Wall clock time and date at job start Tue Mar 31 2020 20:29:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.38553 * 120.85057 * 2 1 4 4 Br 1.89105 * 120.36710 * 359.97438 * 3 2 1 5 5 C 1.38357 * 119.26380 * 180.21424 * 3 2 1 6 6 N 1.31912 * 121.01372 * 359.81367 * 5 3 2 7 7 C 1.31714 * 121.85995 * 359.97397 * 6 5 3 8 8 C 1.39327 * 120.62442 * 359.97438 * 7 6 5 9 9 C 1.48423 * 120.53440 * 179.97438 * 8 7 6 10 10 N 1.30758 * 126.41535 * 179.97438 * 9 8 7 11 11 O 1.21289 * 110.09763 * 180.02562 * 10 9 8 12 12 C 1.33658 * 110.02814 * 0.02562 * 11 10 9 13 13 C 1.50700 * 126.44016 * 179.97438 * 12 11 10 14 14 H 1.08994 * 109.47551 * 195.02239 * 13 12 11 15 15 N 1.46900 * 109.47395 * 315.02701 * 13 12 11 16 16 C 1.50702 * 109.46869 * 75.02293 * 13 12 11 17 17 H 1.08002 * 120.00299 * 0.02562 * 16 13 12 18 18 C 1.37884 * 119.99942 * 179.72213 * 16 13 12 19 19 N 1.31514 * 119.99698 * 0.28408 * 18 16 13 20 20 Si 1.86794 * 119.99837 * 180.27476 * 18 16 13 21 21 H 1.48501 * 109.47188 * 90.00793 * 20 18 16 22 22 H 1.48501 * 109.47085 * 210.00372 * 20 18 16 23 23 H 1.48498 * 109.47634 * 330.00608 * 20 18 16 24 24 N 1.30985 * 107.12490 * 0.26194 * 12 11 10 25 25 H 1.09001 * 109.47090 * 270.22312 * 1 2 3 26 26 H 1.09005 * 109.47225 * 30.22162 * 1 2 3 27 27 H 1.08992 * 109.47282 * 150.22479 * 1 2 3 28 28 H 1.08002 * 119.49131 * 179.78990 * 5 3 2 29 29 H 1.08003 * 119.68690 * 180.02562 * 7 6 5 30 30 H 1.00907 * 110.99792 * 296.04461 * 15 13 12 31 31 H 1.00903 * 111.00086 * 59.99217 * 15 13 12 32 32 H 0.97005 * 119.99651 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2174 1.1895 0.0000 4 35 1.3069 2.8469 -0.0007 5 6 3.6005 1.1512 -0.0045 6 7 4.2486 0.0023 -0.0051 7 6 3.6158 -1.1529 -0.0010 8 6 2.2233 -1.1994 0.0048 9 6 1.5123 -2.5022 0.0089 10 7 0.2168 -2.6795 0.0148 11 8 -0.0417 -3.8645 0.0173 12 6 1.0877 -4.5794 0.0136 13 6 1.1956 -6.0825 0.0156 14 1 2.2127 -6.3735 0.2781 15 7 0.2576 -6.6396 0.9993 16 6 0.8595 -6.6120 -1.3548 17 1 0.5947 -5.9284 -2.1479 18 6 0.8962 -7.9688 -1.5977 19 7 1.2190 -8.8012 -0.6320 20 14 0.4871 -8.6245 -3.2982 21 1 1.7269 -8.6969 -4.1124 22 1 -0.1050 -9.9809 -3.1765 23 1 -0.4859 -7.7171 -3.9579 24 7 2.0831 -3.7280 0.0143 25 1 -0.3633 0.0040 1.0277 26 1 -0.3634 0.8880 -0.5173 27 1 -0.3633 -0.8919 -0.5103 28 1 4.1580 2.0762 -0.0080 29 1 4.1817 -2.0728 -0.0012 30 1 0.5011 -6.3508 1.9350 31 1 -0.6930 -6.3837 0.7778 32 1 1.2445 -9.7557 -0.8028 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001248226180.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:45 Heat of formation + Delta-G solvation = 92.339026 kcal Electronic energy + Delta-G solvation = -20369.471152 eV Core-core repulsion = 16993.066345 eV Total energy + Delta-G solvation = -3376.404808 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 338.012 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -46.50669 -41.60302 -37.24526 -36.89647 -35.60074 -34.16155 -33.43201 -31.96447 -30.96233 -29.17980 -28.40704 -26.17167 -25.51830 -23.86190 -23.49223 -21.88951 -19.32900 -18.86018 -18.31935 -17.91155 -17.67704 -16.83465 -16.63825 -16.38115 -15.87214 -15.45527 -15.05847 -14.73562 -14.32266 -14.08884 -14.06055 -13.68206 -13.26348 -13.22007 -12.88789 -12.81872 -12.70816 -12.36828 -12.15156 -12.02051 -11.72494 -11.53679 -11.10129 -10.83811 -10.62396 -10.46801 -10.01587 -9.38589 -8.10343 -6.34139 -0.75507 -0.33022 0.27493 0.27713 1.29591 1.47167 1.49874 1.58071 1.88178 2.30464 2.39385 2.45719 2.87043 3.18105 3.24642 3.33241 3.38973 3.70123 4.01344 4.10508 4.19284 4.35949 4.47437 4.52670 4.64143 4.78102 4.89416 5.02318 5.11477 5.26247 5.62803 5.84150 6.39368 6.50617 6.82220 6.97558 7.11220 7.39231 8.94078 Molecular weight = 338.01amu Principal moments of inertia in cm(-1) A = 0.027579 B = 0.002708 C = 0.002664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.027485 B =10335.968274 C =10509.064368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.018 3.982 3 C -0.158 4.158 4 Br -0.001 7.001 5 C 0.155 3.845 6 N -0.487 5.487 7 C 0.161 3.839 8 C -0.083 4.083 9 C 0.204 3.796 10 N -0.387 5.387 11 O 0.061 5.939 12 C 0.204 3.796 13 C 0.317 3.683 14 H 0.066 0.934 15 N -0.803 5.803 16 C -0.560 4.560 17 H 0.048 0.952 18 C 0.051 3.949 19 N -0.866 5.866 20 Si 0.955 3.045 21 H -0.276 1.276 22 H -0.278 1.278 23 H -0.273 1.273 24 N -0.509 5.509 25 H 0.094 0.906 26 H 0.097 0.903 27 H 0.084 0.916 28 H 0.203 0.797 29 H 0.174 0.826 30 H 0.323 0.677 31 H 0.337 0.663 32 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.267 23.087 2.733 23.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.006 3.994 3 C -0.239 4.239 4 Br 0.084 6.916 5 C -0.004 4.004 6 N -0.196 5.196 7 C 0.002 3.998 8 C -0.088 4.088 9 C -0.067 4.067 10 N -0.101 5.101 11 O 0.008 5.992 12 C -0.018 4.018 13 C 0.204 3.796 14 H 0.084 0.916 15 N -0.330 5.330 16 C -0.599 4.599 17 H 0.067 0.933 18 C -0.156 4.156 19 N -0.500 5.500 20 Si 0.780 3.220 21 H -0.202 1.202 22 H -0.203 1.203 23 H -0.198 1.198 24 N -0.243 5.243 25 H 0.112 0.888 26 H 0.116 0.884 27 H 0.102 0.898 28 H 0.220 0.780 29 H 0.191 0.809 30 H 0.135 0.865 31 H 0.150 0.850 32 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.949 23.494 2.585 23.655 hybrid contribution -1.095 -0.278 -0.596 1.277 sum -0.146 23.216 1.990 23.302 Atomic orbital electron populations 1.21311 0.87912 1.05192 1.04621 1.20456 0.98395 0.90172 0.90345 1.22910 0.96485 0.92873 1.11674 1.96740 1.76805 1.20540 1.97554 1.23575 0.89547 0.97816 0.89434 1.68036 1.39499 0.97965 1.14068 1.23149 0.89891 0.97408 0.89339 1.18347 0.94275 0.87287 1.08909 1.23904 0.87313 0.93835 1.01627 1.74816 1.16569 0.95790 1.22889 1.85228 1.35833 1.12128 1.66035 1.31727 0.78648 1.01652 0.89803 1.17979 0.95713 0.71874 0.94060 0.91626 1.58967 1.05608 1.64983 1.03482 1.20820 1.52461 0.92642 0.93942 0.93346 1.25508 0.93538 0.96651 0.99891 1.70158 1.44139 1.03000 1.32706 0.85633 0.78440 0.77800 0.80119 1.20189 1.20347 1.19760 1.72029 1.30753 0.98344 1.23166 0.88767 0.88396 0.89803 0.78045 0.80898 0.86460 0.84975 0.92659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.14 8.84 71.23 0.63 -2.51 16 2 C 0.02 0.45 5.95 -19.44 -0.12 0.33 16 3 C -0.16 -3.27 6.24 22.37 0.14 -3.13 16 4 Br 0.00 -0.02 31.97 -20.37 -0.65 -0.67 16 5 C 0.16 3.06 10.93 84.71 0.93 3.98 16 6 N -0.49 -12.11 10.35 -194.90 -2.02 -14.12 16 7 C 0.16 4.53 10.87 84.97 0.92 5.45 16 8 C -0.08 -2.53 5.89 -19.95 -0.12 -2.64 16 9 C 0.20 7.45 7.70 137.30 1.06 8.50 16 10 N -0.39 -14.26 8.88 -59.16 -0.53 -14.79 16 11 O 0.06 2.41 11.27 74.71 0.84 3.25 16 12 C 0.20 8.59 7.22 88.36 0.64 9.22 16 13 C 0.32 14.70 3.15 43.42 0.14 14.84 16 14 H 0.07 3.34 8.14 -2.39 -0.02 3.32 16 15 N -0.80 -33.86 8.54 -174.96 -1.49 -35.35 16 16 C -0.56 -28.79 8.71 25.60 0.22 -28.56 16 17 H 0.05 2.54 7.74 -2.91 -0.02 2.52 16 18 C 0.05 2.61 5.39 84.66 0.46 3.07 16 19 N -0.87 -46.42 12.78 21.45 0.27 -46.15 16 20 Si 0.95 41.11 29.54 68.60 2.03 43.14 16 21 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 22 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 23 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 24 N -0.51 -20.73 11.28 -302.53 -3.41 -24.15 16 25 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 26 H 0.10 1.89 6.79 -2.38 -0.02 1.87 16 27 H 0.08 2.37 5.34 -2.39 -0.01 2.35 16 28 H 0.20 2.50 8.06 -2.91 -0.02 2.48 16 29 H 0.17 4.89 7.89 -2.91 -0.02 4.87 16 30 H 0.32 11.86 9.06 -89.69 -0.81 11.05 16 31 H 0.34 13.47 8.96 -89.69 -0.80 12.67 16 32 H 0.26 13.48 8.31 -92.70 -0.77 12.71 16 Total: -1.00 -56.87 305.27 -0.46 -57.33 By element: Atomic # 1 Polarization: 23.35 SS G_CDS: -0.40 Total: 22.95 kcal Atomic # 6 Polarization: 3.65 SS G_CDS: 4.90 Total: 8.55 kcal Atomic # 7 Polarization: -127.39 SS G_CDS: -7.18 Total: -134.56 kcal Atomic # 8 Polarization: 2.41 SS G_CDS: 0.84 Total: 3.25 kcal Atomic # 14 Polarization: 41.11 SS G_CDS: 2.03 Total: 43.14 kcal Atomic # 35 Polarization: -0.02 SS G_CDS: -0.65 Total: -0.67 kcal Total: -56.87 -0.46 -57.33 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001248226180.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.673 kcal (2) G-P(sol) polarization free energy of solvation -56.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.334 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds