Wall clock time and date at job start Tue Mar 31 2020 21:40:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46900 * 109.47081 * 2 1 4 4 C 1.46891 * 111.00092 * 298.48692 * 3 2 1 5 5 C 1.50702 * 109.47398 * 293.09875 * 4 3 2 6 6 H 1.08009 * 119.99400 * 354.95524 * 5 4 3 7 7 C 1.37871 * 120.00274 * 174.95325 * 5 4 3 8 8 N 1.31514 * 120.00218 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99894 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47107 * 60.00050 * 9 7 5 11 11 H 1.48501 * 109.46885 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.47002 * 299.99957 * 9 7 5 13 13 C 1.46904 * 110.99851 * 62.44278 * 3 2 1 14 14 C 1.50698 * 109.47600 * 66.04602 * 13 3 2 15 15 C 1.34342 * 126.51232 * 259.97861 * 14 13 3 16 16 N 1.36749 * 109.96390 * 180.02562 * 15 14 13 17 17 H 0.96997 * 125.02462 * 180.02562 * 16 15 14 18 18 C 1.37425 * 109.94471 * 359.97438 * 16 15 14 19 19 N 1.32632 * 133.41180 * 180.02562 * 18 16 15 20 20 C 1.31947 * 119.92093 * 179.97438 * 19 18 16 21 21 C 1.38859 * 120.63151 * 0.02562 * 20 19 18 22 22 Br 1.89098 * 119.83079 * 180.02562 * 21 20 19 23 23 N 1.31984 * 120.34588 * 0.02562 * 21 20 19 24 24 C 1.32982 * 119.63815 * 359.97438 * 23 21 20 25 25 H 1.08996 * 109.47451 * 299.90557 * 1 2 3 26 26 H 1.09000 * 109.46868 * 59.90949 * 1 2 3 27 27 H 1.09004 * 109.47054 * 179.90483 * 1 2 3 28 28 H 1.08999 * 109.47656 * 239.99694 * 2 1 3 29 29 H 1.09002 * 109.46817 * 119.99673 * 2 1 3 30 30 H 1.09008 * 109.47098 * 53.09867 * 4 3 2 31 31 H 1.08999 * 109.47262 * 173.09645 * 4 3 2 32 32 H 0.97000 * 120.00158 * 179.97438 * 8 7 5 33 33 H 1.09000 * 109.47040 * 306.04296 * 13 3 2 34 34 H 1.09001 * 109.47175 * 186.04950 * 13 3 2 35 35 H 1.08001 * 125.01966 * 0.05879 * 15 14 13 36 36 H 1.07999 * 119.68354 * 180.27848 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.5784 2.0993 -1.2053 5 6 2.2472 1.5019 -2.4165 6 1 2.9924 0.7294 -2.2958 7 6 1.9078 1.9414 -3.6784 8 7 1.0008 2.8823 -3.8253 9 14 2.7374 1.2013 -5.1796 10 1 2.4694 -0.2586 -5.2240 11 1 2.2008 1.8411 -6.4076 12 1 4.2021 1.4335 -5.1007 13 6 1.5969 2.0928 1.2159 14 6 2.2679 1.4754 2.4157 15 6 1.7218 0.5971 3.2731 16 7 2.6306 0.2591 4.2373 17 1 2.4654 -0.3599 4.9656 18 6 3.8130 0.9254 4.0212 19 7 4.9777 0.9441 4.6553 20 6 5.9602 1.7010 4.2049 21 6 5.7882 2.4822 3.0698 22 35 7.2118 3.5579 2.4437 23 7 4.6363 2.4778 2.4256 24 6 3.6378 1.7195 2.8689 25 1 -0.3634 0.5123 0.8908 26 1 -0.3633 0.5152 -0.8892 27 1 -0.3633 -1.0277 -0.0017 28 1 1.8934 -0.5139 -0.8899 29 1 1.8932 -0.5138 0.8900 30 1 0.4968 2.0088 -1.3058 31 1 1.8488 3.1521 -1.1232 32 1 0.7623 3.1917 -4.7132 33 1 0.5151 2.0146 1.3243 34 1 1.8795 3.1429 1.1418 35 1 0.7139 0.2140 3.2099 36 1 6.9085 1.7099 4.7216 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237849344.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:40:13 Heat of formation + Delta-G solvation = 97.693256 kcal Electronic energy + Delta-G solvation = -20970.656850 eV Core-core repulsion = 17730.317314 eV Total energy + Delta-G solvation = -3240.339536 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 338.044 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.06769 -38.81072 -37.11831 -34.54125 -32.62952 -31.97154 -30.97545 -29.33900 -29.07194 -27.04528 -24.86577 -24.42141 -23.29855 -22.97760 -20.21912 -19.25340 -18.41736 -17.43258 -16.41876 -16.10909 -15.80421 -15.24460 -14.88435 -14.79789 -14.07751 -13.78843 -13.41340 -13.25647 -12.90341 -12.78463 -11.96269 -11.74515 -11.69560 -11.65990 -11.37925 -11.03850 -10.87965 -10.67912 -10.66501 -10.50296 -10.46004 -10.04670 -9.72913 -9.20432 -9.04382 -8.63339 -8.37393 -8.26016 -7.08382 -5.95869 -3.96007 0.68474 0.80107 1.27938 2.44434 2.49373 3.37957 3.41798 3.45673 3.63011 4.01895 4.12718 4.26913 4.49406 4.77309 4.96469 5.11678 5.27607 5.37270 5.39755 5.75533 5.83314 5.92173 6.00315 6.03367 6.19587 6.39366 6.45288 6.63016 6.72670 6.85742 6.92460 7.29037 7.39478 7.48024 7.65810 7.88491 8.18450 8.28041 8.63381 9.11564 9.67599 11.14690 Molecular weight = 338.04amu Principal moments of inertia in cm(-1) A = 0.011013 B = 0.004174 C = 0.003200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2541.858187 B = 6706.316869 C = 8748.912015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.061 3.939 3 N -0.526 5.526 4 C 0.191 3.809 5 C -0.501 4.501 6 H 0.061 0.939 7 C 0.056 3.944 8 N -0.900 5.900 9 Si 0.895 3.105 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.276 1.276 13 C 0.119 3.881 14 C -0.107 4.107 15 C 0.072 3.928 16 N -0.571 5.571 17 H 0.423 0.577 18 C 0.245 3.755 19 N -0.446 5.446 20 C 0.114 3.886 21 C 0.052 3.948 22 Br 0.004 6.996 23 N -0.354 5.354 24 C 0.084 3.916 25 H 0.043 0.957 26 H 0.070 0.930 27 H 0.045 0.955 28 H 0.079 0.921 29 H 0.048 0.952 30 H 0.003 0.997 31 H 0.026 0.974 32 H 0.260 0.740 33 H 0.041 0.959 34 H 0.081 0.919 35 H 0.187 0.813 36 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.245 -2.948 19.634 20.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.067 4.067 3 N -0.249 5.249 4 C 0.066 3.934 5 C -0.540 4.540 6 H 0.079 0.921 7 C -0.145 4.145 8 N -0.540 5.540 9 Si 0.723 3.277 10 H -0.204 1.204 11 H -0.214 1.214 12 H -0.202 1.202 13 C -0.009 4.009 14 C -0.115 4.115 15 C -0.057 4.057 16 N -0.178 5.178 17 H 0.261 0.739 18 C 0.005 3.995 19 N -0.165 5.165 20 C -0.057 4.057 21 C -0.176 4.176 22 Br 0.086 6.914 23 N -0.069 5.069 24 C -0.057 4.057 25 H 0.062 0.938 26 H 0.089 0.911 27 H 0.064 0.936 28 H 0.097 0.903 29 H 0.066 0.934 30 H 0.021 0.979 31 H 0.044 0.956 32 H 0.070 0.930 33 H 0.058 0.942 34 H 0.099 0.901 35 H 0.204 0.796 36 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 7.034 -2.553 19.295 20.695 hybrid contribution -0.820 -0.890 -0.445 1.290 sum 6.214 -3.444 18.850 20.144 Atomic orbital electron populations 1.22404 0.99545 1.00814 1.02037 1.21946 0.91840 0.91782 1.01147 1.62301 1.59294 1.01648 1.01688 1.19777 0.94487 0.93767 0.85366 1.21098 1.21834 1.21030 0.90008 0.92120 1.24944 0.95306 0.95294 0.98944 1.69943 1.32030 1.29073 1.22956 0.86615 0.79931 0.79160 0.82027 1.20404 1.21433 1.20200 1.20438 0.95314 0.98066 0.87122 1.20345 0.90601 1.01441 0.99139 1.21888 0.95465 0.98855 0.89457 1.41347 1.08670 1.40367 1.27395 0.73853 1.19259 0.88565 0.96351 0.95305 1.67322 0.98293 1.20281 1.30610 1.23329 0.97628 0.91445 0.93251 1.23651 0.95058 1.01882 0.97052 1.96783 1.38053 1.66971 1.89580 1.67615 0.97500 1.15480 1.26314 1.20536 0.94871 0.96409 0.93923 0.93812 0.91088 0.93571 0.90286 0.93369 0.97899 0.95594 0.92998 0.94156 0.90095 0.79584 0.80275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.14 9.26 37.15 0.34 -2.79 16 2 C 0.06 1.15 5.70 -3.83 -0.02 1.13 16 3 N -0.53 -11.19 4.69 -237.52 -1.11 -12.31 16 4 C 0.19 4.89 4.52 -4.98 -0.02 4.87 16 5 C -0.50 -14.10 8.40 -34.44 -0.29 -14.39 16 6 H 0.06 1.72 7.36 -52.48 -0.39 1.34 16 7 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 8 N -0.90 -26.71 13.29 55.43 0.74 -25.97 16 9 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 11 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 12 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 13 C 0.12 2.11 5.29 -4.97 -0.03 2.08 16 14 C -0.11 -1.63 4.92 -102.74 -0.51 -2.14 16 15 C 0.07 0.78 10.99 -16.73 -0.18 0.60 16 16 N -0.57 -5.91 6.05 -12.10 -0.07 -5.99 16 17 H 0.42 2.88 8.96 -40.82 -0.37 2.51 16 18 C 0.24 3.42 8.42 -155.61 -1.31 2.11 16 19 N -0.45 -5.99 10.52 -12.09 -0.13 -6.12 16 20 C 0.11 1.40 10.93 -17.27 -0.19 1.22 16 21 C 0.05 0.76 7.17 -17.26 -0.12 0.63 16 22 Br 0.00 0.05 33.88 -68.01 -2.30 -2.26 16 23 N -0.35 -6.30 10.51 -8.13 -0.09 -6.39 16 24 C 0.08 1.39 7.49 -83.05 -0.62 0.77 16 25 H 0.04 0.62 6.33 -51.93 -0.33 0.30 16 26 H 0.07 1.41 6.29 -51.93 -0.33 1.09 16 27 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.08 1.67 6.98 -51.93 -0.36 1.30 16 29 H 0.05 0.80 6.64 -51.93 -0.34 0.45 16 30 H 0.00 0.09 6.01 -51.92 -0.31 -0.22 16 31 H 0.03 0.73 7.91 -51.93 -0.41 0.31 16 32 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 33 H 0.04 0.64 6.08 -51.93 -0.32 0.33 16 34 H 0.08 1.55 7.92 -51.93 -0.41 1.14 16 35 H 0.19 1.38 8.06 -52.49 -0.42 0.95 16 36 H 0.18 1.52 8.06 -52.49 -0.42 1.09 16 LS Contribution 321.41 15.07 4.84 4.84 Total: -1.00 -32.93 321.41 -10.16 -43.09 By element: Atomic # 1 Polarization: 2.56 SS G_CDS: -3.97 Total: -1.41 kcal Atomic # 6 Polarization: -1.38 SS G_CDS: -3.05 Total: -4.43 kcal Atomic # 7 Polarization: -56.11 SS G_CDS: -0.66 Total: -56.77 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Atomic # 35 Polarization: 0.05 SS G_CDS: -2.30 Total: -2.26 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -32.93 -10.16 -43.09 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237849344.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.781 kcal (2) G-P(sol) polarization free energy of solvation -32.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.088 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds