Wall clock time and date at job start Tue Mar 31 2020 20:06:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.43205 * 120.00068 * 304.77612 * 3 2 1 5 5 N 3.51042 * 140.68731 * 304.78139 * 2 1 3 6 6 C 1.41152 * 119.99748 * 124.78293 * 3 2 1 7 7 C 1.38980 * 119.99976 * 6.61452 * 6 3 2 8 8 H 1.08005 * 120.00084 * 227.18252 * 7 6 3 9 9 C 1.40818 * 120.00013 * 47.18802 * 7 6 3 10 10 N 1.30342 * 120.00052 * 13.25232 * 9 7 6 11 11 Si 1.86800 * 120.00140 * 193.24798 * 9 7 6 12 12 H 1.48503 * 109.47002 * 0.02562 * 11 9 7 13 13 H 1.48503 * 109.47366 * 120.00038 * 11 9 7 14 14 H 1.48497 * 109.47514 * 239.99809 * 11 9 7 15 15 N 1.38224 * 119.99831 * 186.62361 * 6 3 2 16 16 S 1.65601 * 120.00236 * 185.70040 * 15 6 3 17 17 O 1.42098 * 106.40001 * 310.20738 * 16 15 6 18 18 O 1.42093 * 106.40361 * 177.27997 * 16 15 6 19 19 C 1.76205 * 107.21482 * 63.74288 * 16 15 6 20 20 C 1.38238 * 119.60194 * 150.00115 * 19 16 15 21 21 C 1.38603 * 119.17576 * 180.02562 * 20 19 16 22 22 C 1.38782 * 118.40867 * 0.25593 * 21 20 19 23 23 Cl 1.73601 * 120.42952 * 179.72346 * 22 21 20 24 24 C 1.38302 * 119.13605 * 359.50155 * 22 21 20 25 25 N 1.31855 * 119.60639 * 330.02686 * 19 16 15 26 26 H 0.96997 * 119.99609 * 184.98011 * 10 9 7 27 27 H 0.97005 * 120.00057 * 5.69203 * 15 6 3 28 28 H 1.07999 * 120.41089 * 0.04590 * 20 19 16 29 29 H 1.07998 * 120.79883 * 179.97438 * 21 20 19 30 30 H 1.08010 * 119.62492 * 180.23080 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2844 -0.7064 1.0187 5 7 3.8520 -1.2687 1.8267 6 6 3.2734 0.6983 -1.0040 7 6 2.5850 1.4962 -1.9102 8 1 2.7980 1.4211 -2.9663 9 6 1.6100 2.4026 -1.4512 10 7 1.5292 2.6852 -0.1814 11 14 0.4324 3.2001 -2.6623 12 1 0.7298 2.7155 -4.0341 13 1 -0.9637 2.8431 -2.3035 14 1 0.5944 4.6754 -2.6120 15 7 4.6488 0.5878 -1.0861 16 16 5.4906 1.5135 -2.1709 17 8 4.8389 1.3557 -3.4237 18 8 6.8658 1.2191 -1.9675 19 6 5.2679 3.1975 -1.7029 20 6 6.2636 4.1182 -1.9709 21 6 6.0793 5.4405 -1.5984 22 6 4.8962 5.7884 -0.9619 23 17 4.6136 7.4280 -0.4662 24 6 3.9432 4.8128 -0.7318 25 7 4.1537 3.5644 -1.1008 26 1 0.8131 3.2525 0.1446 27 1 5.1209 -0.0319 -0.5081 28 1 7.1736 3.8111 -2.4647 29 1 6.8401 6.1814 -1.7947 30 1 3.0180 5.0756 -0.2404 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001196257778.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:06:43 Heat of formation + Delta-G solvation = 25.168790 kcal Electronic energy + Delta-G solvation = -24487.358415 eV Core-core repulsion = 20629.388349 eV Total energy + Delta-G solvation = -3857.970065 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 338.003 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.18965 -37.65180 -36.90283 -36.86140 -35.72493 -34.94230 -34.70551 -33.36301 -32.59564 -31.39412 -29.63678 -26.97728 -24.22579 -23.87849 -22.00943 -19.94634 -18.94281 -18.09714 -17.75518 -16.93458 -16.80006 -16.55522 -16.07131 -15.26015 -15.00616 -14.74801 -14.27826 -13.61930 -13.40865 -13.08960 -13.04014 -12.52682 -12.42280 -12.31411 -12.15745 -12.01965 -11.96731 -11.68312 -11.64429 -11.54842 -11.47127 -11.24900 -11.09207 -10.94342 -10.85237 -10.60079 -10.14814 -10.01252 -9.68544 -9.33575 -9.17319 -7.26409 -7.13410 -5.25562 0.34647 0.54584 1.03953 1.73757 2.41880 2.89467 2.94729 3.02596 3.04883 3.41541 3.68765 3.71980 3.84522 4.12547 4.32940 4.43825 4.49360 4.52948 4.64514 4.85130 4.98146 5.30240 5.32070 5.45750 5.56220 5.69158 5.82731 6.22999 6.34510 6.71267 7.02107 7.48041 7.65711 7.81760 8.11993 8.22404 8.88382 9.31141 9.72589 Molecular weight = 338.00amu Principal moments of inertia in cm(-1) A = 0.010556 B = 0.006318 C = 0.005046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2651.781171 B = 4430.920259 C = 5547.393584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C 0.350 3.650 3 C -0.250 4.250 4 C 0.301 3.699 5 N -0.529 5.529 6 C 0.430 3.570 7 C -0.475 4.475 8 H 0.131 0.869 9 C 0.116 3.884 10 N -0.723 5.723 11 Si 0.894 3.106 12 H -0.249 1.249 13 H -0.261 1.261 14 H -0.269 1.269 15 N -1.038 6.038 16 S 2.712 3.288 17 O -0.928 6.928 18 O -0.961 6.961 19 C -0.428 4.428 20 C -0.080 4.080 21 C -0.088 4.088 22 C -0.048 4.048 23 Cl -0.053 7.053 24 C 0.103 3.897 25 N -0.313 5.313 26 H 0.293 0.707 27 H 0.415 0.585 28 H 0.154 0.846 29 H 0.151 0.849 30 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.992 10.892 -4.956 14.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.209 5.209 2 C 0.040 3.960 3 C -0.270 4.270 4 C -0.006 4.006 5 N -0.211 5.211 6 C 0.323 3.677 7 C -0.508 4.508 8 H 0.149 0.851 9 C -0.115 4.115 10 N -0.343 5.343 11 Si 0.717 3.283 12 H -0.172 1.172 13 H -0.186 1.186 14 H -0.193 1.193 15 N -0.782 5.782 16 S 2.799 3.201 17 O -0.918 6.918 18 O -0.950 6.950 19 C -0.648 4.648 20 C -0.102 4.102 21 C -0.115 4.115 22 C -0.077 4.077 23 Cl -0.024 7.024 24 C -0.058 4.058 25 N -0.022 5.022 26 H 0.105 0.895 27 H 0.250 0.750 28 H 0.172 0.828 29 H 0.169 0.831 30 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 6.936 9.540 -4.145 12.502 hybrid contribution 0.242 1.990 0.024 2.005 sum 7.177 11.530 -4.121 14.193 Atomic orbital electron populations 1.80977 1.12314 1.15965 1.11687 1.24227 0.90985 0.89583 0.91191 1.12690 0.83666 1.24714 1.05936 1.25487 0.92702 0.90982 0.91471 1.81106 1.10022 1.16835 1.13141 1.16731 0.78217 0.84169 0.88600 1.19880 1.17933 1.16253 0.96711 0.85128 1.25627 0.95330 0.94690 0.95812 1.69500 1.25585 1.24186 1.15049 0.86394 0.80722 0.79084 0.82126 1.17236 1.18565 1.19349 1.53912 1.16262 1.52823 1.55240 1.01763 0.71947 0.72843 0.73520 1.93632 1.74975 1.84001 1.39173 1.93614 1.31729 1.83421 1.86273 1.33686 0.97046 1.25046 1.09056 1.21831 0.98749 0.92800 0.96814 1.21492 0.96302 0.96856 0.96899 1.22552 0.97497 0.87698 0.99990 1.98392 1.96102 1.18300 1.89635 1.23301 0.98628 0.87488 0.96417 1.68725 1.15027 1.16487 1.01948 0.89527 0.74967 0.82825 0.83119 0.81112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.53 -12.85 18.54 41.84 0.78 -12.08 16 2 C 0.35 8.19 11.93 -22.47 -0.27 7.92 16 3 C -0.25 -5.44 5.36 -104.94 -0.56 -6.01 16 4 C 0.30 6.57 14.12 -22.46 -0.32 6.26 16 5 N -0.53 -11.89 18.54 41.85 0.78 -11.11 16 6 C 0.43 8.69 5.61 -83.60 -0.47 8.22 16 7 C -0.48 -9.80 5.43 -38.33 -0.21 -10.00 16 8 H 0.13 2.71 5.92 -52.48 -0.31 2.40 16 9 C 0.12 2.35 3.03 -17.21 -0.05 2.30 16 10 N -0.72 -14.77 10.85 55.59 0.60 -14.16 16 11 Si 0.89 16.65 29.59 -169.99 -5.03 11.62 16 12 H -0.25 -4.68 7.11 56.52 0.40 -4.28 16 13 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 14 H -0.27 -4.71 7.11 56.52 0.40 -4.31 16 15 N -1.04 -18.18 5.72 32.59 0.19 -18.00 16 16 S 2.71 44.28 5.33 -107.50 -0.57 43.71 16 17 O -0.93 -16.94 15.38 -57.17 -0.88 -17.82 16 18 O -0.96 -15.88 17.65 -57.17 -1.01 -16.89 16 19 C -0.43 -6.62 6.68 -17.54 -0.12 -6.73 16 20 C -0.08 -0.99 9.57 -39.45 -0.38 -1.37 16 21 C -0.09 -0.96 9.98 -39.25 -0.39 -1.36 16 22 C -0.05 -0.59 6.34 -39.36 -0.25 -0.84 16 23 Cl -0.05 -0.57 28.99 -51.86 -1.50 -2.07 16 24 C 0.10 1.52 10.99 -17.51 -0.19 1.33 16 25 N -0.31 -5.26 6.00 -12.42 -0.07 -5.33 16 26 H 0.29 5.64 8.29 -40.82 -0.34 5.30 16 27 H 0.41 6.70 7.72 -34.47 -0.27 6.43 16 28 H 0.15 1.45 7.94 -52.49 -0.42 1.03 16 29 H 0.15 1.14 8.06 -52.49 -0.42 0.72 16 30 H 0.17 2.42 8.06 -52.48 -0.42 2.00 16 LS Contribution 312.93 15.07 4.72 4.72 Total: -1.00 -26.94 312.93 -6.19 -33.13 By element: Atomic # 1 Polarization: 5.54 SS G_CDS: -0.97 Total: 4.57 kcal Atomic # 6 Polarization: 2.93 SS G_CDS: -3.21 Total: -0.28 kcal Atomic # 7 Polarization: -62.95 SS G_CDS: 2.27 Total: -60.68 kcal Atomic # 8 Polarization: -32.82 SS G_CDS: -1.89 Total: -34.71 kcal Atomic # 14 Polarization: 16.65 SS G_CDS: -5.03 Total: 11.62 kcal Atomic # 16 Polarization: 44.28 SS G_CDS: -0.57 Total: 43.71 kcal Atomic # 17 Polarization: -0.57 SS G_CDS: -1.50 Total: -2.07 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -26.94 -6.19 -33.13 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001196257778.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.302 kcal (2) G-P(sol) polarization free energy of solvation -26.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.134 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds