Wall clock time and date at job start Tue Mar 31 2020 20:55:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.45203 * 109.46746 * 2 1 4 4 C 1.34234 * 116.99395 * 179.97438 * 3 2 1 5 5 O 1.20822 * 120.00351 * 0.02562 * 4 3 2 6 6 C 1.50701 * 119.99649 * 180.02562 * 4 3 2 7 7 C 1.52999 * 109.47214 * 180.02562 * 6 4 3 8 8 H 1.08999 * 109.46898 * 55.00023 * 7 6 4 9 9 C 1.50702 * 109.47038 * 174.99651 * 7 6 4 10 10 H 1.07999 * 120.00194 * 240.00028 * 9 7 6 11 11 C 1.37873 * 119.99715 * 60.00586 * 9 7 6 12 12 N 1.31513 * 120.00284 * 359.97438 * 11 9 7 13 13 Si 1.86800 * 119.99926 * 179.97438 * 11 9 7 14 14 H 1.48501 * 109.47288 * 59.99669 * 13 11 9 15 15 H 1.48500 * 109.47348 * 179.97438 * 13 11 9 16 16 H 1.48505 * 109.47179 * 299.99739 * 13 11 9 17 17 O 1.42892 * 109.46966 * 295.00049 * 7 6 4 18 18 C 1.42902 * 113.99753 * 149.99804 * 17 7 6 19 19 F 1.39901 * 115.54874 * 34.33185 * 18 17 7 20 20 C 1.52999 * 117.50077 * 248.61856 * 18 17 7 21 21 C 1.53001 * 60.00190 * 252.51226 * 20 18 17 22 22 H 1.09002 * 117.49822 * 252.51020 * 21 20 18 23 23 C 1.53003 * 117.51964 * 107.47982 * 21 20 18 24 24 Br 1.96595 * 109.47065 * 231.28527 * 23 21 20 25 25 H 1.09001 * 109.46843 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.46927 * 299.99679 * 1 2 3 27 27 H 1.08998 * 109.46831 * 60.00091 * 1 2 3 28 28 H 1.09000 * 109.46899 * 240.00796 * 2 1 3 29 29 H 1.08989 * 109.47078 * 120.00474 * 2 1 3 30 30 H 1.08997 * 109.47087 * 59.99521 * 6 4 3 31 31 H 1.09007 * 109.47169 * 300.00355 * 6 4 3 32 32 H 0.97004 * 120.00152 * 179.97438 * 12 11 9 33 33 H 1.09001 * 117.50150 * 145.02485 * 20 18 17 34 34 H 1.08995 * 117.49529 * 0.02562 * 20 18 17 35 35 H 1.09005 * 109.46643 * 351.28298 * 23 21 20 36 36 H 1.08996 * 109.47432 * 111.28196 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3448 1.5448 0.0005 5 8 4.0808 0.5867 0.0005 6 6 3.9207 2.9374 0.0012 7 6 5.4486 2.8574 0.0010 8 1 5.7806 2.2502 -0.8411 9 6 6.0243 4.2447 -0.1223 10 1 6.6590 4.4935 -0.9599 11 6 5.7407 5.1962 0.8344 12 7 4.9675 4.8934 1.8542 13 14 6.4548 6.9156 0.6820 14 1 5.9919 7.5332 -0.5867 15 1 6.0020 7.7431 1.8289 16 1 7.9378 6.8375 0.6822 17 8 5.8945 2.2634 1.2217 18 6 7.1177 1.5345 1.1005 19 9 8.0423 2.0548 0.1886 20 6 7.0514 0.0133 1.2498 21 6 7.6689 0.8648 2.3610 22 1 8.7519 0.8292 2.4795 23 6 6.8685 1.0272 3.6548 24 35 6.7273 2.9362 4.1029 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5137 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 3.5844 3.4693 0.8911 31 1 3.5850 3.4699 -0.8888 32 1 4.7683 5.5627 2.5274 33 1 7.7282 -0.5826 0.6374 34 1 6.0748 -0.4316 1.4401 35 1 5.8702 0.6110 3.5190 36 1 7.3747 0.5005 4.4638 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224452115.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:55:22 Heat of formation + Delta-G solvation = -164.019973 kcal Electronic energy + Delta-G solvation = -22938.465001 eV Core-core repulsion = 19191.422000 eV Total energy + Delta-G solvation = -3747.043001 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 338.036 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -48.40703 -41.26844 -38.92193 -37.59017 -36.68674 -34.27150 -32.73813 -31.73728 -31.36964 -27.90181 -27.53421 -24.61007 -23.37297 -22.63636 -21.50580 -21.42531 -19.01037 -18.52993 -17.67898 -17.39398 -17.28239 -16.75246 -16.37140 -15.82100 -15.44274 -14.93694 -14.66708 -14.37548 -14.17673 -14.05022 -13.83736 -13.60870 -13.41942 -13.15406 -12.90471 -12.83646 -12.78097 -12.66000 -12.46457 -12.39972 -12.21795 -11.51077 -11.39959 -11.31058 -11.18160 -10.81805 -10.52869 -10.42258 -10.16941 -9.52773 -7.95089 -6.15183 1.06059 1.43437 1.45092 1.47881 1.52207 1.94672 2.49871 2.64453 2.84404 3.24403 3.43131 3.72739 3.93852 4.06340 4.07571 4.20278 4.20927 4.40495 4.45912 4.57867 4.68012 4.73414 4.77685 4.87456 4.94818 4.96969 5.11358 5.17333 5.19468 5.51703 5.66488 5.87464 6.23083 6.64150 6.97687 7.04662 7.58786 9.02525 Molecular weight = 338.04amu Principal moments of inertia in cm(-1) A = 0.010443 B = 0.006514 C = 0.005249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2680.636688 B = 4297.488256 C = 5332.674137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.051 3.949 3 O -0.370 6.370 4 C 0.465 3.535 5 O -0.530 6.530 6 C -0.095 4.095 7 C 0.236 3.764 8 H -0.001 1.001 9 C -0.574 4.574 10 H 0.040 0.960 11 C 0.068 3.932 12 N -0.843 5.843 13 Si 0.926 3.074 14 H -0.271 1.271 15 H -0.283 1.283 16 H -0.288 1.288 17 O -0.311 6.311 18 C 0.193 3.807 19 F -0.199 7.199 20 C -0.170 4.170 21 C -0.143 4.143 22 H 0.137 0.863 23 C -0.038 4.038 24 Br -0.154 7.154 25 H 0.102 0.898 26 H 0.065 0.935 27 H 0.068 0.932 28 H 0.066 0.934 29 H 0.062 0.938 30 H 0.124 0.876 31 H 0.103 0.897 32 H 0.260 0.740 33 H 0.118 0.882 34 H 0.110 0.890 35 H 0.092 0.908 36 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.079 -10.119 3.584 11.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.023 4.023 3 O -0.288 6.288 4 C 0.310 3.690 5 O -0.420 6.420 6 C -0.133 4.133 7 C 0.180 3.820 8 H 0.017 0.983 9 C -0.611 4.611 10 H 0.059 0.941 11 C -0.139 4.139 12 N -0.478 5.478 13 Si 0.753 3.247 14 H -0.196 1.196 15 H -0.208 1.208 16 H -0.214 1.214 17 O -0.230 6.230 18 C 0.133 3.867 19 F -0.180 7.180 20 C -0.208 4.208 21 C -0.163 4.163 22 H 0.154 0.846 23 C -0.154 4.154 24 Br -0.074 7.074 25 H 0.121 0.879 26 H 0.084 0.916 27 H 0.087 0.913 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.142 0.858 31 H 0.121 0.879 32 H 0.069 0.931 33 H 0.137 0.863 34 H 0.128 0.872 35 H 0.111 0.889 36 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -3.143 -9.674 4.072 10.956 hybrid contribution 0.875 0.618 -0.570 1.214 sum -2.267 -9.056 3.502 9.971 Atomic orbital electron populations 1.21806 0.90382 1.04295 1.03517 1.23223 0.97139 0.79836 1.02066 1.86564 1.24662 1.33419 1.84167 1.24509 0.80180 0.93519 0.70799 1.90523 1.60784 1.43841 1.46820 1.21647 0.96221 0.89027 1.06403 1.19157 0.89068 0.91161 0.82566 0.98277 1.21326 1.33107 0.96681 1.10011 0.94139 1.25223 0.94392 0.99893 0.94418 1.69928 1.34040 1.33753 1.10030 0.86153 0.78622 0.82232 0.77692 1.19638 1.20824 1.21411 1.88266 1.32277 1.68162 1.34301 1.21367 0.82758 0.90855 0.91688 1.92828 1.67182 1.88803 1.69137 1.24188 1.03435 0.93220 0.99990 1.23377 1.00971 1.02255 0.89653 0.84564 1.24056 1.03546 0.89273 0.98523 1.97502 1.99032 1.16904 1.93930 0.87906 0.91633 0.91334 0.91584 0.91934 0.85850 0.87921 0.93059 0.86345 0.87205 0.88922 0.85178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.68 10.29 71.98 0.74 -1.94 16 2 C 0.05 1.36 6.19 71.98 0.45 1.81 16 3 O -0.37 -13.11 10.22 -51.45 -0.53 -13.63 16 4 C 0.46 19.10 7.84 71.24 0.56 19.66 16 5 O -0.53 -22.92 14.92 27.05 0.40 -22.52 16 6 C -0.10 -4.29 5.22 29.85 0.16 -4.13 16 7 C 0.24 11.80 1.49 29.85 0.04 11.84 16 8 H 0.00 -0.04 7.48 -2.39 -0.02 -0.06 16 9 C -0.57 -30.92 8.44 25.60 0.22 -30.71 16 10 H 0.04 2.26 7.81 -2.91 -0.02 2.24 16 11 C 0.07 3.54 5.24 84.65 0.44 3.98 16 12 N -0.84 -43.57 10.93 21.45 0.23 -43.33 16 13 Si 0.93 42.82 29.54 68.60 2.03 44.85 16 14 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 15 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 16 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 17 O -0.31 -14.80 7.13 -135.16 -0.96 -15.76 16 18 C 0.19 8.23 3.65 30.60 0.11 8.34 16 19 F -0.20 -9.47 16.36 44.97 0.74 -8.73 16 20 C -0.17 -5.66 10.11 30.59 0.31 -5.35 16 21 C -0.14 -4.70 5.86 -10.79 -0.06 -4.76 16 22 H 0.14 3.89 8.14 -2.39 -0.02 3.87 16 23 C -0.04 -1.17 6.58 71.98 0.47 -0.70 16 24 Br -0.15 -6.01 32.51 -20.37 -0.66 -6.67 16 25 H 0.10 1.33 8.14 -2.39 -0.02 1.32 16 26 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 27 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.07 1.72 8.13 -2.39 -0.02 1.70 16 29 H 0.06 1.69 8.13 -2.39 -0.02 1.67 16 30 H 0.12 6.02 6.22 -2.39 -0.01 6.01 16 31 H 0.10 4.34 8.14 -2.38 -0.02 4.33 16 32 H 0.26 13.19 8.31 -92.71 -0.77 12.42 16 33 H 0.12 3.41 8.14 -2.39 -0.02 3.39 16 34 H 0.11 3.76 7.81 -2.39 -0.02 3.74 16 35 H 0.09 2.93 7.90 -2.38 -0.02 2.91 16 36 H 0.13 2.93 8.14 -2.39 -0.02 2.91 16 Total: -1.00 -61.27 332.63 5.77 -55.50 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: 1.08 Total: 12.25 kcal Atomic # 6 Polarization: -5.39 SS G_CDS: 3.44 Total: -1.95 kcal Atomic # 7 Polarization: -43.57 SS G_CDS: 0.23 Total: -43.33 kcal Atomic # 8 Polarization: -50.83 SS G_CDS: -1.09 Total: -51.91 kcal Atomic # 9 Polarization: -9.47 SS G_CDS: 0.74 Total: -8.73 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.85 kcal Atomic # 35 Polarization: -6.01 SS G_CDS: -0.66 Total: -6.67 kcal Total: -61.27 5.77 -55.50 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224452115.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.518 kcal (2) G-P(sol) polarization free energy of solvation -61.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds