Wall clock time and date at job start Tue Mar 31 2020 20:52:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46645 * 2 1 4 4 C 1.53005 * 109.46881 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.46885 * 179.97438 * 4 3 2 6 6 C 1.36941 * 120.00458 * 274.72478 * 5 4 3 7 7 H 1.07993 * 120.00074 * 141.74564 * 6 5 4 8 8 C 1.38812 * 119.99677 * 321.75114 * 6 5 4 9 9 N 1.31617 * 120.00213 * 338.90137 * 8 6 5 10 10 Si 1.86804 * 119.99614 * 158.90359 * 8 6 5 11 11 H 1.48497 * 109.47220 * 90.00261 * 10 8 6 12 12 H 1.48500 * 109.46996 * 209.99730 * 10 8 6 13 13 H 1.48495 * 109.47094 * 329.99799 * 10 8 6 14 14 S 1.65598 * 119.99927 * 95.00716 * 5 4 3 15 15 O 1.42102 * 106.40200 * 28.73062 * 14 5 4 16 16 O 1.42097 * 106.40624 * 161.65334 * 14 5 4 17 17 C 1.76208 * 107.21706 * 275.19435 * 14 5 4 18 18 S 1.76192 * 126.01767 * 269.68954 * 17 14 5 19 19 C 1.70979 * 90.29745 * 179.97438 * 18 17 14 20 20 Cl 1.73595 * 124.92437 * 180.02562 * 19 18 17 21 21 N 1.29143 * 110.15338 * 0.34740 * 19 18 17 22 22 C 1.31867 * 117.07037 * 359.72026 * 21 19 18 23 23 C 1.50704 * 122.73925 * 180.02562 * 22 21 19 24 24 H 1.09002 * 109.46589 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47303 * 299.99535 * 1 2 3 26 26 H 1.08997 * 109.47474 * 60.00531 * 1 2 3 27 27 H 1.09000 * 109.47303 * 240.00465 * 2 1 3 28 28 H 1.08993 * 109.47315 * 119.99957 * 2 1 3 29 29 H 1.09000 * 109.47407 * 60.00778 * 3 2 1 30 30 H 1.09002 * 109.47526 * 299.99514 * 3 2 1 31 31 H 1.09000 * 109.46971 * 60.00524 * 4 3 2 32 32 H 1.08993 * 109.47411 * 300.00160 * 4 3 2 33 33 H 0.96998 * 120.00072 * 179.97438 * 9 8 6 34 34 H 1.08999 * 109.47145 * 269.96901 * 23 22 21 35 35 H 1.08999 * 109.46802 * 29.96750 * 23 22 21 36 36 H 1.08994 * 109.47283 * 149.96333 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 0.0006 5 7 4.0581 2.8238 0.0000 6 6 4.1948 3.5013 -1.1822 7 1 3.9448 4.5506 -1.2352 8 6 4.6544 2.8393 -2.3124 9 7 5.3390 1.7221 -2.1878 10 14 4.3013 3.5341 -4.0100 11 1 5.3980 4.4534 -4.4066 12 1 4.2086 2.4225 -4.9903 13 1 3.0167 4.2786 -3.9828 14 16 4.4515 3.5636 1.4284 15 8 4.8662 2.5322 2.3136 16 8 5.2703 4.6753 1.0925 17 6 2.9632 4.2266 2.0995 18 16 2.3224 5.8410 1.8040 19 6 0.9855 5.5052 2.8155 20 17 -0.3038 6.6155 3.1599 21 7 1.0773 4.3083 3.2917 22 6 2.1257 3.5963 2.9273 23 6 2.3596 2.1864 3.4055 24 1 -0.3632 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5137 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 1.6766 1.9563 0.8900 30 1 1.6766 1.9564 -0.8900 31 1 3.9336 0.9287 -0.8892 32 1 3.9329 0.9289 0.8908 33 1 5.6599 1.2593 -2.9776 34 1 2.9416 2.2071 4.3269 35 1 1.4010 1.7024 3.5921 36 1 2.9053 1.6301 2.6435 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001201748696.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:52:52 Heat of formation + Delta-G solvation = -57.615228 kcal Electronic energy + Delta-G solvation = -23973.854939 eV Core-core repulsion = 20351.279384 eV Total energy + Delta-G solvation = -3622.575555 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 338.031 amu Computer time = 6.27 seconds Orbital eigenvalues (eV) -41.22886 -38.35852 -38.18779 -37.94320 -36.66374 -35.32918 -33.25479 -33.11256 -29.67211 -29.11507 -26.47329 -26.06240 -23.90060 -22.18885 -21.74852 -20.31634 -19.67362 -19.08321 -18.17753 -18.00653 -16.89184 -16.59394 -16.31554 -16.14835 -15.96717 -15.17743 -14.99769 -14.75717 -14.21315 -14.02726 -13.87347 -13.58640 -13.17196 -13.17060 -13.09127 -12.99875 -12.89240 -12.85499 -12.83183 -12.66968 -12.57954 -12.22117 -12.13472 -11.87841 -11.79339 -11.63287 -11.31712 -11.11817 -11.02224 -10.86226 -10.10388 -9.60175 -8.21277 -5.98730 -1.15201 -0.65478 -0.36706 0.18276 0.53289 1.16404 1.49758 1.52403 1.62929 2.31981 2.60716 2.86798 3.08734 3.10550 3.51610 4.00527 4.17262 4.23258 4.32889 4.39842 4.53555 4.59687 4.66426 4.89556 4.94170 5.01399 5.08868 5.13126 5.28316 5.37190 5.47929 5.54222 5.70207 5.93740 6.02542 6.48720 7.04096 7.42597 8.80968 Molecular weight = 338.03amu Principal moments of inertia in cm(-1) A = 0.011339 B = 0.005448 C = 0.004970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2468.835201 B = 5138.633912 C = 5632.432845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.120 4.120 3 C -0.129 4.129 4 C 0.119 3.881 5 N -0.844 5.844 6 C -0.304 4.304 7 H 0.088 0.912 8 C 0.005 3.995 9 N -0.882 5.882 10 Si 0.971 3.029 11 H -0.278 1.278 12 H -0.276 1.276 13 H -0.257 1.257 14 S 2.658 3.342 15 O -0.995 6.995 16 O -0.999 6.999 17 C -0.835 4.835 18 S 0.324 5.676 19 C 0.089 3.911 20 Cl 0.061 6.939 21 N -0.486 5.486 22 C 0.213 3.787 23 C -0.108 4.108 24 H 0.067 0.933 25 H 0.053 0.947 26 H 0.048 0.952 27 H 0.058 0.942 28 H 0.070 0.930 29 H 0.053 0.947 30 H 0.055 0.945 31 H 0.093 0.907 32 H 0.061 0.939 33 H 0.272 0.728 34 H 0.103 0.897 35 H 0.109 0.891 36 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.939 2.589 5.980 13.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.158 4.158 3 C -0.168 4.168 4 C -0.008 4.008 5 N -0.676 5.676 6 C -0.441 4.441 7 H 0.106 0.894 8 C -0.201 4.201 9 N -0.521 5.521 10 Si 0.794 3.206 11 H -0.204 1.204 12 H -0.201 1.201 13 H -0.181 1.181 14 S 2.753 3.247 15 O -0.984 6.984 16 O -0.989 6.989 17 C -1.039 5.039 18 S 0.577 5.423 19 C -0.213 4.213 20 Cl 0.089 6.911 21 N -0.205 5.205 22 C 0.075 3.925 23 C -0.167 4.167 24 H 0.086 0.914 25 H 0.073 0.927 26 H 0.067 0.933 27 H 0.077 0.923 28 H 0.088 0.912 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.110 0.890 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.121 0.879 35 H 0.127 0.873 36 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -11.310 3.440 6.233 13.364 hybrid contribution -0.408 -0.173 -0.370 0.578 sum -11.717 3.267 5.862 13.503 Atomic orbital electron populations 1.21720 0.94782 1.02101 1.01584 1.21453 0.96571 0.95470 1.02294 1.22018 0.95672 0.97709 1.01429 1.21442 0.93112 0.82641 1.03569 1.52604 1.76998 1.21314 1.16679 1.19286 1.42538 0.96402 0.85864 0.89398 1.26158 0.93806 0.97035 1.03078 1.70068 1.31938 1.18707 1.31415 0.85283 0.79325 0.78185 0.77781 1.20350 1.20144 1.18121 1.04029 0.72866 0.73492 0.74291 1.93406 1.80106 1.56644 1.68259 1.93401 1.65447 1.55964 1.84090 1.37309 1.32179 1.10569 1.23851 1.83885 1.10533 1.07541 1.40303 1.27899 0.98159 0.94789 1.00426 1.98444 1.44553 1.54533 1.93554 1.66079 1.23569 1.04600 1.26240 1.20018 0.85433 0.97736 0.89324 1.21042 1.04898 0.86913 1.03834 0.91407 0.92749 0.93264 0.92319 0.91173 0.92847 0.92635 0.88954 0.92090 0.91861 0.87862 0.87288 0.89297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.35 9.91 71.98 0.71 -2.64 16 2 C -0.12 -3.35 5.93 30.59 0.18 -3.17 16 3 C -0.13 -4.47 5.30 30.60 0.16 -4.31 16 4 C 0.12 5.04 4.88 86.38 0.42 5.46 16 5 N -0.84 -39.78 2.81 -343.46 -0.97 -40.74 16 6 C -0.30 -15.27 8.80 84.03 0.74 -14.53 16 7 H 0.09 4.32 7.91 -2.91 -0.02 4.30 16 8 C 0.01 0.26 5.00 84.86 0.42 0.68 16 9 N -0.88 -45.84 11.44 21.65 0.25 -45.59 16 10 Si 0.97 39.21 29.60 68.60 2.03 41.24 16 11 H -0.28 -11.27 7.11 99.48 0.71 -10.56 16 12 H -0.28 -10.84 7.11 99.48 0.71 -10.13 16 13 H -0.26 -9.85 7.11 99.48 0.71 -9.14 16 14 S 2.66 121.33 5.52 -56.49 -0.31 121.02 16 15 O -0.99 -46.18 14.06 -128.00 -1.80 -47.98 16 16 O -1.00 -51.46 17.09 -128.00 -2.19 -53.65 16 17 C -0.84 -31.26 6.59 66.76 0.44 -30.82 16 18 S 0.32 10.19 23.15 -56.49 -1.31 8.89 16 19 C 0.09 2.54 8.03 130.64 1.05 3.59 16 20 Cl 0.06 1.33 29.33 -2.72 -0.08 1.25 16 21 N -0.49 -15.23 10.54 -182.36 -1.92 -17.15 16 22 C 0.21 7.14 5.92 41.49 0.25 7.38 16 23 C -0.11 -3.17 8.46 71.24 0.60 -2.57 16 24 H 0.07 1.31 8.14 -2.39 -0.02 1.30 16 25 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 26 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 28 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 29 H 0.05 1.76 5.83 -2.39 -0.01 1.75 16 30 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 31 H 0.09 4.35 5.53 -2.39 -0.01 4.33 16 32 H 0.06 2.51 6.22 -2.39 -0.01 2.50 16 33 H 0.27 13.25 8.31 -92.71 -0.77 12.48 16 34 H 0.10 2.81 8.14 -2.39 -0.02 2.79 16 35 H 0.11 2.56 8.14 -2.39 -0.02 2.55 16 36 H 0.09 2.86 4.35 -2.39 -0.01 2.85 16 Total: -1.00 -60.64 336.99 -0.20 -60.84 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: 1.12 Total: 12.81 kcal Atomic # 6 Polarization: -45.91 SS G_CDS: 4.98 Total: -40.93 kcal Atomic # 7 Polarization: -100.85 SS G_CDS: -2.64 Total: -103.49 kcal Atomic # 8 Polarization: -97.65 SS G_CDS: -3.99 Total: -101.63 kcal Atomic # 14 Polarization: 39.21 SS G_CDS: 2.03 Total: 41.24 kcal Atomic # 16 Polarization: 131.53 SS G_CDS: -1.62 Total: 129.91 kcal Atomic # 17 Polarization: 1.33 SS G_CDS: -0.08 Total: 1.25 kcal Total: -60.64 -0.20 -60.84 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201748696.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.226 kcal (2) G-P(sol) polarization free energy of solvation -60.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.27 seconds