Wall clock time and date at job start Tue Mar 31 2020 20:55:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45196 * 109.47226 * 2 1 4 4 C 1.34224 * 117.00240 * 180.02562 * 3 2 1 5 5 O 1.20825 * 120.00106 * 0.02562 * 4 3 2 6 6 C 1.50705 * 120.00344 * 180.02562 * 4 3 2 7 7 C 1.52997 * 109.47092 * 180.02562 * 6 4 3 8 8 H 1.08995 * 109.47505 * 54.99662 * 7 6 4 9 9 C 1.50706 * 109.46859 * 175.00095 * 7 6 4 10 10 H 1.08000 * 119.99302 * 239.99789 * 9 7 6 11 11 C 1.37871 * 120.00436 * 59.72322 * 9 7 6 12 12 N 1.31515 * 119.99684 * 359.97438 * 11 9 7 13 13 Si 1.86800 * 120.00405 * 180.02562 * 11 9 7 14 14 H 1.48496 * 109.46683 * 359.97438 * 13 11 9 15 15 H 1.48492 * 109.47426 * 119.99743 * 13 11 9 16 16 H 1.48501 * 109.46833 * 239.99986 * 13 11 9 17 17 O 1.42905 * 109.47012 * 294.99493 * 7 6 4 18 18 C 1.42900 * 113.99555 * 150.00220 * 17 7 6 19 19 F 1.39894 * 115.55454 * 330.67226 * 18 17 7 20 20 C 1.53004 * 117.49576 * 116.38122 * 18 17 7 21 21 C 1.53002 * 117.49580 * 185.00333 * 18 17 7 22 22 H 1.09001 * 117.50137 * 145.02247 * 21 18 17 23 23 C 1.53000 * 117.49977 * 359.97438 * 21 18 17 24 24 Br 1.96595 * 109.47170 * 64.99976 * 23 21 18 25 25 H 1.09000 * 109.47222 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46830 * 299.99982 * 1 2 3 27 27 H 1.09005 * 109.47271 * 59.99722 * 1 2 3 28 28 H 1.09003 * 109.46830 * 240.00018 * 2 1 3 29 29 H 1.08997 * 109.46979 * 120.00291 * 2 1 3 30 30 H 1.08999 * 109.47192 * 59.99812 * 6 4 3 31 31 H 1.09006 * 109.46785 * 299.99918 * 6 4 3 32 32 H 0.97004 * 120.00247 * 180.02562 * 12 11 9 33 33 H 1.09001 * 117.49764 * 214.97663 * 20 18 17 34 34 H 1.08995 * 117.49953 * 359.97438 * 20 18 17 35 35 H 1.09001 * 109.47189 * 185.00417 * 23 21 18 36 36 H 1.09003 * 109.47076 * 305.00051 * 23 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0807 0.5866 -0.0015 6 6 3.9207 2.9374 0.0000 7 6 5.4486 2.8573 -0.0014 8 1 5.7799 2.2502 -0.8439 9 6 6.0242 4.2446 -0.1247 10 1 6.6583 4.4935 -0.9628 11 6 5.7369 5.1975 0.8293 12 7 4.9600 4.8960 1.8468 13 14 6.4498 6.9173 0.6762 14 1 7.2847 6.9997 -0.5491 15 1 5.3447 7.9055 0.5900 16 1 7.2873 7.2137 1.8661 17 8 5.8956 2.2629 1.2189 18 6 7.1186 1.5341 1.0965 19 9 7.3588 0.9648 -0.1586 20 6 8.3269 2.0445 1.8841 21 6 7.6099 0.7670 2.3258 22 1 8.1206 -0.1810 2.1566 23 6 6.7544 0.8395 3.5922 24 35 5.0184 -0.0215 3.2605 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 3.5852 3.4691 0.8904 31 1 3.5844 3.4701 -0.8896 32 1 4.7575 5.5665 2.5178 33 1 9.3094 1.9369 1.4243 34 1 8.1891 2.9364 2.4953 35 1 7.2656 0.3251 4.4059 36 1 6.5963 1.8830 3.8646 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224452118.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:55:37 Heat of formation + Delta-G solvation = -167.487538 kcal Electronic energy + Delta-G solvation = -22972.192660 eV Core-core repulsion = 19224.999295 eV Total energy + Delta-G solvation = -3747.193365 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 338.036 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -48.55495 -41.20604 -38.92330 -37.59716 -36.66528 -34.38973 -32.75491 -31.84537 -31.39644 -27.98143 -27.62811 -24.61312 -23.37538 -22.72641 -21.51512 -21.41486 -19.09558 -18.50510 -17.75072 -17.37525 -17.34000 -16.71671 -16.39771 -15.97775 -15.42620 -14.91774 -14.71921 -14.48328 -14.26835 -14.00335 -13.94178 -13.62842 -13.47638 -13.18687 -12.91029 -12.85261 -12.79720 -12.67818 -12.44421 -12.40897 -12.14778 -11.52012 -11.39810 -11.27795 -11.13445 -11.01588 -10.59988 -10.55740 -10.45820 -9.55029 -8.05551 -6.30747 0.92109 1.43430 1.49096 1.53632 1.58114 1.96647 2.45512 2.57578 2.89110 3.14670 3.36073 3.75118 3.91432 4.02466 4.06782 4.18899 4.21812 4.36774 4.38633 4.55320 4.66382 4.71560 4.80159 4.86463 4.92438 4.94050 5.12364 5.15529 5.18952 5.49371 5.64969 5.79991 6.14194 6.59079 6.94791 7.08056 7.47583 8.94400 Molecular weight = 338.04amu Principal moments of inertia in cm(-1) A = 0.010206 B = 0.007164 C = 0.005120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2742.951198 B = 3907.502389 C = 5467.260091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.054 3.946 3 O -0.373 6.373 4 C 0.458 3.542 5 O -0.514 6.514 6 C -0.095 4.095 7 C 0.226 3.774 8 H 0.010 0.990 9 C -0.573 4.573 10 H 0.050 0.950 11 C 0.056 3.944 12 N -0.874 5.874 13 Si 0.946 3.054 14 H -0.275 1.275 15 H -0.277 1.277 16 H -0.279 1.279 17 O -0.311 6.311 18 C 0.196 3.804 19 F -0.199 7.199 20 C -0.173 4.173 21 C -0.141 4.141 22 H 0.139 0.861 23 C -0.030 4.030 24 Br -0.171 7.171 25 H 0.101 0.899 26 H 0.064 0.936 27 H 0.071 0.929 28 H 0.064 0.936 29 H 0.052 0.948 30 H 0.120 0.880 31 H 0.100 0.900 32 H 0.265 0.735 33 H 0.122 0.878 34 H 0.106 0.894 35 H 0.134 0.866 36 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.513 -8.402 3.810 9.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.019 4.019 3 O -0.291 6.291 4 C 0.302 3.698 5 O -0.402 6.402 6 C -0.133 4.133 7 C 0.170 3.830 8 H 0.028 0.972 9 C -0.610 4.610 10 H 0.068 0.932 11 C -0.149 4.149 12 N -0.509 5.509 13 Si 0.772 3.228 14 H -0.200 1.200 15 H -0.203 1.203 16 H -0.205 1.205 17 O -0.230 6.230 18 C 0.137 3.863 19 F -0.180 7.180 20 C -0.212 4.212 21 C -0.160 4.160 22 H 0.157 0.843 23 C -0.146 4.146 24 Br -0.090 7.090 25 H 0.120 0.880 26 H 0.083 0.917 27 H 0.090 0.910 28 H 0.082 0.918 29 H 0.071 0.929 30 H 0.137 0.863 31 H 0.118 0.882 32 H 0.075 0.925 33 H 0.140 0.860 34 H 0.125 0.875 35 H 0.153 0.847 36 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -2.119 -8.950 4.008 10.032 hybrid contribution 0.905 0.948 -0.410 1.373 sum -1.214 -8.002 3.598 8.857 Atomic orbital electron populations 1.21797 0.90194 1.04248 1.03592 1.23134 0.97189 0.80082 1.01539 1.86536 1.24970 1.33044 1.84529 1.24463 0.80163 0.93638 0.71525 1.90604 1.60507 1.43566 1.45547 1.21618 0.96565 0.89060 1.06016 1.19296 0.89123 0.91335 0.83279 0.97152 1.21579 1.32895 0.96508 1.10041 0.93218 1.25485 0.94098 1.01108 0.94176 1.69991 1.34806 1.34786 1.11363 0.85720 0.78504 0.80668 0.77938 1.19989 1.20288 1.20492 1.88260 1.35045 1.65707 1.34033 1.21347 0.90416 0.96556 0.77950 1.92773 1.94558 1.85754 1.44918 1.24161 0.97344 0.97150 1.02546 1.23393 1.00771 0.98437 0.93409 0.84334 1.24073 0.88471 1.03431 0.98593 1.97356 1.32409 1.81712 1.97536 0.88022 0.91672 0.91040 0.91778 0.92904 0.86264 0.88220 0.92515 0.85985 0.87529 0.84743 0.88924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.04 10.29 71.98 0.74 -2.30 16 2 C 0.05 1.66 6.19 71.98 0.45 2.11 16 3 O -0.37 -14.38 10.22 -51.35 -0.52 -14.91 16 4 C 0.46 20.24 7.84 71.24 0.56 20.80 16 5 O -0.51 -24.24 15.17 27.04 0.41 -23.83 16 6 C -0.09 -4.45 5.22 29.85 0.16 -4.30 16 7 C 0.23 11.39 1.79 29.85 0.05 11.45 16 8 H 0.01 0.56 6.46 -2.39 -0.02 0.54 16 9 C -0.57 -30.05 8.90 25.60 0.23 -29.82 16 10 H 0.05 2.66 7.81 -2.91 -0.02 2.63 16 11 C 0.06 2.84 5.24 84.65 0.44 3.29 16 12 N -0.87 -45.08 10.92 21.45 0.23 -44.84 16 13 Si 0.95 40.41 29.54 68.60 2.03 42.44 16 14 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 15 H -0.28 -11.59 7.11 99.48 0.71 -10.88 16 16 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 17 O -0.31 -14.94 7.56 -135.17 -1.02 -15.96 16 18 C 0.20 8.37 3.91 30.60 0.12 8.49 16 19 F -0.20 -9.18 16.00 44.97 0.72 -8.46 16 20 C -0.17 -5.97 10.11 30.60 0.31 -5.66 16 21 C -0.14 -4.59 5.81 -10.79 -0.06 -4.65 16 22 H 0.14 3.87 8.14 -2.39 -0.02 3.85 16 23 C -0.03 -0.93 6.48 71.98 0.47 -0.46 16 24 Br -0.17 -6.13 33.00 -20.37 -0.67 -6.81 16 25 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 26 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 27 H 0.07 1.44 8.14 -2.38 -0.02 1.42 16 28 H 0.06 1.91 8.13 -2.39 -0.02 1.89 16 29 H 0.05 1.70 8.13 -2.39 -0.02 1.68 16 30 H 0.12 6.06 6.20 -2.39 -0.01 6.05 16 31 H 0.10 4.39 8.14 -2.38 -0.02 4.37 16 32 H 0.27 13.04 8.31 -92.71 -0.77 12.27 16 33 H 0.12 3.59 8.14 -2.39 -0.02 3.57 16 34 H 0.11 3.85 8.08 -2.39 -0.02 3.83 16 35 H 0.13 2.99 8.14 -2.39 -0.02 2.97 16 36 H 0.09 3.13 7.94 -2.39 -0.02 3.11 16 Total: -1.00 -60.98 333.56 5.71 -55.26 By element: Atomic # 1 Polarization: 17.09 SS G_CDS: 1.08 Total: 18.17 kcal Atomic # 6 Polarization: -4.52 SS G_CDS: 3.46 Total: -1.06 kcal Atomic # 7 Polarization: -45.08 SS G_CDS: 0.23 Total: -44.84 kcal Atomic # 8 Polarization: -53.57 SS G_CDS: -1.14 Total: -54.70 kcal Atomic # 9 Polarization: -9.18 SS G_CDS: 0.72 Total: -8.46 kcal Atomic # 14 Polarization: 40.41 SS G_CDS: 2.03 Total: 42.44 kcal Atomic # 35 Polarization: -6.13 SS G_CDS: -0.67 Total: -6.81 kcal Total: -60.98 5.71 -55.26 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224452118.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.223 kcal (2) G-P(sol) polarization free energy of solvation -60.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds