Wall clock time and date at job start Tue Mar 31 2020 21:09:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00108 * 2 1 4 4 H 1.48504 * 109.46982 * 239.99898 * 3 2 1 5 5 H 1.48503 * 109.47106 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47380 * 120.00041 * 3 2 1 7 7 C 1.37875 * 119.99752 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99776 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00227 * 0.02562 * 7 2 1 10 10 H 1.09003 * 109.47287 * 299.99627 * 9 7 2 11 11 C 1.52995 * 109.47446 * 59.99491 * 9 7 2 12 12 Cl 1.80300 * 109.47447 * 185.00288 * 11 9 7 13 13 O 1.42904 * 109.47441 * 179.97438 * 9 7 2 14 14 C 1.35421 * 117.00143 * 149.99829 * 13 9 7 15 15 N 1.32241 * 119.80162 * 359.97438 * 14 13 9 16 16 C 1.31878 * 121.79764 * 180.02562 * 15 14 13 17 17 C 1.50703 * 119.40425 * 179.97438 * 16 15 14 18 18 F 1.39905 * 109.47157 * 5.00034 * 17 16 15 19 19 F 1.39900 * 109.47159 * 245.00334 * 17 16 15 20 20 F 1.39897 * 109.47274 * 125.00026 * 17 16 15 21 21 C 1.38351 * 121.18844 * 0.26080 * 16 15 14 22 22 C 1.38338 * 119.45767 * 359.50829 * 21 16 15 23 23 C 1.39981 * 118.34663 * 0.47901 * 22 21 16 24 24 C 1.47535 * 120.59504 * 179.72710 * 23 22 21 25 25 N 1.34778 * 119.99967 * 0.02562 * 24 23 22 26 26 O 1.21586 * 120.00166 * 180.02562 * 24 23 22 27 27 H 0.97002 * 120.00028 * 0.02562 * 1 2 3 28 28 H 1.08997 * 109.47340 * 305.00462 * 11 9 7 29 29 H 1.09002 * 109.47222 * 65.00187 * 11 9 7 30 30 H 1.08005 * 120.27294 * 179.74279 * 21 16 15 31 31 H 1.07999 * 120.82415 * 180.22275 * 22 21 16 32 32 H 0.96996 * 120.00079 * 0.02562 * 25 24 23 33 33 H 0.96991 * 119.99816 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 1 0.6240 -2.5567 0.8903 11 6 0.3717 -2.5804 -1.2489 12 17 -0.6388 -4.0719 -1.1767 13 8 2.1795 -3.5853 0.0005 14 6 1.7848 -4.7317 0.6039 15 7 0.5861 -4.8038 1.1576 16 6 0.1618 -5.8999 1.7557 17 6 -1.2144 -5.9225 2.3695 18 9 -1.8750 -4.7243 2.0775 19 9 -1.1041 -6.0681 3.7565 20 9 -1.9418 -6.9959 1.8443 21 6 0.9595 -7.0275 1.8349 22 6 2.2213 -7.0094 1.2681 23 6 2.6503 -5.8350 0.6386 24 6 3.9890 -5.7590 0.0231 25 7 4.8108 -6.8264 0.0633 26 8 4.3508 -4.7334 -0.5205 27 1 -0.4850 0.8401 -0.0004 28 1 -0.2757 -1.7048 -1.2953 29 1 1.0037 -2.6124 -2.1365 30 1 0.5986 -7.9160 2.3318 31 1 2.8610 -7.8783 1.3139 32 1 4.5220 -7.6448 0.4966 33 1 5.6907 -6.7765 -0.3417 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225997886.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:09:16 Heat of formation + Delta-G solvation = -191.227958 kcal Electronic energy + Delta-G solvation = -27936.439204 eV Core-core repulsion = 23188.016203 eV Total energy + Delta-G solvation = -4748.423000 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 338.043 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.98192 -47.56902 -47.33827 -40.76265 -38.69888 -37.67848 -34.76209 -33.92270 -33.45612 -32.35930 -31.20081 -29.23684 -26.94271 -25.28132 -23.62680 -23.26297 -21.27727 -20.74832 -18.87057 -18.40425 -18.29423 -17.93150 -17.19218 -16.60695 -16.55155 -15.48180 -15.28803 -14.79122 -14.74104 -14.42999 -14.18877 -14.17368 -13.95458 -13.91317 -13.55657 -13.50096 -13.44813 -13.15644 -12.89152 -12.68744 -12.05692 -11.94899 -11.69303 -11.12528 -11.01194 -10.75161 -10.36435 -10.18192 -10.05127 -9.75860 -9.62346 -9.44982 -9.23382 -9.15404 -8.62522 -8.11162 -6.35341 -4.43392 0.46716 1.29297 2.54336 2.93055 3.20345 3.25089 3.27764 3.43436 3.49398 3.62629 3.72915 3.79529 4.08782 4.26989 4.52601 4.66629 4.77674 4.92240 4.99145 5.01311 5.29347 5.66822 5.76127 6.13216 6.30617 6.36566 6.81130 6.89696 7.23107 7.31530 7.53198 7.70506 7.90005 8.13294 8.38889 8.70209 9.22875 10.71523 Molecular weight = 338.04amu Principal moments of inertia in cm(-1) A = 0.010376 B = 0.005656 C = 0.004262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2697.824196 B = 4949.682154 C = 6567.539913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.065 3.935 3 Si 0.917 3.083 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.523 4.523 8 H 0.077 0.923 9 C 0.205 3.795 10 H 0.069 0.931 11 C -0.030 4.030 12 Cl -0.237 7.237 13 O -0.255 6.255 14 C 0.402 3.598 15 N -0.473 5.473 16 C 0.111 3.889 17 C 0.517 3.483 18 F -0.151 7.151 19 F -0.174 7.174 20 F -0.174 7.174 21 C -0.196 4.196 22 C -0.010 4.010 23 C -0.208 4.208 24 C 0.566 3.434 25 N -0.858 5.858 26 O -0.499 6.499 27 H 0.272 0.728 28 H 0.135 0.865 29 H 0.071 0.929 30 H 0.146 0.854 31 H 0.148 0.852 32 H 0.395 0.605 33 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.443 -16.362 3.762 16.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.138 4.138 3 Si 0.743 3.257 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.561 4.561 8 H 0.095 0.905 9 C 0.150 3.850 10 H 0.087 0.913 11 C -0.093 4.093 12 Cl -0.211 7.211 13 O -0.157 6.157 14 C 0.221 3.779 15 N -0.196 5.196 16 C -0.032 4.032 17 C 0.462 3.538 18 F -0.132 7.132 19 F -0.156 7.156 20 F -0.155 7.155 21 C -0.217 4.217 22 C -0.036 4.036 23 C -0.215 4.215 24 C 0.350 3.650 25 N -0.424 5.424 26 O -0.373 6.373 27 H 0.082 0.918 28 H 0.153 0.847 29 H 0.090 0.910 30 H 0.164 0.836 31 H 0.166 0.834 32 H 0.224 0.776 33 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 1.967 -14.649 3.234 15.130 hybrid contribution 0.522 -0.336 0.177 0.645 sum 2.488 -14.985 3.411 15.569 Atomic orbital electron populations 1.69816 1.05918 1.28080 1.48434 1.24954 0.95170 0.99675 0.94030 0.86229 0.79273 0.80998 0.79166 1.19727 1.20864 1.19757 1.20967 0.94399 0.87691 1.53002 0.90463 1.20708 0.87205 0.81738 0.95309 0.91340 1.25641 0.95321 0.87029 1.01318 1.98631 1.75625 1.47884 1.98954 1.86594 1.43811 1.18556 1.66763 1.19864 0.85455 0.87620 0.84947 1.67256 1.15211 1.26280 1.10862 1.20785 0.93823 0.91653 0.96937 1.17985 0.85332 0.74561 0.75921 1.93315 1.82050 1.44974 1.92824 1.93214 1.96265 1.95550 1.30532 1.93206 1.79395 1.56477 1.86472 1.21341 0.95466 0.99288 1.05630 1.21389 0.94756 0.95874 0.91588 1.20093 0.97071 0.94739 1.09600 1.17746 0.84084 0.83556 0.79586 1.43688 1.19977 1.15864 1.62894 1.90963 1.74977 1.29219 1.42093 0.91790 0.84745 0.91032 0.83609 0.83425 0.77606 0.76503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.94 11.29 55.43 0.63 -23.32 16 2 C 0.07 1.72 5.29 -17.82 -0.09 1.63 16 3 Si 0.92 20.69 29.54 -169.99 -5.02 15.67 16 4 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16 5 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 6 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 7 C -0.52 -14.27 8.89 -34.44 -0.31 -14.58 16 8 H 0.08 2.15 7.81 -52.48 -0.41 1.74 16 9 C 0.21 5.26 2.25 -27.89 -0.06 5.20 16 10 H 0.07 1.89 6.98 -51.93 -0.36 1.53 16 11 C -0.03 -0.73 6.17 37.16 0.23 -0.51 16 12 Cl -0.24 -5.18 25.91 -51.86 -1.34 -6.52 16 13 O -0.25 -6.16 7.83 -39.73 -0.31 -6.47 16 14 C 0.40 8.21 6.66 -16.61 -0.11 8.10 16 15 N -0.47 -9.41 5.72 -9.21 -0.05 -9.47 16 16 C 0.11 1.80 6.27 -82.53 -0.52 1.28 16 17 C 0.52 8.04 3.31 36.01 0.12 8.16 16 18 F -0.15 -2.79 16.84 2.25 0.04 -2.76 16 19 F -0.17 -2.48 17.28 2.25 0.04 -2.44 16 20 F -0.17 -2.47 17.16 2.25 0.04 -2.43 16 21 C -0.20 -2.35 9.57 -39.50 -0.38 -2.73 16 22 C -0.01 -0.11 9.64 -38.89 -0.37 -0.49 16 23 C -0.21 -3.31 5.90 -104.69 -0.62 -3.93 16 24 C 0.57 8.90 8.04 -12.47 -0.10 8.80 16 25 N -0.86 -8.04 8.83 30.46 0.27 -7.78 16 26 O -0.50 -10.50 16.03 -16.48 -0.26 -10.76 16 27 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 28 H 0.13 3.47 5.95 -51.93 -0.31 3.16 16 29 H 0.07 1.69 8.14 -51.93 -0.42 1.27 16 30 H 0.15 1.24 8.06 -52.48 -0.42 0.81 16 31 H 0.15 0.86 6.52 -52.49 -0.34 0.51 16 32 H 0.40 2.20 6.93 -40.82 -0.28 1.92 16 33 H 0.40 3.23 8.93 -40.82 -0.36 2.86 16 LS Contribution 317.37 15.07 4.78 4.78 Total: -1.00 -31.90 317.37 -5.46 -37.37 By element: Atomic # 1 Polarization: 5.23 SS G_CDS: -2.05 Total: 3.18 kcal Atomic # 6 Polarization: 13.15 SS G_CDS: -2.21 Total: 10.93 kcal Atomic # 7 Polarization: -41.40 SS G_CDS: 0.84 Total: -40.56 kcal Atomic # 8 Polarization: -16.65 SS G_CDS: -0.58 Total: -17.23 kcal Atomic # 9 Polarization: -7.74 SS G_CDS: 0.12 Total: -7.62 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Atomic # 17 Polarization: -5.18 SS G_CDS: -1.34 Total: -6.52 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -31.90 -5.46 -37.37 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225997886.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -153.860 kcal (2) G-P(sol) polarization free energy of solvation -31.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -191.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds