Wall clock time and date at job start Tue Mar 31 2020 20:29:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.38487 * 120.75258 * 2 1 4 4 C 1.39222 * 119.08381 * 180.25662 * 3 2 1 5 5 C 1.48463 * 119.70600 * 179.73063 * 4 3 2 6 6 N 1.30726 * 126.41203 * 359.75753 * 5 4 3 7 7 O 1.21297 * 110.10222 * 180.02562 * 6 5 4 8 8 C 1.33661 * 110.02208 * 359.97438 * 7 6 5 9 9 C 1.50700 * 126.44320 * 179.97438 * 8 7 6 10 10 H 1.08994 * 109.47551 * 195.02578 * 9 8 7 11 11 N 1.46900 * 109.47395 * 315.03040 * 9 8 7 12 12 C 1.50702 * 109.46869 * 75.02633 * 9 8 7 13 13 H 1.08002 * 120.00299 * 0.02562 * 12 9 8 14 14 C 1.37884 * 119.99942 * 179.72213 * 12 9 8 15 15 N 1.31514 * 119.99698 * 0.28408 * 14 12 9 16 16 Si 1.86794 * 119.99837 * 180.27476 * 14 12 9 17 17 H 1.48501 * 109.47188 * 90.00793 * 16 14 12 18 18 H 1.48501 * 109.47085 * 210.00372 * 16 14 12 19 19 H 1.48498 * 109.47634 * 330.00608 * 16 14 12 20 20 N 1.30977 * 107.11934 * 0.24581 * 8 7 6 21 21 N 1.32647 * 120.58226 * 359.45810 * 4 3 2 22 22 C 1.31661 * 121.64196 * 0.27703 * 21 4 3 23 23 C 1.38468 * 120.87352 * 359.97438 * 22 21 4 24 24 Br 1.89099 * 120.33949 * 179.97438 * 23 22 21 25 25 H 1.09000 * 109.47151 * 270.27446 * 1 2 3 26 26 H 1.08998 * 109.46988 * 30.27880 * 1 2 3 27 27 H 1.08997 * 109.46716 * 150.27896 * 1 2 3 28 28 H 1.07999 * 120.45791 * 359.97438 * 3 2 1 29 29 H 1.00907 * 110.99792 * 296.04461 * 11 9 8 30 30 H 1.00903 * 111.00086 * 59.99217 * 11 9 8 31 31 H 0.97005 * 119.99651 * 179.97438 * 15 14 12 32 32 H 1.07999 * 119.56535 * 179.97438 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2152 1.1901 0.0000 4 6 3.6068 1.1496 -0.0054 5 6 4.3798 2.4171 -0.0116 6 7 3.8855 3.6274 -0.0170 7 8 4.7824 4.4440 -0.0216 8 6 5.9663 3.8234 -0.0190 9 6 7.3220 4.4816 -0.0236 10 1 8.0821 3.7460 -0.2864 11 7 7.3339 5.5715 -1.0084 12 6 7.6144 5.0387 1.3458 13 1 6.8912 4.9271 2.1401 14 6 8.8081 5.6857 1.5864 15 7 9.6890 5.8213 0.6193 16 14 9.1738 6.3695 3.2857 17 1 9.8577 5.3328 4.0998 18 1 10.0523 7.5604 3.1615 19 1 7.9025 6.7590 3.9468 20 7 5.7267 2.5358 -0.0177 21 7 4.2482 -0.0115 0.0002 22 6 3.6010 -1.1581 0.0057 23 6 2.2168 -1.1926 0.0062 24 35 1.3026 -2.8480 0.0134 25 1 -0.3633 0.0049 1.0276 26 1 -0.3633 0.8875 -0.5182 27 1 -0.3633 -0.8925 -0.5095 28 1 1.6951 2.1366 -0.0004 29 1 7.2042 5.2153 -1.9435 30 1 6.6373 6.2670 -0.7866 31 1 10.5286 6.2768 0.7884 32 1 4.1571 -2.0839 0.0098 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001248225621.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:42 Heat of formation + Delta-G solvation = 86.590474 kcal Electronic energy + Delta-G solvation = -20008.839415 eV Core-core repulsion = 16632.185332 eV Total energy + Delta-G solvation = -3376.654084 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 338.012 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -46.57937 -41.60215 -37.27548 -36.79995 -35.42201 -34.25184 -33.50580 -32.39328 -30.76797 -28.96233 -28.42490 -26.05669 -25.63724 -24.45757 -23.30372 -21.77450 -19.38904 -18.88793 -18.34050 -17.96657 -17.39186 -16.88565 -16.63030 -16.41288 -15.87089 -15.55969 -15.20270 -14.67499 -14.15095 -14.05511 -14.00371 -13.73738 -13.27323 -13.13135 -12.92311 -12.82525 -12.72318 -12.29929 -12.19616 -12.04581 -11.68699 -11.53645 -11.02208 -10.78172 -10.74240 -10.62932 -9.96995 -9.40741 -8.10840 -6.35120 -0.89647 -0.10940 0.20055 0.27783 1.19133 1.47170 1.48938 1.57970 1.81081 2.09984 2.41505 2.44245 2.72958 3.16500 3.38209 3.43579 3.57292 3.68847 3.93538 4.17577 4.23673 4.39328 4.45234 4.64595 4.64803 4.77777 4.92369 4.99186 5.10438 5.24119 5.62007 5.83081 6.37792 6.51284 6.80470 6.95879 7.06571 7.38080 8.93863 Molecular weight = 338.01amu Principal moments of inertia in cm(-1) A = 0.028889 B = 0.002427 C = 0.002372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.000372 B =11534.856841 C =11801.976164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.004 4.004 3 C -0.130 4.130 4 C 0.196 3.804 5 C 0.194 3.806 6 N -0.382 5.382 7 O 0.073 5.927 8 C 0.198 3.802 9 C 0.319 3.681 10 H 0.063 0.937 11 N -0.801 5.801 12 C -0.561 4.561 13 H 0.048 0.952 14 C 0.050 3.950 15 N -0.867 5.867 16 Si 0.958 3.042 17 H -0.277 1.277 18 H -0.276 1.276 19 H -0.272 1.272 20 N -0.497 5.497 21 N -0.478 5.478 22 C 0.139 3.861 23 C -0.142 4.142 24 Br 0.002 6.998 25 H 0.103 0.897 26 H 0.095 0.905 27 H 0.093 0.907 28 H 0.161 0.839 29 H 0.323 0.677 30 H 0.338 0.662 31 H 0.265 0.735 32 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.054 -16.161 -2.571 26.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.014 4.014 3 C -0.153 4.153 4 C 0.060 3.940 5 C -0.077 4.077 6 N -0.093 5.093 7 O 0.015 5.985 8 C -0.025 4.025 9 C 0.205 3.795 10 H 0.081 0.919 11 N -0.329 5.329 12 C -0.600 4.600 13 H 0.067 0.933 14 C -0.157 4.157 15 N -0.501 5.501 16 Si 0.783 3.217 17 H -0.202 1.202 18 H -0.201 1.201 19 H -0.196 1.196 20 N -0.230 5.230 21 N -0.189 5.189 22 C -0.022 4.022 23 C -0.225 4.225 24 Br 0.087 6.913 25 H 0.121 0.879 26 H 0.113 0.887 27 H 0.112 0.888 28 H 0.179 0.821 29 H 0.135 0.865 30 H 0.151 0.849 31 H 0.074 0.926 32 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -20.255 -16.775 -2.427 26.412 hybrid contribution -0.757 0.620 0.590 1.142 sum -21.012 -16.156 -1.837 26.569 Atomic orbital electron populations 1.21163 0.85925 1.05713 1.05254 1.20545 0.99298 0.89765 0.91774 1.22041 0.91899 1.00763 1.00552 1.18063 0.89725 0.87383 0.98860 1.23906 0.88032 0.93046 1.02699 1.74695 1.13094 0.99593 1.21916 1.85211 1.13197 1.34237 1.65835 1.31917 0.93360 0.86922 0.90301 1.17971 0.78021 0.89242 0.94233 0.91929 1.58968 1.56486 1.14015 1.03410 1.20825 1.04078 1.41222 0.93879 0.93333 1.25542 0.95154 0.94902 1.00096 1.70165 1.07626 1.39512 1.32762 0.85590 0.78203 0.78090 0.79859 1.20245 1.20129 1.19630 1.72188 1.12561 1.16507 1.21724 1.67578 1.41157 0.97899 1.12241 1.23280 0.90302 0.96131 0.92511 1.23260 0.96142 0.94133 1.08936 1.96749 1.75796 1.21435 1.97317 0.87899 0.88658 0.88803 0.82140 0.86463 0.84864 0.92601 0.78923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.39 9.62 71.24 0.69 -0.70 16 2 C 0.00 -0.08 5.92 -19.67 -0.12 -0.20 16 3 C -0.13 -3.26 9.43 22.57 0.21 -3.04 16 4 C 0.20 6.59 6.75 41.99 0.28 6.88 16 5 C 0.19 7.88 7.90 137.32 1.09 8.97 16 6 N -0.38 -15.08 11.83 -59.19 -0.70 -15.78 16 7 O 0.07 3.05 11.27 74.67 0.84 3.89 16 8 C 0.20 8.94 7.22 88.36 0.64 9.58 16 9 C 0.32 15.56 3.15 43.42 0.14 15.70 16 10 H 0.06 3.38 8.14 -2.39 -0.02 3.36 16 11 N -0.80 -35.11 8.54 -174.96 -1.49 -36.60 16 12 C -0.56 -29.93 8.71 25.60 0.22 -29.71 16 13 H 0.05 2.63 7.74 -2.91 -0.02 2.61 16 14 C 0.05 2.62 5.39 84.66 0.46 3.08 16 15 N -0.87 -47.60 12.78 21.45 0.27 -47.32 16 16 Si 0.96 42.03 29.54 68.60 2.03 44.05 16 17 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 18 H -0.28 -11.72 7.11 99.48 0.71 -11.02 16 19 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 20 N -0.50 -22.79 11.56 -302.57 -3.50 -26.29 16 21 N -0.48 -15.78 10.29 -184.73 -1.90 -17.68 16 22 C 0.14 3.31 10.94 84.77 0.93 4.24 16 23 C -0.14 -2.77 6.25 22.45 0.14 -2.63 16 24 Br 0.00 0.03 31.96 -20.37 -0.65 -0.62 16 25 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 26 H 0.09 0.85 8.10 -2.39 -0.02 0.83 16 27 H 0.09 0.88 6.77 -2.39 -0.02 0.87 16 28 H 0.16 3.62 7.86 -2.91 -0.02 3.60 16 29 H 0.32 12.41 9.06 -89.69 -0.81 11.59 16 30 H 0.34 13.92 8.96 -89.69 -0.80 13.11 16 31 H 0.26 13.78 8.31 -92.70 -0.77 13.01 16 32 H 0.19 3.48 8.06 -2.91 -0.02 3.46 16 Total: -1.00 -63.40 311.52 -0.84 -64.24 By element: Atomic # 1 Polarization: 20.37 SS G_CDS: -0.41 Total: 19.96 kcal Atomic # 6 Polarization: 7.49 SS G_CDS: 4.67 Total: 12.16 kcal Atomic # 7 Polarization: -136.36 SS G_CDS: -7.32 Total: -143.68 kcal Atomic # 8 Polarization: 3.05 SS G_CDS: 0.84 Total: 3.89 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 2.03 Total: 44.05 kcal Atomic # 35 Polarization: 0.03 SS G_CDS: -0.65 Total: -0.62 kcal Total: -63.40 -0.84 -64.24 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001248225621.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.830 kcal (2) G-P(sol) polarization free energy of solvation -63.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.239 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds