Wall clock time and date at job start Tue Mar 31 2020 20:29:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.38553 * 120.85057 * 2 1 4 4 Br 1.89105 * 120.36710 * 359.97438 * 3 2 1 5 5 C 1.38357 * 119.26380 * 180.21424 * 3 2 1 6 6 N 1.31912 * 121.01372 * 359.81367 * 5 3 2 7 7 C 1.31714 * 121.85995 * 359.97397 * 6 5 3 8 8 C 1.39327 * 120.62442 * 359.97438 * 7 6 5 9 9 C 1.48423 * 120.53440 * 179.97438 * 8 7 6 10 10 N 1.30758 * 126.41535 * 179.97438 * 9 8 7 11 11 O 1.21289 * 110.09763 * 180.02562 * 10 9 8 12 12 C 1.33658 * 110.02814 * 0.02562 * 11 10 9 13 13 C 1.50700 * 126.44016 * 179.97438 * 12 11 10 14 14 H 1.08994 * 109.47551 * 195.02239 * 13 12 11 15 15 N 1.46900 * 109.47395 * 315.02701 * 13 12 11 16 16 C 1.50702 * 109.46869 * 75.02293 * 13 12 11 17 17 H 1.08002 * 120.00299 * 0.02562 * 16 13 12 18 18 C 1.37884 * 119.99942 * 179.72213 * 16 13 12 19 19 N 1.31514 * 119.99698 * 0.28408 * 18 16 13 20 20 Si 1.86794 * 119.99837 * 180.27476 * 18 16 13 21 21 H 1.48501 * 109.47188 * 90.00793 * 20 18 16 22 22 H 1.48501 * 109.47085 * 210.00372 * 20 18 16 23 23 H 1.48498 * 109.47634 * 330.00608 * 20 18 16 24 24 N 1.30985 * 107.12490 * 0.26194 * 12 11 10 25 25 H 1.09001 * 109.47090 * 270.22312 * 1 2 3 26 26 H 1.09005 * 109.47225 * 30.22162 * 1 2 3 27 27 H 1.08992 * 109.47282 * 150.22479 * 1 2 3 28 28 H 1.08002 * 119.49131 * 179.78990 * 5 3 2 29 29 H 1.08003 * 119.68690 * 180.02562 * 7 6 5 30 30 H 1.00907 * 110.99792 * 296.04461 * 15 13 12 31 31 H 1.00903 * 111.00086 * 59.99217 * 15 13 12 32 32 H 0.97005 * 119.99651 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2174 1.1895 0.0000 4 35 1.3069 2.8469 -0.0007 5 6 3.6005 1.1512 -0.0045 6 7 4.2486 0.0023 -0.0051 7 6 3.6158 -1.1529 -0.0010 8 6 2.2233 -1.1994 0.0048 9 6 1.5123 -2.5022 0.0089 10 7 0.2168 -2.6795 0.0148 11 8 -0.0417 -3.8645 0.0173 12 6 1.0877 -4.5794 0.0136 13 6 1.1956 -6.0825 0.0156 14 1 2.2127 -6.3735 0.2781 15 7 0.2576 -6.6396 0.9993 16 6 0.8595 -6.6120 -1.3548 17 1 0.5947 -5.9284 -2.1479 18 6 0.8962 -7.9688 -1.5977 19 7 1.2190 -8.8012 -0.6320 20 14 0.4871 -8.6245 -3.2982 21 1 1.7269 -8.6969 -4.1124 22 1 -0.1050 -9.9809 -3.1765 23 1 -0.4859 -7.7171 -3.9579 24 7 2.0831 -3.7280 0.0143 25 1 -0.3633 0.0040 1.0277 26 1 -0.3634 0.8880 -0.5173 27 1 -0.3633 -0.8919 -0.5103 28 1 4.1580 2.0762 -0.0080 29 1 4.1817 -2.0728 -0.0012 30 1 0.5011 -6.3508 1.9350 31 1 -0.6930 -6.3837 0.7778 32 1 1.2445 -9.7557 -0.8028 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001248226180.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:46 Heat of formation + Delta-G solvation = 110.909980 kcal Electronic energy + Delta-G solvation = -20368.665855 eV Core-core repulsion = 16993.066345 eV Total energy + Delta-G solvation = -3375.599511 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 338.012 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -45.00417 -40.56956 -35.69587 -35.34743 -34.43868 -32.78554 -31.81809 -30.50259 -29.98208 -28.15996 -26.56012 -24.92194 -23.83498 -22.44951 -22.40679 -20.41541 -17.73430 -17.48139 -16.83072 -16.64119 -16.40415 -15.57117 -14.89898 -14.83518 -14.63277 -14.13366 -13.67376 -13.28807 -13.11238 -13.05558 -12.75552 -12.23750 -11.89100 -11.79805 -11.43076 -11.38691 -11.06216 -10.93395 -10.68603 -10.56480 -10.35887 -10.02923 -9.83774 -9.52122 -9.30274 -8.85083 -8.66411 -7.71016 -6.15031 -4.33443 0.35017 0.70313 1.17985 1.78968 2.70740 3.23926 3.31217 3.33950 3.42416 3.49061 3.67576 4.13223 4.28067 4.31407 4.39265 4.43056 4.79887 5.08800 5.17452 5.28906 5.42812 5.46002 5.63028 5.81351 5.87843 6.08298 6.19692 6.29505 6.44815 6.93197 7.52442 7.59509 7.73350 8.16118 8.55990 8.63713 8.76573 9.37098 10.89510 Molecular weight = 338.01amu Principal moments of inertia in cm(-1) A = 0.027579 B = 0.002708 C = 0.002664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.027485 B =10335.968274 C =10509.064368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.018 3.982 3 C -0.157 4.157 4 Br -0.029 7.029 5 C 0.143 3.857 6 N -0.477 5.477 7 C 0.161 3.839 8 C -0.055 4.055 9 C 0.198 3.802 10 N -0.389 5.389 11 O 0.068 5.932 12 C 0.211 3.789 13 C 0.309 3.691 14 H 0.090 0.910 15 N -0.798 5.798 16 C -0.545 4.545 17 H 0.059 0.941 18 C 0.091 3.909 19 N -0.839 5.839 20 Si 0.897 3.103 21 H -0.278 1.278 22 H -0.283 1.283 23 H -0.273 1.273 24 N -0.499 5.499 25 H 0.087 0.913 26 H 0.079 0.921 27 H 0.104 0.896 28 H 0.168 0.832 29 H 0.179 0.821 30 H 0.307 0.693 31 H 0.331 0.669 32 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.350 20.968 3.028 21.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.007 3.993 3 C -0.239 4.239 4 Br 0.055 6.945 5 C -0.016 4.016 6 N -0.186 5.186 7 C 0.003 3.997 8 C -0.060 4.060 9 C -0.073 4.073 10 N -0.102 5.102 11 O 0.012 5.988 12 C -0.011 4.011 13 C 0.195 3.805 14 H 0.107 0.893 15 N -0.324 5.324 16 C -0.584 4.584 17 H 0.077 0.923 18 C -0.118 4.118 19 N -0.472 5.472 20 Si 0.724 3.276 21 H -0.204 1.204 22 H -0.209 1.209 23 H -0.198 1.198 24 N -0.232 5.232 25 H 0.105 0.895 26 H 0.098 0.902 27 H 0.122 0.878 28 H 0.185 0.815 29 H 0.196 0.804 30 H 0.118 0.882 31 H 0.144 0.856 32 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.049 21.376 2.875 21.594 hybrid contribution -1.149 0.150 -0.722 1.365 sum -0.100 21.526 2.153 21.634 Atomic orbital electron populations 1.21335 0.88441 1.05409 1.04239 1.20308 0.97920 0.90136 0.90938 1.22776 0.96145 0.92315 1.12620 1.96700 1.77251 1.22829 1.97687 1.22979 0.89343 0.97359 0.91902 1.67973 1.39346 0.97750 1.13525 1.23197 0.90275 0.96868 0.89410 1.18290 0.93807 0.87887 1.06019 1.23463 0.87410 0.93344 1.03059 1.74774 1.16444 0.96619 1.22313 1.85237 1.36184 1.11657 1.65705 1.32243 0.77963 1.02143 0.88755 1.18457 0.96663 0.70626 0.94714 0.89290 1.59151 1.05585 1.64793 1.02896 1.20611 1.52497 0.92429 0.92910 0.92281 1.24862 0.93660 0.96463 0.96856 1.70071 1.43202 1.02831 1.31117 0.86535 0.78773 0.78398 0.83921 1.20412 1.20873 1.19770 1.72047 1.30606 0.97510 1.23040 0.89479 0.90208 0.87757 0.81466 0.80443 0.88154 0.85615 0.92732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.72 8.84 36.00 0.32 -1.40 16 2 C 0.02 0.24 5.95 -103.96 -0.62 -0.37 16 3 C -0.16 -1.83 6.24 -39.42 -0.25 -2.07 16 4 Br -0.03 -0.28 31.97 -68.01 -2.17 -2.45 16 5 C 0.14 1.61 10.93 -17.47 -0.19 1.42 16 6 N -0.48 -6.35 10.35 -12.96 -0.13 -6.48 16 7 C 0.16 2.32 10.87 -17.20 -0.19 2.13 16 8 C -0.06 -0.85 5.89 -104.75 -0.62 -1.47 16 9 C 0.20 3.59 7.70 -156.12 -1.20 2.39 16 10 N -0.39 -7.15 8.88 30.96 0.27 -6.87 16 11 O 0.07 1.33 11.27 18.07 0.20 1.54 16 12 C 0.21 4.34 7.22 -12.99 -0.09 4.25 16 13 C 0.31 6.98 3.15 -70.02 -0.22 6.76 16 14 H 0.09 2.18 8.14 -51.93 -0.42 1.75 16 15 N -0.80 -16.63 8.54 -6.65 -0.06 -16.68 16 16 C -0.55 -13.80 8.71 -34.44 -0.30 -14.10 16 17 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 18 C 0.09 2.33 5.39 -17.82 -0.10 2.23 16 19 N -0.84 -22.31 12.78 55.43 0.71 -21.61 16 20 Si 0.90 19.99 29.54 -169.99 -5.02 14.97 16 21 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 22 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 23 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 24 N -0.50 -9.97 11.28 -9.89 -0.11 -10.09 16 25 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 26 H 0.08 0.86 6.79 -51.93 -0.35 0.51 16 27 H 0.10 1.51 5.34 -51.93 -0.28 1.23 16 28 H 0.17 1.38 8.06 -52.49 -0.42 0.95 16 29 H 0.18 2.48 7.89 -52.48 -0.41 2.06 16 30 H 0.31 5.60 9.06 -39.29 -0.36 5.24 16 31 H 0.33 6.56 8.96 -39.29 -0.35 6.21 16 32 H 0.26 6.68 8.31 -40.82 -0.34 6.34 16 LS Contribution 305.27 15.07 4.60 4.60 Total: -1.00 -26.89 305.27 -7.73 -34.62 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: -2.56 Total: 8.69 kcal Atomic # 6 Polarization: 3.22 SS G_CDS: -3.45 Total: -0.24 kcal Atomic # 7 Polarization: -62.41 SS G_CDS: 0.68 Total: -61.73 kcal Atomic # 8 Polarization: 1.33 SS G_CDS: 0.20 Total: 1.54 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.02 Total: 14.97 kcal Atomic # 35 Polarization: -0.28 SS G_CDS: -2.17 Total: -2.45 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -26.89 -7.73 -34.62 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001248226180.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.530 kcal (2) G-P(sol) polarization free energy of solvation -26.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.620 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds