Wall clock time and date at job start Tue Mar 31 2020 20:06:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.43205 * 120.00068 * 304.77612 * 3 2 1 5 5 N 3.51042 * 140.68731 * 304.78139 * 2 1 3 6 6 C 1.41152 * 119.99748 * 124.78293 * 3 2 1 7 7 C 1.38980 * 119.99976 * 6.61452 * 6 3 2 8 8 H 1.08005 * 120.00084 * 227.18252 * 7 6 3 9 9 C 1.40818 * 120.00013 * 47.18802 * 7 6 3 10 10 N 1.30342 * 120.00052 * 13.25232 * 9 7 6 11 11 Si 1.86800 * 120.00140 * 193.24798 * 9 7 6 12 12 H 1.48503 * 109.47002 * 0.02562 * 11 9 7 13 13 H 1.48503 * 109.47366 * 120.00038 * 11 9 7 14 14 H 1.48497 * 109.47514 * 239.99809 * 11 9 7 15 15 N 1.38224 * 119.99831 * 186.62361 * 6 3 2 16 16 S 1.65601 * 120.00236 * 185.70040 * 15 6 3 17 17 O 1.42098 * 106.40001 * 310.20738 * 16 15 6 18 18 O 1.42093 * 106.40361 * 177.27997 * 16 15 6 19 19 C 1.76205 * 107.21482 * 63.74288 * 16 15 6 20 20 C 1.38238 * 119.60194 * 150.00115 * 19 16 15 21 21 C 1.38603 * 119.17576 * 180.02562 * 20 19 16 22 22 C 1.38782 * 118.40867 * 0.25593 * 21 20 19 23 23 Cl 1.73601 * 120.42952 * 179.72346 * 22 21 20 24 24 C 1.38302 * 119.13605 * 359.50155 * 22 21 20 25 25 N 1.31855 * 119.60639 * 330.02686 * 19 16 15 26 26 H 0.96997 * 119.99609 * 184.98011 * 10 9 7 27 27 H 0.97005 * 120.00057 * 5.69203 * 15 6 3 28 28 H 1.07999 * 120.41089 * 0.04590 * 20 19 16 29 29 H 1.07998 * 120.79883 * 179.97438 * 21 20 19 30 30 H 1.08010 * 119.62492 * 180.23080 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2844 -0.7064 1.0187 5 7 3.8520 -1.2687 1.8267 6 6 3.2734 0.6983 -1.0040 7 6 2.5850 1.4962 -1.9102 8 1 2.7980 1.4211 -2.9663 9 6 1.6100 2.4026 -1.4512 10 7 1.5292 2.6852 -0.1814 11 14 0.4324 3.2001 -2.6623 12 1 0.7298 2.7155 -4.0341 13 1 -0.9637 2.8431 -2.3035 14 1 0.5944 4.6754 -2.6120 15 7 4.6488 0.5878 -1.0861 16 16 5.4906 1.5135 -2.1709 17 8 4.8389 1.3557 -3.4237 18 8 6.8658 1.2191 -1.9675 19 6 5.2679 3.1975 -1.7029 20 6 6.2636 4.1182 -1.9709 21 6 6.0793 5.4405 -1.5984 22 6 4.8962 5.7884 -0.9619 23 17 4.6136 7.4280 -0.4662 24 6 3.9432 4.8128 -0.7318 25 7 4.1537 3.5644 -1.1008 26 1 0.8131 3.2525 0.1446 27 1 5.1209 -0.0319 -0.5081 28 1 7.1736 3.8111 -2.4647 29 1 6.8401 6.1814 -1.7947 30 1 3.0180 5.0756 -0.2404 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001196257778.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:06:42 Heat of formation + Delta-G solvation = 7.863930 kcal Electronic energy + Delta-G solvation = -24488.108810 eV Core-core repulsion = 20629.388349 eV Total energy + Delta-G solvation = -3858.720460 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 338.003 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.22148 -39.19359 -38.27513 -37.80406 -37.08319 -36.64846 -36.48050 -34.95639 -33.60541 -32.43146 -31.25057 -28.62368 -25.27560 -24.90671 -23.58443 -21.38896 -20.31664 -19.65536 -19.02346 -18.38868 -17.94502 -17.66021 -17.44714 -16.78292 -16.32994 -15.84805 -15.36438 -14.98207 -14.80424 -14.48150 -14.28908 -14.06380 -13.98335 -13.74626 -13.50667 -13.38863 -13.32473 -13.24868 -13.20687 -13.07772 -12.81788 -12.66670 -12.63318 -12.56462 -12.20637 -12.07791 -11.75905 -11.10973 -10.95519 -10.41377 -10.34424 -8.85318 -8.77495 -6.91175 -0.82145 -0.60797 0.08357 0.80254 0.82319 1.42886 1.44639 1.54528 1.65557 2.06459 2.18734 2.32964 2.35682 2.45074 2.61326 2.87071 3.30006 3.53585 3.59902 3.63778 3.80760 3.86087 3.87941 4.33229 4.41449 4.51202 4.64967 4.79598 5.11461 5.24731 5.42653 5.90290 6.22248 6.49498 6.59344 6.61704 7.15269 7.49797 8.15275 Molecular weight = 338.00amu Principal moments of inertia in cm(-1) A = 0.010556 B = 0.006318 C = 0.005046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2651.781171 B = 4430.920259 C = 5547.393584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C 0.354 3.646 3 C -0.271 4.271 4 C 0.309 3.691 5 N -0.544 5.544 6 C 0.439 3.561 7 C -0.477 4.477 8 H 0.130 0.870 9 C 0.101 3.899 10 N -0.729 5.729 11 Si 0.925 3.075 12 H -0.252 1.252 13 H -0.278 1.278 14 H -0.249 1.249 15 N -1.037 6.037 16 S 2.727 3.273 17 O -0.950 6.950 18 O -0.962 6.962 19 C -0.450 4.450 20 C -0.074 4.074 21 C -0.076 4.076 22 C -0.044 4.044 23 Cl -0.035 7.035 24 C 0.085 3.915 25 N -0.347 5.347 26 H 0.297 0.703 27 H 0.421 0.579 28 H 0.184 0.816 29 H 0.192 0.808 30 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.495 12.925 -5.633 16.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.237 5.237 2 C 0.045 3.955 3 C -0.291 4.291 4 C 0.003 3.997 5 N -0.228 5.228 6 C 0.331 3.669 7 C -0.509 4.509 8 H 0.147 0.853 9 C -0.130 4.130 10 N -0.348 5.348 11 Si 0.746 3.254 12 H -0.175 1.175 13 H -0.203 1.203 14 H -0.173 1.173 15 N -0.780 5.780 16 S 2.817 3.183 17 O -0.940 6.940 18 O -0.952 6.952 19 C -0.671 4.671 20 C -0.096 4.096 21 C -0.103 4.103 22 C -0.073 4.073 23 Cl -0.006 7.006 24 C -0.077 4.077 25 N -0.056 5.056 26 H 0.109 0.891 27 H 0.257 0.743 28 H 0.201 0.799 29 H 0.209 0.791 30 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 8.460 11.540 -4.821 15.099 hybrid contribution -0.154 1.528 0.214 1.551 sum 8.306 13.068 -4.607 16.155 Atomic orbital electron populations 1.80959 1.12944 1.17177 1.12653 1.24503 0.91347 0.89032 0.90617 1.12734 0.83118 1.26164 1.07072 1.25455 0.92423 0.90655 0.91208 1.81100 1.10462 1.17600 1.13593 1.16636 0.79138 0.83392 0.87762 1.19979 1.18158 1.16101 0.96672 0.85298 1.25939 0.95701 0.94858 0.96474 1.69500 1.25696 1.24051 1.15602 0.85948 0.78659 0.79851 0.80926 1.17476 1.20299 1.17294 1.53805 1.15426 1.53422 1.55396 1.01177 0.71416 0.73040 0.72704 1.93599 1.75370 1.84752 1.40286 1.93607 1.31569 1.83872 1.86189 1.33285 0.98271 1.24557 1.11035 1.22227 0.98752 0.92842 0.95777 1.21941 0.96335 0.97014 0.95012 1.22589 0.97392 0.88098 0.99241 1.98403 1.96087 1.16747 1.89405 1.23287 0.99434 0.87643 0.97321 1.68550 1.16054 1.17816 1.03161 0.89085 0.74340 0.79880 0.79095 0.81476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.55 -27.24 18.54 19.00 0.35 -26.89 16 2 C 0.35 16.68 11.93 88.33 1.05 17.73 16 3 C -0.27 -11.84 5.36 -20.07 -0.11 -11.95 16 4 C 0.31 13.54 14.12 88.33 1.25 14.78 16 5 N -0.54 -24.43 18.54 19.01 0.35 -24.08 16 6 C 0.44 17.72 5.61 39.03 0.22 17.94 16 7 C -0.48 -19.55 5.43 23.08 0.13 -19.42 16 8 H 0.13 5.32 5.92 -2.91 -0.02 5.30 16 9 C 0.10 4.03 3.03 85.54 0.26 4.29 16 10 N -0.73 -29.59 10.85 21.98 0.24 -29.35 16 11 Si 0.92 33.36 29.59 68.60 2.03 35.39 16 12 H -0.25 -9.13 7.11 99.48 0.71 -8.42 16 13 H -0.28 -10.75 7.11 99.48 0.71 -10.04 16 14 H -0.25 -8.15 7.11 99.48 0.71 -7.45 16 15 N -1.04 -36.01 5.72 -50.81 -0.29 -36.30 16 16 S 2.73 86.30 5.33 -56.49 -0.30 86.00 16 17 O -0.95 -34.06 15.38 -128.00 -1.97 -36.03 16 18 O -0.96 -30.32 17.65 -128.00 -2.26 -32.58 16 19 C -0.45 -13.15 6.68 84.69 0.57 -12.59 16 20 C -0.07 -1.59 9.57 22.36 0.21 -1.38 16 21 C -0.08 -1.37 9.98 22.49 0.22 -1.14 16 22 C -0.04 -0.96 6.34 22.42 0.14 -0.82 16 23 Cl -0.04 -0.66 28.99 -2.72 -0.08 -0.74 16 24 C 0.09 2.40 10.99 84.70 0.93 3.33 16 25 N -0.35 -11.26 6.00 -193.21 -1.16 -12.42 16 26 H 0.30 11.39 8.29 -92.71 -0.77 10.62 16 27 H 0.42 13.50 7.72 -96.74 -0.75 12.75 16 28 H 0.18 2.73 7.94 -2.91 -0.02 2.71 16 29 H 0.19 1.86 8.06 -2.91 -0.02 1.83 16 30 H 0.17 4.63 8.06 -2.91 -0.02 4.60 16 Total: -1.00 -56.62 312.93 2.31 -54.31 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: 0.52 Total: 11.91 kcal Atomic # 6 Polarization: 5.90 SS G_CDS: 4.87 Total: 10.78 kcal Atomic # 7 Polarization: -128.54 SS G_CDS: -0.51 Total: -129.04 kcal Atomic # 8 Polarization: -64.38 SS G_CDS: -4.23 Total: -68.60 kcal Atomic # 14 Polarization: 33.36 SS G_CDS: 2.03 Total: 35.39 kcal Atomic # 16 Polarization: 86.30 SS G_CDS: -0.30 Total: 86.00 kcal Atomic # 17 Polarization: -0.66 SS G_CDS: -0.08 Total: -0.74 kcal Total: -56.62 2.31 -54.31 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001196257778.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.172 kcal (2) G-P(sol) polarization free energy of solvation -56.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.308 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds