -1.05 -40.20 5.80 -51.03 -0.30 -40.49 16 13 C 0.08 2.90 6.20 38.23 0.24 3.13 16 14 C -0.05 -1.38 10.10 22.57 0.23 -1.16 16 15 C -0.15 -3.98 10.04 22.45 0.23 -3.76 16 16 C 0.27 9.02 7.44 84.79 0.63 9.65 16 17 O -0.25 -7.73 9.83 -34.83 -0.34 -8.07 16 18 C 0.04 1.05 4.98 22.54 0.11 1.16 16 19 C -0.10 -2.05 9.99 22.36 0.22 -1.83 16 20 C -0.11 -1.68 10.04 22.26 0.22 -1.46 16 21 C -0.08 -1.26 10.04 22.28 0.22 -1.03 16 22 C -0.15 -3.41 10.02 22.30 0.22 -3.18 16 23 C 0.06 1.87 7.27 22.46 0.16 2.04 16 24 F -0.15 -5.48 17.11 44.97 0.77 -4.71 16 25 N -0.52 -20.24 9.31 -308.39 -2.87 -23.11 16 26 C 0.09 3.67 10.39 84.78 0.88 4.55 16 27 H 0.30 15.85 8.31 -92.70 -0.77 15.08 16 28 H 0.43 13.08 8.96 -96.74 -0.87 12.21 16 29 H 0.19 3.54 8.06 -2.91 -0.02 3.51 16 30 H 0.18 3.35 8.06 -2.91 -0.02 3.33 16 31 H 0.15 2.68 8.06 -2.91 -0.02 2.65 16 32 H 0.17 1.31 8.06 -2.91 -0.02 1.29 16 33 H 0.18 1.35 8.06 -2.91 -0.02 1.33 16 34 H 0.15 2.86 8.06 -2.91 -0.02 2.83 16 35 H 0.17 7.64 5.64 -2.91 -0.02 7.63 16 Total: -1.00 -81.24 334.64 -0.15 -81.38 By element: Atomic # 1 Polarization: 26.66 SS G_CDS: 0.30 Total: 26.96 kcal Atomic # 6 Polarization: -47.94 SS G_CDS: 4.49 Total: -43.45 kcal Atomic # 7 Polarization: -112.64 SS G_CDS: -2.88 Total: -115.53 kcal Atomic # 8 Polarization: -125.94 SS G_CDS: -4.57 Total: -130.51 kcal Atomic # 9 Polarization: -5.48 SS G_CDS: 0.77 Total: -4.71 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 2.03 Total: 43.89 kcal Atomic # 16 Polarization: 142.24 SS G_CDS: -0.28 Total: 141.96 kcal Total: -81.24 -0.15 -81.38 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192939715.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.111 kcal (2) G-P(sol) polarization free energy of solvation -81.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds