Wall clock time and date at job start Tue Mar 31 2020 20:29:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38485 * 120.45662 * 2 1 4 4 C 1.38784 * 118.49188 * 179.97438 * 3 2 1 5 5 Br 1.89095 * 120.33660 * 179.97438 * 4 3 2 6 6 C 1.38471 * 119.32443 * 359.97438 * 4 3 2 7 7 N 1.31668 * 120.87055 * 0.02562 * 6 4 3 8 8 C 1.32638 * 121.64216 * 359.97438 * 7 6 4 9 9 C 1.48466 * 119.70969 * 180.02562 * 8 7 6 10 10 N 1.30733 * 126.41338 * 180.02562 * 9 8 7 11 11 O 1.21290 * 110.10281 * 179.97438 * 10 9 8 12 12 C 1.33675 * 110.02160 * 0.02562 * 11 10 9 13 13 C 1.50697 * 126.44048 * 180.02562 * 12 11 10 14 14 H 1.09001 * 109.47372 * 194.97572 * 13 12 11 15 15 N 1.46908 * 109.47110 * 314.97602 * 13 12 11 16 16 C 1.50701 * 109.47081 * 74.97554 * 13 12 11 17 17 H 1.07996 * 119.99773 * 359.97438 * 16 13 12 18 18 C 1.37880 * 120.00059 * 180.02562 * 16 13 12 19 19 N 1.31514 * 119.99897 * 359.97438 * 18 16 13 20 20 Si 1.86796 * 120.00034 * 180.02562 * 18 16 13 21 21 H 1.48510 * 109.46909 * 89.99655 * 20 18 16 22 22 H 1.48501 * 109.47164 * 209.99878 * 20 18 16 23 23 H 1.48501 * 109.47262 * 330.00080 * 20 18 16 24 24 N 1.30967 * 107.11619 * 359.74662 * 12 11 10 25 25 H 1.08999 * 109.47337 * 89.99776 * 1 2 3 26 26 H 1.08998 * 109.47192 * 209.99957 * 1 2 3 27 27 H 1.09003 * 109.46877 * 329.99653 * 1 2 3 28 28 H 1.07999 * 120.75556 * 359.70550 * 3 2 1 29 29 H 1.07997 * 119.55908 * 179.97438 * 6 4 3 30 30 H 1.00896 * 110.99885 * 296.04291 * 15 13 12 31 31 H 1.00903 * 110.99673 * 60.00395 * 15 13 12 32 32 H 0.97000 * 119.99997 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2090 1.1938 0.0000 4 6 3.5960 1.1462 0.0005 5 35 4.6065 2.7445 -0.0002 6 6 4.2324 -0.0836 0.0016 7 7 3.5391 -1.2030 0.0016 8 6 2.2128 -1.2001 0.0011 9 6 1.4741 -2.4879 0.0017 10 7 0.1754 -2.6377 0.0008 11 8 -0.1083 -3.8169 0.0011 12 6 1.0057 -4.5557 0.0028 13 6 1.0818 -6.0607 0.0032 14 1 2.0912 -6.3735 0.2703 15 7 0.1274 -6.5990 0.9818 16 6 0.7412 -6.5812 -1.3694 17 1 0.4940 -5.8912 -2.1625 18 6 0.7442 -7.9385 -1.6124 19 7 1.0447 -8.7787 -0.6463 20 14 0.3227 -8.5836 -3.3139 21 1 1.5624 -8.6870 -4.1252 22 1 -0.3036 -9.9247 -3.1937 23 1 -0.6256 -7.6520 -3.9758 24 7 2.0187 -3.7255 -0.0020 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5139 28 1 1.6889 2.1403 -0.0048 29 1 5.3115 -0.1251 0.0016 30 1 0.3724 -6.3166 1.9189 31 1 -0.8165 -6.3228 0.7560 32 1 1.0465 -9.7336 -0.8171 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001248224437.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:35 Heat of formation + Delta-G solvation = 94.459338 kcal Electronic energy + Delta-G solvation = -20267.548820 eV Core-core repulsion = 16891.235956 eV Total energy + Delta-G solvation = -3376.312864 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 338.012 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -46.53168 -41.62055 -37.23475 -36.76645 -35.18634 -34.44582 -33.72521 -32.32950 -30.72777 -28.84561 -28.38590 -26.22651 -25.48278 -23.96326 -23.49342 -21.96859 -19.40930 -19.02787 -18.36538 -18.11942 -17.47139 -16.72264 -16.39985 -16.15807 -15.87555 -15.54999 -15.10337 -14.64864 -14.40697 -14.22516 -13.92039 -13.54659 -13.23714 -13.20289 -12.91323 -12.74253 -12.67636 -12.35083 -12.15393 -11.94169 -11.66947 -11.57880 -10.96966 -10.79295 -10.76300 -10.62524 -9.89215 -9.39474 -8.10439 -6.34604 -0.87554 -0.09728 0.22772 0.26381 1.22383 1.47086 1.48909 1.57896 1.84125 2.14259 2.41678 2.44487 2.77161 3.17191 3.34586 3.53857 3.58349 3.68802 3.94996 4.18305 4.22675 4.31458 4.59292 4.63652 4.67135 4.81969 4.92059 5.03420 5.09384 5.36520 5.62427 5.83889 6.38537 6.51955 6.81386 6.97462 7.10109 7.38535 8.94240 Molecular weight = 338.01amu Principal moments of inertia in cm(-1) A = 0.027055 B = 0.002514 C = 0.002439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.672651 B =11137.074350 C =11475.497341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.090 4.090 3 C -0.038 4.038 4 C -0.128 4.128 5 Br -0.002 7.002 6 C 0.125 3.875 7 N -0.470 5.470 8 C 0.180 3.820 9 C 0.196 3.804 10 N -0.371 5.371 11 O 0.065 5.935 12 C 0.198 3.802 13 C 0.319 3.681 14 H 0.061 0.939 15 N -0.801 5.801 16 C -0.560 4.560 17 H 0.048 0.952 18 C 0.050 3.950 19 N -0.867 5.867 20 Si 0.957 3.043 21 H -0.277 1.277 22 H -0.276 1.276 23 H -0.271 1.271 24 N -0.499 5.499 25 H 0.084 0.916 26 H 0.078 0.922 27 H 0.107 0.893 28 H 0.189 0.811 29 H 0.192 0.808 30 H 0.323 0.677 31 H 0.338 0.662 32 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.206 25.320 2.765 25.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.095 4.095 3 C -0.065 4.065 4 C -0.211 4.211 5 Br 0.083 6.917 6 C -0.037 4.037 7 N -0.179 5.179 8 C 0.044 3.956 9 C -0.074 4.074 10 N -0.084 5.084 11 O 0.010 5.990 12 C -0.024 4.024 13 C 0.205 3.795 14 H 0.079 0.921 15 N -0.329 5.329 16 C -0.599 4.599 17 H 0.066 0.934 18 C -0.157 4.157 19 N -0.501 5.501 20 Si 0.782 3.218 21 H -0.203 1.203 22 H -0.201 1.201 23 H -0.196 1.196 24 N -0.233 5.233 25 H 0.102 0.898 26 H 0.097 0.903 27 H 0.125 0.875 28 H 0.206 0.794 29 H 0.209 0.791 30 H 0.135 0.865 31 H 0.151 0.849 32 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 4.137 24.883 2.608 25.359 hybrid contribution -0.788 0.455 -0.613 1.097 sum 3.349 25.338 1.995 25.636 Atomic orbital electron populations 1.21160 0.87463 1.05286 1.04133 1.21070 0.99384 0.91223 0.97858 1.21800 0.91644 0.99214 0.93803 1.23297 0.96171 0.94561 1.07034 1.96801 1.70664 1.26858 1.97366 1.23253 1.01604 0.84941 0.93924 1.67552 1.07168 1.32000 1.11197 1.18112 0.89296 0.87591 1.00596 1.23883 0.87465 0.93459 1.02622 1.74832 1.15175 0.96365 1.22029 1.85235 1.36095 1.11858 1.65806 1.31827 0.78675 1.01619 0.90296 1.17947 0.95469 0.71827 0.94252 0.92095 1.58957 1.05286 1.65220 1.03432 1.20821 1.52820 0.92542 0.93746 0.93353 1.25538 0.93531 0.96541 1.00080 1.70163 1.44417 1.02703 1.32798 0.85600 0.78415 0.77871 0.79910 1.20287 1.20143 1.19609 1.72175 1.30303 0.98968 1.21826 0.89798 0.90322 0.87468 0.79400 0.79121 0.86489 0.84869 0.92624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.60 9.20 71.24 0.66 -1.94 16 2 C -0.09 -2.21 5.92 -19.57 -0.12 -2.33 16 3 C -0.04 -0.67 9.61 22.46 0.22 -0.46 16 4 C -0.13 -2.41 6.25 22.46 0.14 -2.27 16 5 Br 0.00 -0.03 33.73 -20.37 -0.69 -0.71 16 6 C 0.12 2.95 10.94 84.77 0.93 3.87 16 7 N -0.47 -15.50 10.29 -184.72 -1.90 -17.40 16 8 C 0.18 6.04 6.75 41.99 0.28 6.32 16 9 C 0.20 7.85 7.78 137.32 1.07 8.92 16 10 N -0.37 -14.13 8.69 -59.18 -0.51 -14.64 16 11 O 0.07 2.68 11.27 74.56 0.84 3.52 16 12 C 0.20 8.90 7.22 88.36 0.64 9.54 16 13 C 0.32 15.51 3.16 43.42 0.14 15.65 16 14 H 0.06 3.29 8.14 -2.39 -0.02 3.27 16 15 N -0.80 -35.00 8.53 -174.94 -1.49 -36.49 16 16 C -0.56 -29.84 8.71 25.60 0.22 -29.61 16 17 H 0.05 2.62 7.74 -2.91 -0.02 2.59 16 18 C 0.05 2.62 5.39 84.66 0.46 3.08 16 19 N -0.87 -47.60 12.77 21.45 0.27 -47.33 16 20 Si 0.96 42.00 29.54 68.60 2.03 44.02 16 21 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 22 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 23 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 24 N -0.50 -22.81 11.56 -302.56 -3.50 -26.31 16 25 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 26 H 0.08 2.09 5.18 -2.39 -0.01 2.08 16 27 H 0.11 1.45 8.10 -2.39 -0.02 1.43 16 28 H 0.19 1.91 8.06 -2.91 -0.02 1.89 16 29 H 0.19 3.47 8.06 -2.91 -0.02 3.44 16 30 H 0.32 12.36 9.06 -89.70 -0.81 11.54 16 31 H 0.34 13.85 8.96 -89.69 -0.80 13.04 16 32 H 0.26 13.77 8.31 -92.71 -0.77 13.00 16 Total: -1.00 -63.23 308.40 -0.73 -63.96 By element: Atomic # 1 Polarization: 21.02 SS G_CDS: -0.41 Total: 20.61 kcal Atomic # 6 Polarization: 6.14 SS G_CDS: 4.63 Total: 10.77 kcal Atomic # 7 Polarization: -135.04 SS G_CDS: -7.13 Total: -142.17 kcal Atomic # 8 Polarization: 2.68 SS G_CDS: 0.84 Total: 3.52 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 2.03 Total: 44.02 kcal Atomic # 35 Polarization: -0.03 SS G_CDS: -0.69 Total: -0.71 kcal Total: -63.23 -0.73 -63.96 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001248224437.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.417 kcal (2) G-P(sol) polarization free energy of solvation -63.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.958 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds