Wall clock time and date at job start Tue Mar 31 2020 20:29:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38374 * 120.31829 * 2 1 4 4 N 1.31675 * 120.90925 * 179.77242 * 3 2 1 5 5 C 1.32647 * 121.63858 * 0.49985 * 4 3 2 6 6 C 1.48452 * 119.72359 * 179.75017 * 5 4 3 7 7 N 1.30744 * 126.40878 * 180.02562 * 6 5 4 8 8 O 1.21285 * 110.09875 * 179.97438 * 7 6 5 9 9 C 1.33662 * 110.03016 * 359.97438 * 8 7 6 10 10 C 1.50696 * 126.44608 * 179.97438 * 9 8 7 11 11 H 1.09001 * 109.47362 * 194.97927 * 10 9 8 12 12 N 1.46901 * 109.47220 * 314.97786 * 10 9 8 13 13 C 1.50697 * 109.47063 * 74.97762 * 10 9 8 14 14 H 1.08002 * 119.99988 * 359.97438 * 13 10 9 15 15 C 1.37885 * 119.99833 * 180.02562 * 13 10 9 16 16 N 1.31514 * 119.99605 * 179.97438 * 15 13 10 17 17 Si 1.86798 * 120.00123 * 359.97438 * 15 13 10 18 18 H 1.48499 * 109.47121 * 90.00062 * 17 15 13 19 19 H 1.48497 * 109.46691 * 209.99981 * 17 15 13 20 20 H 1.48500 * 109.47285 * 329.99970 * 17 15 13 21 21 N 1.30976 * 107.11775 * 359.73237 * 9 8 7 22 22 C 1.39306 * 120.54789 * 359.76722 * 5 4 3 23 23 Br 1.89093 * 120.47517 * 179.97438 * 22 5 4 24 24 C 1.38618 * 119.04759 * 359.97438 * 22 5 4 25 25 H 1.09001 * 109.46953 * 269.71515 * 1 2 3 26 26 H 1.09000 * 109.47318 * 29.71113 * 1 2 3 27 27 H 1.09000 * 109.47161 * 149.71743 * 1 2 3 28 28 H 1.07996 * 119.54598 * 0.02562 * 3 2 1 29 29 H 1.00905 * 111.00279 * 296.04327 * 12 10 9 30 30 H 1.00898 * 111.00069 * 59.99611 * 12 10 9 31 31 H 0.97001 * 119.99782 * 179.97438 * 16 15 13 32 32 H 1.08000 * 120.75025 * 179.97438 * 24 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2056 1.1945 0.0000 4 7 3.5223 1.2081 0.0045 5 6 4.2297 0.0860 -0.0007 6 6 5.7128 0.1510 -0.0009 7 7 6.5341 -0.8663 -0.0061 8 8 7.6821 -0.4751 -0.0052 9 6 7.7104 0.8612 0.0003 10 6 8.9413 1.7306 0.0038 11 1 8.6655 2.7500 0.2736 12 7 9.9062 1.2094 0.9812 13 6 9.5639 1.7252 -1.3686 14 1 9.1135 1.1495 -2.1637 15 6 10.7091 2.4545 -1.6089 16 7 11.2527 2.4494 -2.8065 17 14 11.4885 3.4498 -0.2336 18 1 12.4747 2.6073 0.4895 19 1 12.1759 4.6341 -0.8080 20 1 10.4344 3.8990 0.7110 21 7 6.4671 1.2732 -0.0031 22 6 3.5925 -1.1527 -0.0063 23 35 4.6030 -2.7510 -0.0144 24 6 2.2070 -1.1969 -0.0058 25 1 -0.3633 -0.0051 1.0277 26 1 -0.3634 0.8925 -0.5093 27 1 -0.3633 -0.8874 -0.5182 28 1 1.6634 2.1285 0.0004 29 1 9.5362 1.2627 1.9184 30 1 10.1778 0.2649 0.7529 31 1 12.0582 2.9628 -2.9756 32 1 1.6847 -2.1422 -0.0104 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001248225675.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:39 Heat of formation + Delta-G solvation = 115.211756 kcal Electronic energy + Delta-G solvation = -20315.348927 eV Core-core repulsion = 16939.935955 eV Total energy + Delta-G solvation = -3375.412972 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 338.012 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -44.96249 -40.58889 -35.70777 -35.38079 -33.80581 -33.43469 -32.08832 -30.97635 -29.86033 -27.98890 -26.83674 -24.58256 -23.74521 -23.04226 -22.15522 -20.46259 -17.79273 -17.65193 -17.05351 -16.82641 -16.07316 -15.27193 -15.00553 -14.88519 -14.76345 -14.14364 -13.80661 -13.53940 -13.39590 -12.94763 -12.82241 -12.37336 -12.20357 -11.78149 -11.52110 -11.43053 -11.00675 -10.77428 -10.66558 -10.24050 -10.02348 -9.84560 -9.62316 -9.59496 -9.31018 -8.79781 -8.69235 -8.16600 -6.16614 -4.32324 0.28154 0.73910 1.33121 1.80491 2.68448 3.29561 3.49634 3.50806 3.54093 3.57417 3.66064 4.00743 4.26400 4.46760 4.51162 4.60525 4.73075 4.79029 5.10160 5.14394 5.19900 5.39587 5.46728 5.57151 5.62440 5.72960 6.07717 6.25581 6.40791 6.62884 7.21630 7.54735 7.77041 8.04810 8.38254 8.65613 8.77798 9.40146 10.91983 Molecular weight = 338.01amu Principal moments of inertia in cm(-1) A = 0.020050 B = 0.003656 C = 0.003274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.145869 B = 7657.154850 C = 8550.883056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.128 4.128 3 C 0.118 3.882 4 N -0.433 5.433 5 C 0.237 3.763 6 C 0.182 3.818 7 N -0.355 5.355 8 O 0.081 5.919 9 C 0.201 3.799 10 C 0.275 3.725 11 H 0.091 0.909 12 N -0.831 5.831 13 C -0.532 4.532 14 H 0.076 0.924 15 C 0.092 3.908 16 N -0.886 5.886 17 Si 0.936 3.064 18 H -0.275 1.275 19 H -0.313 1.313 20 H -0.271 1.271 21 N -0.466 5.466 22 C -0.121 4.121 23 Br 0.002 6.998 24 C -0.051 4.051 25 H 0.078 0.922 26 H 0.076 0.924 27 H 0.072 0.928 28 H 0.170 0.830 29 H 0.319 0.681 30 H 0.347 0.653 31 H 0.269 0.731 32 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.726 -9.117 8.099 24.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.132 4.132 3 C -0.042 4.042 4 N -0.142 5.142 5 C 0.098 3.902 6 C -0.088 4.088 7 N -0.063 5.063 8 O 0.019 5.981 9 C -0.021 4.021 10 C 0.162 3.838 11 H 0.109 0.891 12 N -0.361 5.361 13 C -0.571 4.571 14 H 0.094 0.906 15 C -0.115 4.115 16 N -0.521 5.521 17 Si 0.767 3.233 18 H -0.201 1.201 19 H -0.242 1.242 20 H -0.196 1.196 21 N -0.198 5.198 22 C -0.205 4.205 23 Br 0.088 6.912 24 C -0.078 4.078 25 H 0.096 0.904 26 H 0.095 0.905 27 H 0.091 0.909 28 H 0.187 0.813 29 H 0.131 0.869 30 H 0.161 0.839 31 H 0.079 0.921 32 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -19.842 -8.794 7.737 23.041 hybrid contribution -0.848 -0.636 0.640 1.239 sum -20.690 -9.431 8.377 24.232 Atomic orbital electron populations 1.20754 0.89104 1.03711 1.03069 1.21131 0.98214 0.93424 1.00445 1.22927 0.88915 0.98131 0.94222 1.67701 1.08083 1.28524 1.09925 1.17838 0.88165 0.87560 0.96636 1.23227 0.94520 0.85692 1.05374 1.75488 0.89759 1.21618 1.19480 1.85295 1.23089 1.24848 1.64883 1.31273 0.97812 0.82027 0.90976 1.18752 0.78738 0.91029 0.95248 0.89136 1.59382 1.42928 1.29283 1.04553 1.20509 1.11676 1.33127 0.91754 0.90571 1.24913 0.95564 0.95061 0.95975 1.69920 1.20468 1.40288 1.21416 0.85879 0.79330 0.77476 0.80646 1.20084 1.24222 1.19603 1.72125 1.00388 1.26686 1.20627 1.22916 0.95769 0.93634 1.08204 1.96824 1.71175 1.26198 1.97029 1.21408 0.91061 0.99491 0.95867 0.90357 0.90532 0.90902 0.81301 0.86868 0.83875 0.92138 0.83252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.55 10.03 36.01 0.36 -0.19 16 2 C -0.13 -1.17 5.90 -104.41 -0.62 -1.78 16 3 C 0.12 1.33 10.85 -17.57 -0.19 1.13 16 4 N -0.43 -7.03 10.29 -9.74 -0.10 -7.13 16 5 C 0.24 4.10 6.76 -82.91 -0.56 3.54 16 6 C 0.18 3.68 7.83 -156.12 -1.22 2.46 16 7 N -0.35 -7.04 9.02 30.96 0.28 -6.76 16 8 O 0.08 1.66 11.27 18.06 0.20 1.87 16 9 C 0.20 4.36 7.22 -12.99 -0.09 4.27 16 10 C 0.27 6.19 2.65 -70.02 -0.19 6.00 16 11 H 0.09 2.09 7.20 -51.93 -0.37 1.72 16 12 N -0.83 -16.21 6.75 -6.65 -0.04 -16.26 16 13 C -0.53 -14.41 9.29 -34.44 -0.32 -14.73 16 14 H 0.08 2.29 7.98 -52.49 -0.42 1.88 16 15 C 0.09 2.54 5.47 -17.82 -0.10 2.44 16 16 N -0.89 -26.22 13.96 55.43 0.77 -25.45 16 17 Si 0.94 22.40 26.03 -169.99 -4.42 17.97 16 18 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 19 H -0.31 -7.61 7.11 56.52 0.40 -7.21 16 20 H -0.27 -6.23 6.54 56.52 0.37 -5.86 16 21 N -0.47 -10.30 11.56 -9.89 -0.11 -10.42 16 22 C -0.12 -1.71 6.27 -39.04 -0.24 -1.96 16 23 Br 0.00 0.03 30.55 -68.01 -2.08 -2.05 16 24 C -0.05 -0.53 9.61 -39.29 -0.38 -0.90 16 25 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.08 0.30 8.09 -51.93 -0.42 -0.12 16 27 H 0.07 0.30 8.09 -51.93 -0.42 -0.12 16 28 H 0.17 1.32 8.06 -52.49 -0.42 0.89 16 29 H 0.32 5.25 9.06 -39.29 -0.36 4.89 16 30 H 0.35 6.45 8.96 -39.29 -0.35 6.09 16 31 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 32 H 0.15 1.10 8.06 -52.49 -0.42 0.68 16 LS Contribution 304.05 15.07 4.58 4.58 Total: -1.00 -32.35 304.05 -7.25 -39.60 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: -2.78 Total: 3.75 kcal Atomic # 6 Polarization: 3.84 SS G_CDS: -3.55 Total: 0.29 kcal Atomic # 7 Polarization: -66.81 SS G_CDS: 0.79 Total: -66.02 kcal Atomic # 8 Polarization: 1.66 SS G_CDS: 0.20 Total: 1.87 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -4.42 Total: 17.97 kcal Atomic # 35 Polarization: 0.03 SS G_CDS: -2.08 Total: -2.05 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -32.35 -7.25 -39.60 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001248225675.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.808 kcal (2) G-P(sol) polarization free energy of solvation -32.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.596 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds