Wall clock time and date at job start Tue Mar 31 2020 20:28:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 119.99910 * 2 1 4 4 H 1.48504 * 109.46787 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47372 * 299.99782 * 3 2 1 6 6 H 1.48500 * 109.47436 * 60.00171 * 3 2 1 7 7 C 1.37879 * 120.00136 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00391 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99410 * 359.97438 * 7 2 1 10 10 N 1.46905 * 109.46807 * 180.02562 * 9 7 2 11 11 C 1.46900 * 110.99993 * 180.02562 * 10 9 7 12 12 C 1.50697 * 109.46959 * 179.97438 * 11 10 9 13 13 N 1.30979 * 126.44419 * 90.28077 * 12 11 10 14 14 C 1.35204 * 105.57958 * 180.09911 * 13 12 11 15 15 C 1.48466 * 126.40626 * 179.90307 * 14 13 12 16 16 C 1.39729 * 120.90471 * 179.71595 * 15 14 13 17 17 C 1.38019 * 119.03578 * 180.25554 * 16 15 14 18 18 N 1.31905 * 120.90084 * 359.44096 * 17 16 15 19 19 C 1.31850 * 122.01295 * 0.54821 * 18 17 16 20 20 C 1.38175 * 120.86114 * 359.74908 * 19 18 17 21 21 Br 1.89102 * 120.49814 * 179.97438 * 20 19 18 22 22 N 1.30724 * 107.18140 * 359.64044 * 14 13 12 23 23 O 1.21294 * 110.10584 * 0.22309 * 22 14 13 24 24 H 0.96998 * 119.99312 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.47384 * 60.00517 * 9 7 2 26 26 H 1.09000 * 109.47411 * 299.99789 * 9 7 2 27 27 H 1.00901 * 111.00037 * 303.95605 * 10 9 7 28 28 H 1.09001 * 109.47218 * 60.00011 * 11 10 9 29 29 H 1.08996 * 109.47343 * 299.99998 * 11 10 9 30 30 H 1.08002 * 120.47832 * 359.97135 * 16 15 14 31 31 H 1.07995 * 119.54370 * 179.70004 * 17 16 15 32 32 H 1.08000 * 119.56816 * 179.71905 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3965 -1.2125 6 1 1.8905 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0017 10 7 2.2056 -3.6157 0.0027 11 6 1.5053 -4.9070 0.0032 12 6 2.5148 -6.0259 0.0036 13 7 3.0322 -6.6066 1.0575 14 6 3.8819 -7.5418 0.5762 15 6 4.7178 -8.4694 1.3793 16 6 5.5559 -9.3997 0.7591 17 6 6.3123 -10.2471 1.5430 18 7 6.2597 -10.1796 2.8593 19 6 5.4831 -9.3168 3.4845 20 6 4.6886 -8.4357 2.7762 21 35 3.5780 -7.2029 3.6833 22 7 3.8254 -7.4801 -0.7283 23 8 3.0462 -6.6162 -1.0716 24 1 -0.4849 0.8401 -0.0004 25 1 0.6240 -2.5575 -0.8881 26 1 0.6247 -2.5563 0.8920 27 1 2.8405 -3.5494 -0.7787 28 1 0.8807 -4.9820 -0.8869 29 1 0.8801 -4.9810 0.8930 30 1 5.6075 -9.4578 -0.3182 31 1 6.9592 -10.9726 1.0723 32 1 5.4676 -9.2987 4.5642 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001211454753.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:39 Heat of formation + Delta-G solvation = 119.633601 kcal Electronic energy + Delta-G solvation = -19733.023081 eV Core-core repulsion = 16357.801855 eV Total energy + Delta-G solvation = -3375.221226 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 338.012 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -45.56266 -40.56351 -36.30127 -35.84101 -33.67196 -32.91211 -32.48266 -31.43372 -29.72471 -27.99022 -25.60231 -25.20070 -23.84782 -22.91656 -21.76037 -21.28749 -18.22631 -18.09383 -16.99429 -16.81859 -16.35345 -15.86194 -15.27820 -14.69083 -14.63156 -14.47514 -14.13948 -13.84446 -13.45853 -13.00829 -12.30902 -12.29315 -12.20850 -11.78950 -11.46116 -11.38133 -11.29011 -10.87453 -10.83099 -10.56934 -10.22200 -10.07435 -9.61797 -9.58572 -9.32882 -9.15362 -8.59186 -7.64363 -6.13326 -4.15684 0.12919 0.49570 1.28025 1.36980 2.34099 2.79829 3.17609 3.26728 3.28946 3.34563 3.39599 3.72770 3.97059 4.34429 4.36572 4.46698 4.68475 4.79815 5.10420 5.17388 5.23249 5.25018 5.42670 5.50888 5.65371 5.83054 5.95648 6.01206 6.95577 7.18803 7.35980 7.60257 7.94795 8.05333 8.09050 8.35147 8.92175 9.49760 10.97699 Molecular weight = 338.01amu Principal moments of inertia in cm(-1) A = 0.019366 B = 0.003018 C = 0.002813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.464994 B = 9274.822091 C = 9952.483439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.058 3.942 3 Si 0.901 3.099 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.517 4.517 8 H 0.064 0.936 9 C 0.196 3.804 10 N -0.680 5.680 11 C 0.147 3.853 12 C 0.208 3.792 13 N -0.437 5.437 14 C 0.185 3.815 15 C 0.060 3.940 16 C -0.138 4.138 17 C 0.112 3.888 18 N -0.468 5.468 19 C 0.131 3.869 20 C -0.121 4.121 21 Br 0.018 6.982 22 N -0.368 5.368 23 O 0.085 5.915 24 H 0.262 0.738 25 H -0.005 1.005 26 H 0.035 0.965 27 H 0.336 0.664 28 H 0.063 0.937 29 H 0.115 0.885 30 H 0.151 0.849 31 H 0.170 0.830 32 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.138 -20.929 4.275 22.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.144 4.144 3 Si 0.728 3.272 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.555 4.555 8 H 0.083 0.917 9 C 0.070 3.930 10 N -0.313 5.313 11 C 0.015 3.985 12 C -0.013 4.013 13 N -0.170 5.170 14 C -0.084 4.084 15 C 0.049 3.951 16 C -0.160 4.160 17 C -0.045 4.045 18 N -0.178 5.178 19 C -0.028 4.028 20 C -0.205 4.205 21 Br 0.104 6.896 22 N -0.073 5.073 23 O 0.021 5.979 24 H 0.072 0.928 25 H 0.013 0.987 26 H 0.053 0.947 27 H 0.152 0.848 28 H 0.081 0.919 29 H 0.133 0.867 30 H 0.169 0.831 31 H 0.187 0.813 32 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 8.669 -21.487 5.714 23.864 hybrid contribution -0.293 1.357 -1.739 2.226 sum 8.376 -20.130 3.974 22.162 Atomic orbital electron populations 1.69958 1.06067 1.26942 1.50538 1.24968 0.94905 0.99433 0.95101 0.86398 0.80076 0.83117 0.77585 1.19611 1.21015 1.20903 1.21140 0.93653 0.89863 1.50880 0.91741 1.19651 0.90308 0.86498 0.96518 1.60793 1.21384 0.99577 1.49519 1.20545 0.89446 0.84494 1.03986 1.29401 0.96048 0.96360 0.79526 1.72717 1.09725 1.07488 1.27040 1.23570 0.99127 0.97890 0.87847 1.17549 0.94095 0.93146 0.90321 1.22290 0.96021 0.95084 1.02597 1.22866 0.96040 0.96600 0.88996 1.67754 1.18485 1.20359 1.11191 1.22877 0.89918 0.89132 1.00875 1.23258 1.02080 1.00763 0.94404 1.96930 1.63253 1.55370 1.74068 1.74816 1.09920 1.08055 1.14521 1.85280 1.40867 1.35299 1.36461 0.92791 0.98716 0.94682 0.84753 0.91914 0.86748 0.83143 0.81270 0.81090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.65 13.29 55.43 0.74 -24.91 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.90 21.09 29.54 -169.99 -5.02 16.07 16 4 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.52 -13.95 9.32 -34.44 -0.32 -14.27 16 8 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16 9 C 0.20 4.71 5.44 -4.97 -0.03 4.68 16 10 N -0.68 -13.31 6.48 -116.34 -0.75 -14.06 16 11 C 0.15 2.27 6.31 -4.98 -0.03 2.23 16 12 C 0.21 3.15 8.01 -12.99 -0.10 3.05 16 13 N -0.44 -6.91 8.61 -9.89 -0.09 -7.00 16 14 C 0.19 2.75 7.75 -156.14 -1.21 1.54 16 15 C 0.06 0.77 5.91 -104.55 -0.62 0.15 16 16 C -0.14 -1.37 9.79 -39.10 -0.38 -1.75 16 17 C 0.11 0.95 11.17 -17.60 -0.20 0.76 16 18 N -0.47 -4.76 10.34 -13.30 -0.14 -4.90 16 19 C 0.13 1.33 10.94 -17.57 -0.19 1.13 16 20 C -0.12 -1.45 6.27 -39.03 -0.24 -1.70 16 21 Br 0.02 0.23 30.72 -68.01 -2.09 -1.86 16 22 N -0.37 -5.45 11.95 30.96 0.37 -5.08 16 23 O 0.08 1.25 11.29 18.02 0.20 1.45 16 24 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 25 H 0.00 -0.12 8.14 -51.93 -0.42 -0.55 16 26 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.34 6.30 8.71 -39.29 -0.34 5.96 16 28 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 29 H 0.11 1.73 8.14 -51.93 -0.42 1.31 16 30 H 0.15 1.29 7.96 -52.49 -0.42 0.87 16 31 H 0.17 0.85 8.06 -52.49 -0.42 0.43 16 32 H 0.17 1.31 8.06 -52.49 -0.42 0.89 16 LS Contribution 311.38 15.07 4.69 4.69 Total: -1.00 -30.27 311.38 -8.35 -38.62 By element: Atomic # 1 Polarization: 2.50 SS G_CDS: -2.84 Total: -0.34 kcal Atomic # 6 Polarization: 0.75 SS G_CDS: -3.43 Total: -2.68 kcal Atomic # 7 Polarization: -56.08 SS G_CDS: 0.13 Total: -55.95 kcal Atomic # 8 Polarization: 1.25 SS G_CDS: 0.20 Total: 1.45 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Atomic # 35 Polarization: 0.23 SS G_CDS: -2.09 Total: -1.86 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -30.27 -8.35 -38.62 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001211454753.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.250 kcal (2) G-P(sol) polarization free energy of solvation -30.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.617 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds