Wall clock time and date at job start Tue Mar 31 2020 20:27:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 119.99556 * 2 1 4 4 H 1.48501 * 109.46922 * 240.00079 * 3 2 1 5 5 H 1.48504 * 109.47035 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47292 * 120.00256 * 3 2 1 7 7 C 1.37873 * 120.00524 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00280 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00039 * 359.97438 * 7 2 1 10 10 N 1.46898 * 109.47116 * 180.02562 * 9 7 2 11 11 C 1.46904 * 110.99726 * 180.02562 * 10 9 7 12 12 C 1.50705 * 109.46846 * 179.97438 * 11 10 9 13 13 N 1.30975 * 126.44036 * 90.00246 * 12 11 10 14 14 C 1.35206 * 105.58148 * 180.02562 * 13 12 11 15 15 C 1.48456 * 126.41298 * 180.02562 * 14 13 12 16 16 N 1.32634 * 119.72667 * 0.02562 * 15 14 13 17 17 C 1.31674 * 121.63965 * 179.68027 * 16 15 14 18 18 C 1.38375 * 120.91259 * 0.59937 * 17 16 15 19 19 C 1.38661 * 119.35801 * 359.41705 * 18 17 16 20 20 C 1.38616 * 118.49106 * 0.28166 * 19 18 17 21 21 Br 1.89099 * 120.47551 * 179.97438 * 20 19 18 22 22 N 1.30739 * 107.17616 * 0.25732 * 14 13 12 23 23 O 1.21292 * 110.10202 * 359.54622 * 22 14 13 24 24 H 0.96994 * 120.00383 * 359.97438 * 1 2 3 25 25 H 1.09009 * 109.46714 * 60.00774 * 9 7 2 26 26 H 1.08993 * 109.47308 * 300.00440 * 9 7 2 27 27 H 1.00898 * 111.00198 * 303.95467 * 10 9 7 28 28 H 1.09000 * 109.47360 * 60.00011 * 11 10 9 29 29 H 1.08990 * 109.47008 * 299.99915 * 11 10 9 30 30 H 1.08005 * 119.54647 * 180.28823 * 17 16 15 31 31 H 1.08002 * 120.32515 * 179.69954 * 18 17 16 32 32 H 1.07996 * 120.75678 * 180.25807 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1027 1.6965 -1.2125 5 1 1.2839 2.7465 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 7 2.2059 -3.6156 -0.0005 11 6 1.5057 -4.9070 -0.0011 12 6 2.5153 -6.0258 -0.0018 13 7 3.0365 -6.6040 1.0516 14 6 3.8834 -7.5413 0.5696 15 6 4.7199 -8.4691 1.3718 16 7 4.6723 -8.4192 2.6963 17 6 5.3932 -9.2283 3.4443 18 6 6.2422 -10.1586 2.8712 19 6 6.3229 -10.2451 1.4897 20 6 5.5481 -9.3851 0.7270 21 35 5.6150 -9.4539 -1.1616 22 7 3.8315 -7.4743 -0.7350 23 8 3.0476 -6.6144 -1.0774 24 1 -0.4850 0.8400 0.0004 25 1 0.6243 -2.5567 -0.8905 26 1 0.6249 -2.5571 0.8896 27 1 2.8408 -3.5485 -0.7819 28 1 0.8811 -4.9812 -0.8913 29 1 0.8805 -4.9817 0.8885 30 1 5.3248 -9.1614 4.5201 31 1 6.8328 -10.8143 3.4939 32 1 6.9748 -10.9657 1.0185 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001211454943.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:47 Heat of formation + Delta-G solvation = 98.984470 kcal Electronic energy + Delta-G solvation = -19653.168605 eV Core-core repulsion = 16277.051965 eV Total energy + Delta-G solvation = -3376.116640 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 338.012 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -46.66519 -41.37222 -37.64790 -36.90190 -34.99510 -34.44084 -33.80579 -32.51686 -30.73025 -29.66672 -26.85209 -26.47484 -24.62215 -24.03319 -23.56195 -22.42485 -19.32228 -19.24836 -18.55745 -18.02123 -17.35092 -16.93928 -16.69325 -16.41954 -15.63723 -15.55198 -15.25759 -14.96018 -14.46381 -14.33667 -14.03345 -13.34619 -13.25619 -13.09597 -12.98740 -12.70397 -12.60957 -12.53065 -12.28896 -12.08278 -11.55107 -11.33393 -11.18229 -10.73473 -10.65660 -10.63407 -10.01264 -9.28332 -8.21050 -6.30944 -0.77045 -0.12890 0.15478 0.32977 1.20435 1.44190 1.46729 1.54564 1.64421 2.06167 2.42261 2.53847 2.61015 3.13389 3.44957 3.55505 3.61027 3.76335 3.81383 4.04340 4.23072 4.31140 4.39602 4.58576 4.74091 4.83337 4.88189 5.06348 5.25855 5.35582 5.59184 5.98179 6.31126 6.55236 6.61268 6.85194 6.96748 7.38957 8.89975 Molecular weight = 338.01amu Principal moments of inertia in cm(-1) A = 0.020944 B = 0.002604 C = 0.002477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.554395 B =10751.256241 C =11300.446492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.007 3.993 3 Si 0.968 3.032 4 H -0.267 1.267 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.539 4.539 8 H 0.061 0.939 9 C 0.211 3.789 10 N -0.687 5.687 11 C 0.153 3.847 12 C 0.204 3.796 13 N -0.464 5.464 14 C 0.185 3.815 15 C 0.195 3.805 16 N -0.477 5.477 17 C 0.111 3.889 18 C -0.126 4.126 19 C -0.046 4.046 20 C -0.132 4.132 21 Br -0.008 7.008 22 N -0.347 5.347 23 O 0.083 5.917 24 H 0.266 0.734 25 H -0.017 1.017 26 H 0.013 0.987 27 H 0.341 0.659 28 H 0.089 0.911 29 H 0.116 0.884 30 H 0.203 0.797 31 H 0.201 0.799 32 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.124 -26.827 1.998 30.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.192 4.192 3 Si 0.793 3.207 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.577 4.577 8 H 0.079 0.921 9 C 0.084 3.916 10 N -0.320 5.320 11 C 0.023 3.977 12 C -0.017 4.017 13 N -0.196 5.196 14 C -0.086 4.086 15 C 0.057 3.943 16 N -0.188 5.188 17 C -0.048 4.048 18 C -0.147 4.147 19 C -0.073 4.073 20 C -0.217 4.217 21 Br 0.078 6.922 22 N -0.054 5.054 23 O 0.021 5.979 24 H 0.075 0.925 25 H 0.001 0.999 26 H 0.031 0.969 27 H 0.158 0.842 28 H 0.107 0.893 29 H 0.134 0.866 30 H 0.220 0.780 31 H 0.219 0.781 32 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 14.035 -26.689 2.267 30.240 hybrid contribution 0.055 0.662 -0.959 1.166 sum 14.089 -26.028 1.308 29.625 Atomic orbital electron populations 1.70042 1.07508 1.28139 1.51196 1.25825 0.95762 1.02986 0.94590 0.85457 0.78190 0.78084 0.78998 1.19215 1.20691 1.19718 1.21459 0.93772 0.91451 1.51045 0.92080 1.19267 0.90252 0.87258 0.94789 1.60553 1.21080 1.00310 1.50105 1.20491 0.89407 0.82534 1.05313 1.29006 0.96365 0.96518 0.79823 1.72117 1.10459 1.08184 1.28886 1.23803 0.99094 0.97862 0.87820 1.17847 0.94143 0.92634 0.89714 1.67601 1.22648 1.24589 1.03979 1.23736 0.89892 0.89197 1.01990 1.22932 0.98300 0.98857 0.94610 1.22062 0.95202 0.95662 0.94384 1.23074 1.03151 1.01897 0.93535 1.96813 1.97457 1.97559 1.00402 1.75534 1.08885 1.07239 1.13762 1.85339 1.40595 1.35764 1.36214 0.92496 0.99921 0.96854 0.84175 0.89281 0.86612 0.77990 0.78149 0.79815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.54 13.29 21.45 0.28 -54.26 16 2 C 0.01 0.41 5.46 84.65 0.46 0.87 16 3 Si 0.97 43.85 29.54 68.60 2.03 45.88 16 4 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 5 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 6 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 7 C -0.54 -30.07 9.32 25.60 0.24 -29.83 16 8 H 0.06 3.36 7.81 -2.91 -0.02 3.33 16 9 C 0.21 10.69 5.44 85.56 0.47 11.16 16 10 N -0.69 -28.67 6.48 -521.98 -3.38 -32.05 16 11 C 0.15 5.12 6.31 85.56 0.54 5.66 16 12 C 0.20 6.90 8.01 88.36 0.71 7.61 16 13 N -0.46 -17.23 11.56 -302.54 -3.50 -20.72 16 14 C 0.18 6.30 7.83 137.32 1.08 7.38 16 15 C 0.20 5.65 6.76 42.01 0.28 5.94 16 16 N -0.48 -12.87 10.29 -184.73 -1.90 -14.77 16 17 C 0.11 1.68 11.18 84.75 0.95 2.62 16 18 C -0.13 -1.10 10.11 22.40 0.23 -0.87 16 19 C -0.05 -0.59 9.93 22.46 0.22 -0.36 16 20 C -0.13 -2.92 6.27 22.62 0.14 -2.78 16 21 Br -0.01 -0.18 30.55 -20.37 -0.62 -0.80 16 22 N -0.35 -11.34 9.02 -59.17 -0.53 -11.88 16 23 O 0.08 2.68 11.29 74.60 0.84 3.52 16 24 H 0.27 14.74 8.31 -92.71 -0.77 13.97 16 25 H -0.02 -0.88 8.14 -2.38 -0.02 -0.90 16 26 H 0.01 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.34 13.55 8.71 -89.70 -0.78 12.77 16 28 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 29 H 0.12 3.82 8.14 -2.39 -0.02 3.81 16 30 H 0.20 1.56 8.06 -2.91 -0.02 1.54 16 31 H 0.20 -0.24 8.06 -2.91 -0.02 -0.27 16 32 H 0.18 1.07 8.06 -2.91 -0.02 1.05 16 Total: -1.00 -72.11 311.53 -1.07 -73.19 By element: Atomic # 1 Polarization: 4.12 SS G_CDS: 0.40 Total: 4.51 kcal Atomic # 6 Polarization: 2.07 SS G_CDS: 5.31 Total: 7.38 kcal Atomic # 7 Polarization: -124.65 SS G_CDS: -9.03 Total: -133.68 kcal Atomic # 8 Polarization: 2.68 SS G_CDS: 0.84 Total: 3.52 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Atomic # 35 Polarization: -0.18 SS G_CDS: -0.62 Total: -0.80 kcal Total: -72.11 -1.07 -73.19 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001211454943.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.174 kcal (2) G-P(sol) polarization free energy of solvation -72.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.189 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds