Wall clock time and date at job start Tue Mar 31 2020 21:09:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00108 * 2 1 4 4 H 1.48504 * 109.46982 * 239.99898 * 3 2 1 5 5 H 1.48503 * 109.47106 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47380 * 120.00041 * 3 2 1 7 7 C 1.37875 * 119.99752 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99776 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00227 * 0.02562 * 7 2 1 10 10 H 1.09003 * 109.47287 * 299.99627 * 9 7 2 11 11 C 1.52995 * 109.47446 * 59.99491 * 9 7 2 12 12 Cl 1.80300 * 109.47447 * 185.00288 * 11 9 7 13 13 O 1.42904 * 109.47441 * 179.97438 * 9 7 2 14 14 C 1.35421 * 117.00143 * 149.99829 * 13 9 7 15 15 N 1.32241 * 119.80162 * 359.97438 * 14 13 9 16 16 C 1.31878 * 121.79764 * 180.02562 * 15 14 13 17 17 C 1.50703 * 119.40425 * 179.97438 * 16 15 14 18 18 F 1.39905 * 109.47157 * 5.00034 * 17 16 15 19 19 F 1.39900 * 109.47159 * 245.00334 * 17 16 15 20 20 F 1.39897 * 109.47274 * 125.00026 * 17 16 15 21 21 C 1.38351 * 121.18844 * 0.26080 * 16 15 14 22 22 C 1.38338 * 119.45767 * 359.50829 * 21 16 15 23 23 C 1.39981 * 118.34663 * 0.47901 * 22 21 16 24 24 C 1.47535 * 120.59504 * 179.72710 * 23 22 21 25 25 N 1.34778 * 119.99967 * 0.02562 * 24 23 22 26 26 O 1.21586 * 120.00166 * 180.02562 * 24 23 22 27 27 H 0.97002 * 120.00028 * 0.02562 * 1 2 3 28 28 H 1.08997 * 109.47340 * 305.00462 * 11 9 7 29 29 H 1.09002 * 109.47222 * 65.00187 * 11 9 7 30 30 H 1.08005 * 120.27294 * 179.74279 * 21 16 15 31 31 H 1.07999 * 120.82415 * 180.22275 * 22 21 16 32 32 H 0.96996 * 120.00079 * 0.02562 * 25 24 23 33 33 H 0.96991 * 119.99816 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 1 0.6240 -2.5567 0.8903 11 6 0.3717 -2.5804 -1.2489 12 17 -0.6388 -4.0719 -1.1767 13 8 2.1795 -3.5853 0.0005 14 6 1.7848 -4.7317 0.6039 15 7 0.5861 -4.8038 1.1576 16 6 0.1618 -5.8999 1.7557 17 6 -1.2144 -5.9225 2.3695 18 9 -1.8750 -4.7243 2.0775 19 9 -1.1041 -6.0681 3.7565 20 9 -1.9418 -6.9959 1.8443 21 6 0.9595 -7.0275 1.8349 22 6 2.2213 -7.0094 1.2681 23 6 2.6503 -5.8350 0.6386 24 6 3.9890 -5.7590 0.0231 25 7 4.8108 -6.8264 0.0633 26 8 4.3508 -4.7334 -0.5205 27 1 -0.4850 0.8401 -0.0004 28 1 -0.2757 -1.7048 -1.2953 29 1 1.0037 -2.6124 -2.1365 30 1 0.5986 -7.9160 2.3318 31 1 2.8610 -7.8783 1.3139 32 1 4.5220 -7.6448 0.4966 33 1 5.6907 -6.7765 -0.3417 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225997886.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:09:16 Heat of formation + Delta-G solvation = -214.470164 kcal Electronic energy + Delta-G solvation = -27937.447061 eV Core-core repulsion = 23188.016203 eV Total energy + Delta-G solvation = -4749.430858 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 338.043 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -51.20484 -48.73471 -48.64954 -42.04160 -39.96626 -39.21198 -36.58419 -35.42603 -35.07561 -33.45425 -32.59182 -31.04999 -28.14612 -27.30973 -25.01200 -24.45368 -22.87959 -22.02459 -20.15221 -19.61829 -19.59506 -19.01934 -18.76206 -18.33868 -17.79185 -16.89065 -16.79292 -16.49206 -15.84448 -15.62115 -15.56155 -15.46530 -15.25102 -15.11143 -15.01237 -14.81996 -14.80088 -14.70872 -14.32767 -14.01013 -13.82308 -13.52072 -13.24495 -13.01242 -12.84590 -12.55047 -12.17582 -11.70707 -11.33163 -11.28903 -11.19066 -10.87833 -10.80536 -10.62980 -10.49453 -9.56436 -8.37315 -6.54194 -0.71934 0.17452 1.33212 1.38182 1.40591 1.50440 1.60765 1.71496 2.13078 2.33456 2.46737 2.55082 2.57783 2.90558 2.95840 3.32962 3.60284 3.66126 3.82841 3.92753 4.18379 4.34187 4.41969 4.66813 4.70009 4.91207 5.18032 5.26162 5.51213 5.79773 5.94115 6.35361 6.44076 6.52833 6.72701 7.16968 7.38957 8.69230 Molecular weight = 338.04amu Principal moments of inertia in cm(-1) A = 0.010376 B = 0.005656 C = 0.004262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2697.824196 B = 4949.682154 C = 6567.539913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.027 3.973 3 Si 0.978 3.022 4 H -0.268 1.268 5 H -0.271 1.271 6 H -0.270 1.270 7 C -0.551 4.551 8 H 0.061 0.939 9 C 0.218 3.782 10 H 0.038 0.962 11 C -0.020 4.020 12 Cl -0.216 7.216 13 O -0.284 6.284 14 C 0.359 3.641 15 N -0.512 5.512 16 C 0.082 3.918 17 C 0.520 3.480 18 F -0.176 7.176 19 F -0.166 7.166 20 F -0.164 7.164 21 C -0.166 4.166 22 C 0.018 3.982 23 C -0.212 4.212 24 C 0.563 3.437 25 N -0.821 5.821 26 O -0.565 6.565 27 H 0.276 0.724 28 H 0.116 0.884 29 H 0.067 0.933 30 H 0.196 0.804 31 H 0.216 0.784 32 H 0.419 0.581 33 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.419 -19.527 4.636 20.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.174 4.174 3 Si 0.801 3.199 4 H -0.192 1.192 5 H -0.196 1.196 6 H -0.195 1.195 7 C -0.589 4.589 8 H 0.079 0.921 9 C 0.162 3.838 10 H 0.056 0.944 11 C -0.083 4.083 12 Cl -0.190 7.190 13 O -0.189 6.189 14 C 0.178 3.822 15 N -0.235 5.235 16 C -0.059 4.059 17 C 0.465 3.535 18 F -0.157 7.157 19 F -0.147 7.147 20 F -0.145 7.145 21 C -0.187 4.187 22 C -0.007 4.007 23 C -0.219 4.219 24 C 0.348 3.652 25 N -0.388 5.388 26 O -0.444 6.444 27 H 0.086 0.914 28 H 0.134 0.866 29 H 0.086 0.914 30 H 0.213 0.787 31 H 0.232 0.768 32 H 0.252 0.748 33 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 2.933 -17.930 4.147 18.636 hybrid contribution 0.193 0.340 0.013 0.391 sum 3.126 -17.590 4.159 18.343 Atomic orbital electron populations 1.69913 1.07057 1.29008 1.48400 1.25740 0.95969 1.02592 0.93117 0.85295 0.78244 0.77133 0.79189 1.19243 1.19565 1.19523 1.21175 0.93885 0.89522 1.54296 0.92102 1.20204 0.87041 0.82316 0.94189 0.94436 1.25255 0.95017 0.87284 1.00736 1.98615 1.74897 1.46461 1.98980 1.86518 1.43738 1.19634 1.68964 1.20244 0.87071 0.87750 0.87098 1.67015 1.15705 1.28566 1.12193 1.21142 0.94553 0.92392 0.97854 1.17993 0.85259 0.73971 0.76296 1.93262 1.82600 1.46735 1.93091 1.93226 1.96216 1.95437 1.29829 1.93221 1.79215 1.55705 1.86389 1.21959 0.94680 0.98939 1.03104 1.22114 0.94844 0.95629 0.88143 1.20393 0.96706 0.95010 1.09814 1.17874 0.84491 0.83909 0.78953 1.43342 1.19370 1.14922 1.61177 1.90945 1.76195 1.32058 1.45159 0.91448 0.86635 0.91417 0.78727 0.76767 0.74797 0.75203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.86 11.29 21.45 0.24 -50.62 16 2 C 0.03 1.49 5.29 84.65 0.45 1.94 16 3 Si 0.98 43.41 29.54 68.60 2.03 45.44 16 4 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 5 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 6 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 7 C -0.55 -31.87 8.89 25.60 0.23 -31.64 16 8 H 0.06 3.61 7.81 -2.91 -0.02 3.59 16 9 C 0.22 11.91 2.25 29.84 0.07 11.98 16 10 H 0.04 2.24 6.98 -2.39 -0.02 2.22 16 11 C -0.02 -1.01 6.17 71.98 0.44 -0.57 16 12 Cl -0.22 -9.73 25.91 -2.72 -0.07 -9.80 16 13 O -0.28 -14.56 7.83 -66.35 -0.52 -15.08 16 14 C 0.36 14.98 6.66 85.13 0.57 15.55 16 15 N -0.51 -20.71 5.72 -296.06 -1.69 -22.40 16 16 C 0.08 2.51 6.27 42.58 0.27 2.78 16 17 C 0.52 15.60 3.31 71.24 0.24 15.83 16 18 F -0.18 -6.67 16.84 44.97 0.76 -5.92 16 19 F -0.17 -4.44 17.28 44.97 0.78 -3.66 16 20 F -0.16 -4.30 17.16 44.97 0.77 -3.52 16 21 C -0.17 -3.21 9.57 22.32 0.21 -2.99 16 22 C 0.02 0.31 9.64 22.72 0.22 0.53 16 23 C -0.21 -6.40 5.90 -19.91 -0.12 -6.52 16 24 C 0.56 16.94 8.04 86.70 0.70 17.64 16 25 N -0.82 -12.30 8.83 -175.82 -1.55 -13.86 16 26 O -0.57 -24.41 16.03 16.83 0.27 -24.14 16 27 H 0.28 14.50 8.31 -92.71 -0.77 13.73 16 28 H 0.12 6.31 5.95 -2.39 -0.01 6.29 16 29 H 0.07 3.41 8.14 -2.39 -0.02 3.40 16 30 H 0.20 1.91 8.06 -2.91 -0.02 1.88 16 31 H 0.22 0.68 6.52 -2.91 -0.02 0.66 16 32 H 0.42 2.17 6.93 -92.71 -0.64 1.53 16 33 H 0.42 5.26 8.93 -92.71 -0.83 4.43 16 Total: -1.00 -78.06 317.37 4.04 -74.02 By element: Atomic # 1 Polarization: 5.27 SS G_CDS: -0.24 Total: 5.03 kcal Atomic # 6 Polarization: 21.24 SS G_CDS: 3.27 Total: 24.50 kcal Atomic # 7 Polarization: -83.87 SS G_CDS: -3.00 Total: -86.87 kcal Atomic # 8 Polarization: -38.97 SS G_CDS: -0.25 Total: -39.22 kcal Atomic # 9 Polarization: -15.41 SS G_CDS: 2.31 Total: -13.10 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.44 kcal Atomic # 17 Polarization: -9.73 SS G_CDS: -0.07 Total: -9.80 kcal Total: -78.06 4.04 -74.02 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225997886.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -140.449 kcal (2) G-P(sol) polarization free energy of solvation -78.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -218.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -214.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds