Wall clock time and date at job start Tue Mar 31 2020 20:29:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.38487 * 120.75258 * 2 1 4 4 C 1.39222 * 119.08381 * 180.25662 * 3 2 1 5 5 C 1.48463 * 119.70600 * 179.73063 * 4 3 2 6 6 N 1.30726 * 126.41203 * 359.75753 * 5 4 3 7 7 O 1.21297 * 110.10222 * 180.02562 * 6 5 4 8 8 C 1.33661 * 110.02208 * 359.97438 * 7 6 5 9 9 C 1.50700 * 126.44320 * 179.97438 * 8 7 6 10 10 H 1.08994 * 109.47551 * 195.02578 * 9 8 7 11 11 N 1.46900 * 109.47395 * 315.03040 * 9 8 7 12 12 C 1.50702 * 109.46869 * 75.02633 * 9 8 7 13 13 H 1.08002 * 120.00299 * 0.02562 * 12 9 8 14 14 C 1.37884 * 119.99942 * 179.72213 * 12 9 8 15 15 N 1.31514 * 119.99698 * 0.28408 * 14 12 9 16 16 Si 1.86794 * 119.99837 * 180.27476 * 14 12 9 17 17 H 1.48501 * 109.47188 * 90.00793 * 16 14 12 18 18 H 1.48501 * 109.47085 * 210.00372 * 16 14 12 19 19 H 1.48498 * 109.47634 * 330.00608 * 16 14 12 20 20 N 1.30977 * 107.11934 * 0.24581 * 8 7 6 21 21 N 1.32647 * 120.58226 * 359.45810 * 4 3 2 22 22 C 1.31661 * 121.64196 * 0.27703 * 21 4 3 23 23 C 1.38468 * 120.87352 * 359.97438 * 22 21 4 24 24 Br 1.89099 * 120.33949 * 179.97438 * 23 22 21 25 25 H 1.09000 * 109.47151 * 270.27446 * 1 2 3 26 26 H 1.08998 * 109.46988 * 30.27880 * 1 2 3 27 27 H 1.08997 * 109.46716 * 150.27896 * 1 2 3 28 28 H 1.07999 * 120.45791 * 359.97438 * 3 2 1 29 29 H 1.00907 * 110.99792 * 296.04461 * 11 9 8 30 30 H 1.00903 * 111.00086 * 59.99217 * 11 9 8 31 31 H 0.97005 * 119.99651 * 179.97438 * 15 14 12 32 32 H 1.07999 * 119.56535 * 179.97438 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2152 1.1901 0.0000 4 6 3.6068 1.1496 -0.0054 5 6 4.3798 2.4171 -0.0116 6 7 3.8855 3.6274 -0.0170 7 8 4.7824 4.4440 -0.0216 8 6 5.9663 3.8234 -0.0190 9 6 7.3220 4.4816 -0.0236 10 1 8.0821 3.7460 -0.2864 11 7 7.3339 5.5715 -1.0084 12 6 7.6144 5.0387 1.3458 13 1 6.8912 4.9271 2.1401 14 6 8.8081 5.6857 1.5864 15 7 9.6890 5.8213 0.6193 16 14 9.1738 6.3695 3.2857 17 1 9.8577 5.3328 4.0998 18 1 10.0523 7.5604 3.1615 19 1 7.9025 6.7590 3.9468 20 7 5.7267 2.5358 -0.0177 21 7 4.2482 -0.0115 0.0002 22 6 3.6010 -1.1581 0.0057 23 6 2.2168 -1.1926 0.0062 24 35 1.3026 -2.8480 0.0134 25 1 -0.3633 0.0049 1.0276 26 1 -0.3633 0.8875 -0.5182 27 1 -0.3633 -0.8925 -0.5095 28 1 1.6951 2.1366 -0.0004 29 1 7.2042 5.2153 -1.9435 30 1 6.6373 6.2670 -0.7866 31 1 10.5286 6.2768 0.7884 32 1 4.1571 -2.0839 0.0098 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001248225621.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:42 Heat of formation + Delta-G solvation = 108.045665 kcal Electronic energy + Delta-G solvation = -20007.909049 eV Core-core repulsion = 16632.185332 eV Total energy + Delta-G solvation = -3375.723717 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 338.012 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -44.97950 -40.58654 -35.62718 -35.17529 -34.38443 -32.83988 -31.94257 -30.93257 -29.66606 -28.15651 -26.51882 -24.74997 -24.01389 -23.14851 -21.97522 -20.30551 -17.72464 -17.46239 -16.91398 -16.42265 -16.15836 -15.77043 -14.91496 -14.86654 -14.58825 -14.28235 -13.64518 -13.37897 -13.14738 -13.07935 -12.83596 -12.29780 -12.02397 -11.89667 -11.43515 -11.18787 -10.95980 -10.88974 -10.76158 -10.49902 -10.26565 -9.92836 -9.83403 -9.77185 -9.28666 -8.83746 -8.61820 -7.66020 -6.10254 -4.28259 0.22204 0.83182 1.13944 1.77542 2.68651 3.27248 3.31038 3.34216 3.37181 3.55208 3.60686 3.98460 4.21595 4.34236 4.45872 4.64770 4.80025 4.96229 5.15623 5.17127 5.33660 5.40918 5.42738 5.63208 5.75032 5.93236 6.08683 6.34333 6.47963 6.99458 7.56050 7.65065 7.78680 8.21064 8.60592 8.68438 8.81474 9.41786 10.94412 Molecular weight = 338.01amu Principal moments of inertia in cm(-1) A = 0.028889 B = 0.002427 C = 0.002372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.000372 B =11534.856841 C =11801.976164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.012 4.012 3 C -0.137 4.137 4 C 0.235 3.765 5 C 0.191 3.809 6 N -0.385 5.385 7 O 0.077 5.923 8 C 0.201 3.799 9 C 0.310 3.690 10 H 0.090 0.910 11 N -0.798 5.798 12 C -0.544 4.544 13 H 0.059 0.941 14 C 0.090 3.910 15 N -0.840 5.840 16 Si 0.897 3.103 17 H -0.278 1.278 18 H -0.283 1.283 19 H -0.273 1.273 20 N -0.473 5.473 21 N -0.440 5.440 22 C 0.144 3.856 23 C -0.149 4.149 24 Br -0.031 7.031 25 H 0.087 0.913 26 H 0.080 0.920 27 H 0.082 0.918 28 H 0.152 0.848 29 H 0.307 0.693 30 H 0.331 0.669 31 H 0.262 0.738 32 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.887 -15.054 -2.995 24.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.022 4.022 3 C -0.160 4.160 4 C 0.098 3.902 5 C -0.080 4.080 6 N -0.095 5.095 7 O 0.017 5.983 8 C -0.021 4.021 9 C 0.196 3.804 10 H 0.108 0.892 11 N -0.324 5.324 12 C -0.584 4.584 13 H 0.077 0.923 14 C -0.119 4.119 15 N -0.473 5.473 16 Si 0.724 3.276 17 H -0.204 1.204 18 H -0.209 1.209 19 H -0.198 1.198 20 N -0.205 5.205 21 N -0.150 5.150 22 C -0.017 4.017 23 C -0.231 4.231 24 Br 0.054 6.946 25 H 0.105 0.895 26 H 0.099 0.901 27 H 0.101 0.899 28 H 0.170 0.830 29 H 0.119 0.881 30 H 0.143 0.857 31 H 0.072 0.928 32 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -18.077 -15.687 -2.842 24.103 hybrid contribution -1.275 0.494 0.762 1.566 sum -19.352 -15.193 -2.080 24.691 Atomic orbital electron populations 1.21027 0.88794 1.04418 1.03927 1.20150 0.97514 0.90811 0.93686 1.21945 0.93359 0.99297 1.01360 1.18044 0.88650 0.88321 0.95213 1.23307 0.88684 0.91695 1.04312 1.74742 1.13762 0.99705 1.21257 1.85233 1.13562 1.34021 1.65493 1.32395 0.93372 0.86773 0.89573 1.18443 0.77693 0.89540 0.94675 0.89234 1.59154 1.56011 1.14358 1.02899 1.20622 1.03934 1.40829 0.92967 0.92276 1.24864 0.95423 0.94740 0.96836 1.70076 1.07284 1.38862 1.31069 0.86533 0.78463 0.78650 0.83962 1.20428 1.20895 1.19772 1.72209 1.10840 1.16377 1.21074 1.67718 1.39494 0.96987 1.10834 1.22903 0.89202 0.96622 0.92975 1.23061 0.96406 0.92562 1.11111 1.96703 1.76690 1.23638 1.97550 0.89486 0.90107 0.89886 0.83040 0.88148 0.85655 0.92771 0.81060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.92 9.62 36.01 0.35 -0.58 16 2 C -0.01 -0.13 5.92 -104.32 -0.62 -0.75 16 3 C -0.14 -1.80 9.43 -39.12 -0.37 -2.17 16 4 C 0.23 3.95 6.75 -82.94 -0.56 3.39 16 5 C 0.19 3.80 7.90 -156.13 -1.23 2.56 16 6 N -0.38 -7.52 11.83 30.96 0.37 -7.16 16 7 O 0.08 1.59 11.27 18.06 0.20 1.79 16 8 C 0.20 4.41 7.22 -12.99 -0.09 4.32 16 9 C 0.31 7.32 3.15 -70.02 -0.22 7.10 16 10 H 0.09 2.30 8.14 -51.93 -0.42 1.88 16 11 N -0.80 -17.19 8.54 -6.65 -0.06 -17.25 16 12 C -0.54 -14.23 8.71 -34.44 -0.30 -14.53 16 13 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 14 C 0.09 2.38 5.39 -17.82 -0.10 2.28 16 15 N -0.84 -22.84 12.78 55.43 0.71 -22.13 16 16 Si 0.90 20.41 29.54 -169.99 -5.02 15.39 16 17 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 18 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 19 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 20 N -0.47 -10.51 11.56 -9.89 -0.11 -10.62 16 21 N -0.44 -7.25 10.29 -9.74 -0.10 -7.35 16 22 C 0.14 1.80 10.94 -17.54 -0.19 1.61 16 23 C -0.15 -1.62 6.25 -39.30 -0.25 -1.87 16 24 Br -0.03 -0.26 31.96 -68.01 -2.17 -2.43 16 25 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.08 0.51 8.10 -51.93 -0.42 0.09 16 27 H 0.08 0.55 6.77 -51.93 -0.35 0.20 16 28 H 0.15 1.82 7.86 -52.49 -0.41 1.40 16 29 H 0.31 5.82 9.06 -39.29 -0.36 5.46 16 30 H 0.33 6.73 8.96 -39.29 -0.35 6.38 16 31 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 32 H 0.17 1.67 8.06 -52.49 -0.42 1.25 16 LS Contribution 311.52 15.07 4.69 4.69 Total: -1.00 -29.17 311.52 -7.78 -36.94 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -2.70 Total: 6.75 kcal Atomic # 6 Polarization: 4.96 SS G_CDS: -3.58 Total: 1.38 kcal Atomic # 7 Polarization: -65.32 SS G_CDS: 0.80 Total: -64.51 kcal Atomic # 8 Polarization: 1.59 SS G_CDS: 0.20 Total: 1.79 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Atomic # 35 Polarization: -0.26 SS G_CDS: -2.17 Total: -2.43 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -29.17 -7.78 -36.94 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001248225621.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.989 kcal (2) G-P(sol) polarization free energy of solvation -29.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.943 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds