Wall clock time and date at job start Tue Mar 31 2020 20:55:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45196 * 109.47226 * 2 1 4 4 C 1.34224 * 117.00240 * 180.02562 * 3 2 1 5 5 O 1.20825 * 120.00106 * 0.02562 * 4 3 2 6 6 C 1.50705 * 120.00344 * 180.02562 * 4 3 2 7 7 C 1.52997 * 109.47092 * 180.02562 * 6 4 3 8 8 H 1.08995 * 109.47505 * 54.99662 * 7 6 4 9 9 C 1.50706 * 109.46859 * 175.00095 * 7 6 4 10 10 H 1.08000 * 119.99302 * 239.99789 * 9 7 6 11 11 C 1.37871 * 120.00436 * 59.72322 * 9 7 6 12 12 N 1.31515 * 119.99684 * 359.97438 * 11 9 7 13 13 Si 1.86800 * 120.00405 * 180.02562 * 11 9 7 14 14 H 1.48496 * 109.46683 * 359.97438 * 13 11 9 15 15 H 1.48492 * 109.47426 * 119.99743 * 13 11 9 16 16 H 1.48501 * 109.46833 * 239.99986 * 13 11 9 17 17 O 1.42905 * 109.47012 * 294.99493 * 7 6 4 18 18 C 1.42900 * 113.99555 * 150.00220 * 17 7 6 19 19 F 1.39894 * 115.55454 * 330.67226 * 18 17 7 20 20 C 1.53004 * 117.49576 * 116.38122 * 18 17 7 21 21 C 1.53002 * 117.49580 * 185.00333 * 18 17 7 22 22 H 1.09001 * 117.50137 * 145.02247 * 21 18 17 23 23 C 1.53000 * 117.49977 * 359.97438 * 21 18 17 24 24 Br 1.96595 * 109.47170 * 64.99976 * 23 21 18 25 25 H 1.09000 * 109.47222 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46830 * 299.99982 * 1 2 3 27 27 H 1.09005 * 109.47271 * 59.99722 * 1 2 3 28 28 H 1.09003 * 109.46830 * 240.00018 * 2 1 3 29 29 H 1.08997 * 109.46979 * 120.00291 * 2 1 3 30 30 H 1.08999 * 109.47192 * 59.99812 * 6 4 3 31 31 H 1.09006 * 109.46785 * 299.99918 * 6 4 3 32 32 H 0.97004 * 120.00247 * 180.02562 * 12 11 9 33 33 H 1.09001 * 117.49764 * 214.97663 * 20 18 17 34 34 H 1.08995 * 117.49953 * 359.97438 * 20 18 17 35 35 H 1.09001 * 109.47189 * 185.00417 * 23 21 18 36 36 H 1.09003 * 109.47076 * 305.00051 * 23 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0807 0.5866 -0.0015 6 6 3.9207 2.9374 0.0000 7 6 5.4486 2.8573 -0.0014 8 1 5.7799 2.2502 -0.8439 9 6 6.0242 4.2446 -0.1247 10 1 6.6583 4.4935 -0.9628 11 6 5.7369 5.1975 0.8293 12 7 4.9600 4.8960 1.8468 13 14 6.4498 6.9173 0.6762 14 1 7.2847 6.9997 -0.5491 15 1 5.3447 7.9055 0.5900 16 1 7.2873 7.2137 1.8661 17 8 5.8956 2.2629 1.2189 18 6 7.1186 1.5341 1.0965 19 9 7.3588 0.9648 -0.1586 20 6 8.3269 2.0445 1.8841 21 6 7.6099 0.7670 2.3258 22 1 8.1206 -0.1810 2.1566 23 6 6.7544 0.8395 3.5922 24 35 5.0184 -0.0215 3.2605 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 3.5852 3.4691 0.8904 31 1 3.5844 3.4701 -0.8896 32 1 4.7575 5.5665 2.5178 33 1 9.3094 1.9369 1.4243 34 1 8.1891 2.9364 2.4953 35 1 7.2656 0.3251 4.4059 36 1 6.5963 1.8830 3.8646 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224452118.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:55:38 Heat of formation + Delta-G solvation = -153.798940 kcal Electronic energy + Delta-G solvation = -22971.599078 eV Core-core repulsion = 19224.999295 eV Total energy + Delta-G solvation = -3746.599783 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 338.036 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -46.87517 -39.54292 -37.30308 -36.00888 -34.96848 -32.52507 -31.46044 -30.39539 -29.72935 -26.25082 -26.09381 -23.14516 -21.83967 -21.17697 -20.01039 -19.69040 -17.32359 -16.81096 -16.06562 -15.80904 -15.62163 -15.12881 -14.61135 -14.31584 -13.91849 -13.46840 -13.04127 -12.97022 -12.82645 -12.62913 -12.41917 -12.20896 -11.93061 -11.66426 -11.35115 -11.25744 -11.22544 -11.02588 -10.97974 -10.67941 -10.37191 -9.99309 -9.89987 -9.50683 -9.34192 -9.24352 -9.16015 -9.04872 -8.65734 -7.87430 -6.12792 -4.30919 2.27280 3.19768 3.26728 3.30553 3.34456 3.49413 4.11274 4.31026 4.40544 4.76772 5.12642 5.17804 5.19021 5.25304 5.30993 5.48226 5.61242 5.67212 5.73791 5.98811 6.03777 6.05817 6.17382 6.19735 6.28588 6.51140 6.55230 6.75796 6.96961 7.20407 7.47836 7.75957 8.07348 8.46779 8.74950 8.86529 9.44527 10.88166 Molecular weight = 338.04amu Principal moments of inertia in cm(-1) A = 0.010206 B = 0.007164 C = 0.005120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2742.951198 B = 3907.502389 C = 5467.260091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.062 3.938 3 O -0.370 6.370 4 C 0.452 3.548 5 O -0.498 6.498 6 C -0.099 4.099 7 C 0.221 3.779 8 H 0.032 0.968 9 C -0.553 4.553 10 H 0.062 0.938 11 C 0.086 3.914 12 N -0.858 5.858 13 Si 0.888 3.112 14 H -0.272 1.272 15 H -0.282 1.282 16 H -0.283 1.283 17 O -0.301 6.301 18 C 0.250 3.750 19 F -0.185 7.185 20 C -0.189 4.189 21 C -0.169 4.169 22 H 0.114 0.886 23 C -0.034 4.034 24 Br -0.149 7.149 25 H 0.071 0.929 26 H 0.064 0.936 27 H 0.063 0.937 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.137 0.863 31 H 0.093 0.907 32 H 0.263 0.737 33 H 0.098 0.902 34 H 0.114 0.886 35 H 0.092 0.908 36 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.650 -8.070 3.016 8.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.012 4.012 3 O -0.288 6.288 4 C 0.296 3.704 5 O -0.384 6.384 6 C -0.137 4.137 7 C 0.166 3.834 8 H 0.050 0.950 9 C -0.591 4.591 10 H 0.081 0.919 11 C -0.120 4.120 12 N -0.494 5.494 13 Si 0.716 3.284 14 H -0.197 1.197 15 H -0.208 1.208 16 H -0.209 1.209 17 O -0.220 6.220 18 C 0.190 3.810 19 F -0.165 7.165 20 C -0.228 4.228 21 C -0.188 4.188 22 H 0.132 0.868 23 C -0.149 4.149 24 Br -0.069 7.069 25 H 0.090 0.910 26 H 0.083 0.917 27 H 0.082 0.918 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.155 0.845 31 H 0.111 0.889 32 H 0.073 0.927 33 H 0.117 0.883 34 H 0.132 0.868 35 H 0.110 0.890 36 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -2.243 -8.613 3.210 9.461 hybrid contribution 0.953 0.909 -0.167 1.327 sum -1.290 -7.704 3.042 8.383 Atomic orbital electron populations 1.21773 0.93582 1.02134 1.03209 1.22764 0.94579 0.82142 1.01760 1.86568 1.26605 1.30586 1.85091 1.24841 0.79353 0.94423 0.71793 1.90620 1.59846 1.43243 1.44707 1.21807 0.97168 0.88139 1.06572 1.19487 0.88356 0.92159 0.83442 0.94956 1.21492 1.32291 0.95385 1.09911 0.91939 1.24990 0.93960 0.98411 0.94624 1.69897 1.34474 1.33897 1.11102 0.86608 0.79178 0.84397 0.78249 1.19676 1.20792 1.20853 1.88328 1.33680 1.65140 1.34870 1.20700 0.89649 0.93624 0.77031 1.92816 1.94510 1.85427 1.43762 1.24147 0.97570 0.96996 1.04101 1.23275 1.02304 0.97799 0.95434 0.86764 1.23924 0.89481 1.03727 0.97804 1.97351 1.30549 1.81565 1.97407 0.91042 0.91702 0.91791 0.92094 0.92072 0.84538 0.88917 0.92673 0.88323 0.86763 0.88977 0.87543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 10.29 37.16 0.38 -1.39 16 2 C 0.06 0.97 6.19 37.16 0.23 1.20 16 3 O -0.37 -7.16 10.22 -39.24 -0.40 -7.56 16 4 C 0.45 9.85 7.84 36.01 0.28 10.13 16 5 O -0.50 -11.56 15.17 -24.05 -0.36 -11.92 16 6 C -0.10 -2.27 5.22 -27.88 -0.15 -2.42 16 7 C 0.22 5.44 1.79 -27.88 -0.05 5.39 16 8 H 0.03 0.83 6.46 -51.93 -0.34 0.49 16 9 C -0.55 -14.24 8.90 -34.44 -0.31 -14.55 16 10 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 11 C 0.09 2.18 5.24 -17.82 -0.09 2.09 16 12 N -0.86 -22.05 10.92 55.43 0.61 -21.45 16 13 Si 0.89 19.74 29.54 -169.99 -5.02 14.72 16 14 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 15 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 16 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 17 O -0.30 -7.14 7.56 -49.68 -0.38 -7.52 16 18 C 0.25 5.35 3.91 -26.73 -0.10 5.25 16 19 F -0.18 -4.20 16.00 2.25 0.04 -4.16 16 20 C -0.19 -3.40 10.11 -26.73 -0.27 -3.67 16 21 C -0.17 -2.91 5.81 -90.62 -0.53 -3.44 16 22 H 0.11 1.77 8.14 -51.93 -0.42 1.35 16 23 C -0.03 -0.55 6.48 37.16 0.24 -0.31 16 24 Br -0.15 -2.75 33.00 -68.01 -2.24 -4.99 16 25 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.06 0.93 8.13 -51.93 -0.42 0.51 16 29 H 0.06 1.00 8.13 -51.93 -0.42 0.58 16 30 H 0.14 3.39 6.20 -51.93 -0.32 3.06 16 31 H 0.09 1.98 8.14 -51.93 -0.42 1.56 16 32 H 0.26 6.50 8.31 -40.82 -0.34 6.16 16 33 H 0.10 1.56 8.14 -51.93 -0.42 1.14 16 34 H 0.11 2.13 8.08 -51.93 -0.42 1.71 16 35 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.11 1.87 7.94 -51.93 -0.41 1.46 16 LS Contribution 333.56 15.07 5.03 5.03 Total: -1.00 -28.16 333.56 -7.94 -36.10 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: -4.84 Total: 3.48 kcal Atomic # 6 Polarization: -1.36 SS G_CDS: -0.36 Total: -1.72 kcal Atomic # 7 Polarization: -22.05 SS G_CDS: 0.61 Total: -21.45 kcal Atomic # 8 Polarization: -25.86 SS G_CDS: -1.14 Total: -27.00 kcal Atomic # 9 Polarization: -4.20 SS G_CDS: 0.04 Total: -4.16 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -5.02 Total: 14.72 kcal Atomic # 35 Polarization: -2.75 SS G_CDS: -2.24 Total: -4.99 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -28.16 -7.94 -36.10 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224452118.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.701 kcal (2) G-P(sol) polarization free energy of solvation -28.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds