Wall clock time and date at job start Tue Mar 31 2020 21:40:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46900 * 109.47081 * 2 1 4 4 C 1.46891 * 111.00092 * 298.48692 * 3 2 1 5 5 C 1.50702 * 109.47398 * 293.09875 * 4 3 2 6 6 H 1.08009 * 119.99400 * 354.95524 * 5 4 3 7 7 C 1.37871 * 120.00274 * 174.95325 * 5 4 3 8 8 N 1.31514 * 120.00218 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99894 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47107 * 60.00050 * 9 7 5 11 11 H 1.48501 * 109.46885 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.47002 * 299.99957 * 9 7 5 13 13 C 1.46904 * 110.99851 * 62.44278 * 3 2 1 14 14 C 1.50698 * 109.47600 * 66.04602 * 13 3 2 15 15 C 1.34342 * 126.51232 * 259.97861 * 14 13 3 16 16 N 1.36749 * 109.96390 * 180.02562 * 15 14 13 17 17 H 0.96997 * 125.02462 * 180.02562 * 16 15 14 18 18 C 1.37425 * 109.94471 * 359.97438 * 16 15 14 19 19 N 1.32632 * 133.41180 * 180.02562 * 18 16 15 20 20 C 1.31947 * 119.92093 * 179.97438 * 19 18 16 21 21 C 1.38859 * 120.63151 * 0.02562 * 20 19 18 22 22 Br 1.89098 * 119.83079 * 180.02562 * 21 20 19 23 23 N 1.31984 * 120.34588 * 0.02562 * 21 20 19 24 24 C 1.32982 * 119.63815 * 359.97438 * 23 21 20 25 25 H 1.08996 * 109.47451 * 299.90557 * 1 2 3 26 26 H 1.09000 * 109.46868 * 59.90949 * 1 2 3 27 27 H 1.09004 * 109.47054 * 179.90483 * 1 2 3 28 28 H 1.08999 * 109.47656 * 239.99694 * 2 1 3 29 29 H 1.09002 * 109.46817 * 119.99673 * 2 1 3 30 30 H 1.09008 * 109.47098 * 53.09867 * 4 3 2 31 31 H 1.08999 * 109.47262 * 173.09645 * 4 3 2 32 32 H 0.97000 * 120.00158 * 179.97438 * 8 7 5 33 33 H 1.09000 * 109.47040 * 306.04296 * 13 3 2 34 34 H 1.09001 * 109.47175 * 186.04950 * 13 3 2 35 35 H 1.08001 * 125.01966 * 0.05879 * 15 14 13 36 36 H 1.07999 * 119.68354 * 180.27848 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.5784 2.0993 -1.2053 5 6 2.2472 1.5019 -2.4165 6 1 2.9924 0.7294 -2.2958 7 6 1.9078 1.9414 -3.6784 8 7 1.0008 2.8823 -3.8253 9 14 2.7374 1.2013 -5.1796 10 1 2.4694 -0.2586 -5.2240 11 1 2.2008 1.8411 -6.4076 12 1 4.2021 1.4335 -5.1007 13 6 1.5969 2.0928 1.2159 14 6 2.2679 1.4754 2.4157 15 6 1.7218 0.5971 3.2731 16 7 2.6306 0.2591 4.2373 17 1 2.4654 -0.3599 4.9656 18 6 3.8130 0.9254 4.0212 19 7 4.9777 0.9441 4.6553 20 6 5.9602 1.7010 4.2049 21 6 5.7882 2.4822 3.0698 22 35 7.2118 3.5579 2.4437 23 7 4.6363 2.4778 2.4256 24 6 3.6378 1.7195 2.8689 25 1 -0.3634 0.5123 0.8908 26 1 -0.3633 0.5152 -0.8892 27 1 -0.3633 -1.0277 -0.0017 28 1 1.8934 -0.5139 -0.8899 29 1 1.8932 -0.5138 0.8900 30 1 0.4968 2.0088 -1.3058 31 1 1.8488 3.1521 -1.1232 32 1 0.7623 3.1917 -4.7132 33 1 0.5151 2.0146 1.3243 34 1 1.8795 3.1429 1.1418 35 1 0.7139 0.2140 3.2099 36 1 6.9085 1.7099 4.7216 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001237849344.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:40:13 Heat of formation + Delta-G solvation = 73.961755 kcal Electronic energy + Delta-G solvation = -20971.685926 eV Core-core repulsion = 17730.317314 eV Total energy + Delta-G solvation = -3241.368611 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 338.044 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.08667 -39.87986 -38.65494 -35.64073 -34.71715 -33.03342 -32.18244 -30.92777 -30.09651 -28.79494 -26.25697 -25.57401 -24.88898 -24.28469 -21.68928 -20.40515 -19.58342 -18.43572 -18.29793 -17.47086 -16.98182 -16.66006 -16.29952 -16.20968 -15.80696 -14.89744 -14.71590 -14.50146 -14.27207 -13.95761 -13.81643 -13.17990 -13.08505 -12.89648 -12.78449 -12.65121 -12.57289 -12.41860 -12.34272 -11.82434 -11.73644 -11.53414 -11.41790 -11.25633 -10.55836 -10.13587 -9.64666 -9.32813 -8.74483 -8.14720 -6.23672 -0.32572 -0.26864 0.23559 1.39628 1.42905 1.44020 1.51090 1.56722 2.42574 2.55410 3.01477 3.14818 3.16906 3.31466 3.60364 3.77756 4.04585 4.23382 4.30057 4.38546 4.55828 4.64055 4.77276 4.81399 4.87192 5.06972 5.09306 5.20220 5.30744 5.45552 5.58299 5.59422 5.72960 5.92289 6.15240 6.38158 6.49437 6.65404 6.78609 6.93440 7.45152 8.94776 Molecular weight = 338.04amu Principal moments of inertia in cm(-1) A = 0.011013 B = 0.004174 C = 0.003200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2541.858187 B = 6706.316869 C = 8748.912015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.065 3.935 3 N -0.543 5.543 4 C 0.209 3.791 5 C -0.516 4.516 6 H 0.052 0.948 7 C 0.005 3.995 8 N -0.932 5.932 9 Si 0.960 3.040 10 H -0.267 1.267 11 H -0.281 1.281 12 H -0.275 1.275 13 C 0.130 3.870 14 C -0.158 4.158 15 C 0.122 3.878 16 N -0.547 5.547 17 H 0.445 0.555 18 C 0.237 3.763 19 N -0.445 5.445 20 C 0.120 3.880 21 C 0.040 3.960 22 Br 0.011 6.989 23 N -0.406 5.406 24 C 0.053 3.947 25 H 0.071 0.929 26 H 0.029 0.971 27 H 0.074 0.926 28 H 0.047 0.953 29 H 0.078 0.922 30 H -0.012 1.012 31 H -0.012 1.012 32 H 0.263 0.737 33 H 0.060 0.940 34 H 0.049 0.951 35 H 0.235 0.765 36 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.015 -5.262 21.580 23.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.063 4.063 3 N -0.267 5.267 4 C 0.083 3.917 5 C -0.555 4.555 6 H 0.071 0.929 7 C -0.193 4.193 8 N -0.573 5.573 9 Si 0.785 3.215 10 H -0.191 1.191 11 H -0.206 1.206 12 H -0.201 1.201 13 C 0.002 3.998 14 C -0.165 4.165 15 C -0.008 4.008 16 N -0.156 5.156 17 H 0.287 0.713 18 C -0.003 4.003 19 N -0.163 5.163 20 C -0.050 4.050 21 C -0.188 4.188 22 Br 0.094 6.906 23 N -0.122 5.122 24 C -0.088 4.088 25 H 0.090 0.910 26 H 0.048 0.952 27 H 0.093 0.907 28 H 0.066 0.934 29 H 0.096 0.904 30 H 0.006 0.994 31 H 0.006 0.994 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.067 0.933 35 H 0.251 0.749 36 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 6.807 -4.900 21.292 22.884 hybrid contribution -0.725 -0.160 -0.950 1.205 sum 6.083 -5.060 20.342 21.826 Atomic orbital electron populations 1.22277 0.97608 1.02427 1.01373 1.21911 0.93408 0.89973 1.00988 1.62133 1.60264 1.02835 1.01438 1.19348 0.93190 0.92007 0.87161 1.21377 1.21783 1.20892 0.91405 0.92942 1.25785 0.95857 0.95623 1.01986 1.70063 1.33283 1.30249 1.23726 0.85577 0.78673 0.78879 0.78332 1.19147 1.20643 1.20065 1.20216 0.96568 0.96306 0.86696 1.20105 0.91079 1.05084 1.00268 1.22455 0.96332 0.95224 0.86826 1.41367 1.07171 1.39537 1.27509 0.71264 1.19377 0.89644 0.96512 0.94778 1.67456 0.98271 1.20293 1.30312 1.23888 0.98669 0.90105 0.92373 1.24009 0.94653 1.02417 0.97700 1.96764 1.37183 1.66932 1.89744 1.67526 0.99012 1.17316 1.28321 1.20899 0.95292 0.97231 0.95333 0.90980 0.95180 0.90718 0.93441 0.90376 0.99433 0.99407 0.92828 0.92209 0.93286 0.74905 0.76596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.59 9.26 71.98 0.67 -4.93 16 2 C 0.07 2.39 5.70 86.30 0.49 2.88 16 3 N -0.54 -23.72 4.69 -905.38 -4.24 -27.97 16 4 C 0.21 11.30 4.52 85.56 0.39 11.69 16 5 C -0.52 -30.17 8.40 25.60 0.22 -29.95 16 6 H 0.05 3.08 7.36 -2.91 -0.02 3.06 16 7 C 0.01 0.31 5.46 84.65 0.46 0.77 16 8 N -0.93 -56.97 13.29 21.44 0.28 -56.69 16 9 Si 0.96 45.71 29.54 68.60 2.03 47.74 16 10 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 11 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 12 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 13 C 0.13 4.66 5.29 85.56 0.45 5.11 16 14 C -0.16 -4.58 4.92 -18.64 -0.09 -4.67 16 15 C 0.12 2.16 10.99 83.04 0.91 3.07 16 16 N -0.55 -9.15 6.05 -192.19 -1.16 -10.32 16 17 H 0.44 3.86 8.96 -92.71 -0.83 3.03 16 18 C 0.24 6.10 8.42 134.00 1.13 7.23 16 19 N -0.44 -10.97 10.52 -192.15 -2.02 -12.99 16 20 C 0.12 2.77 10.93 84.82 0.93 3.70 16 21 C 0.04 1.17 7.17 84.82 0.61 1.77 16 22 Br 0.01 0.29 33.88 -20.37 -0.69 -0.40 16 23 N -0.41 -14.81 10.51 -179.64 -1.89 -16.69 16 24 C 0.05 1.74 7.49 41.77 0.31 2.05 16 25 H 0.07 1.82 6.33 -2.39 -0.02 1.81 16 26 H 0.03 1.19 6.29 -2.39 -0.02 1.17 16 27 H 0.07 1.91 8.14 -2.38 -0.02 1.89 16 28 H 0.05 2.02 6.98 -2.39 -0.02 2.00 16 29 H 0.08 2.38 6.64 -2.39 -0.02 2.37 16 30 H -0.01 -0.67 6.01 -2.38 -0.01 -0.68 16 31 H -0.01 -0.73 7.91 -2.39 -0.02 -0.75 16 32 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 33 H 0.06 1.85 6.08 -2.39 -0.01 1.83 16 34 H 0.05 2.01 7.92 -2.39 -0.02 1.99 16 35 H 0.23 1.88 8.06 -2.91 -0.02 1.86 16 36 H 0.22 3.11 8.06 -2.91 -0.02 3.09 16 Total: -1.00 -76.53 321.41 -0.92 -77.44 By element: Atomic # 1 Polarization: 0.84 SS G_CDS: 0.30 Total: 1.14 kcal Atomic # 6 Polarization: -7.74 SS G_CDS: 6.47 Total: -1.27 kcal Atomic # 7 Polarization: -115.62 SS G_CDS: -9.03 Total: -124.65 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.74 kcal Atomic # 35 Polarization: 0.29 SS G_CDS: -0.69 Total: -0.40 kcal Total: -76.53 -0.92 -77.44 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237849344.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.407 kcal (2) G-P(sol) polarization free energy of solvation -76.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.445 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds