Wall clock time and date at job start Tue Mar 31 2020 21:06:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86802 * 119.99939 * 2 1 4 4 H 1.48498 * 109.47025 * 239.99584 * 3 2 1 5 5 H 1.48498 * 109.47129 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47121 * 120.00038 * 3 2 1 7 7 C 1.38801 * 119.99837 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99606 * 180.02562 * 7 2 1 9 9 S 1.76203 * 120.00040 * 0.02562 * 7 2 1 10 10 C 1.81002 * 99.99936 * 179.97438 * 9 7 2 11 11 C 1.50695 * 109.47051 * 179.97438 * 10 9 7 12 12 O 1.21290 * 120.00169 * 359.97438 * 11 10 9 13 13 N 1.34778 * 120.00092 * 180.02562 * 11 10 9 14 14 C 1.39848 * 119.99860 * 180.02562 * 13 11 10 15 15 N 1.31257 * 125.47458 * 359.97305 * 14 13 11 16 16 N 1.40435 * 106.94890 * 179.77100 * 15 14 13 17 17 H 0.96995 * 126.81709 * 180.28115 * 16 15 14 18 18 C 1.35206 * 106.36149 * 0.40202 * 16 15 14 19 19 C 1.47977 * 126.03339 * 179.85543 * 18 16 15 20 20 C 1.39535 * 120.12938 * 179.71975 * 19 18 16 21 21 C 1.37954 * 119.88690 * 179.97438 * 20 19 18 22 22 C 1.38346 * 120.15415 * 359.97438 * 21 20 19 23 23 C 1.38437 * 120.26314 * 0.02562 * 22 21 20 24 24 Cl 1.73601 * 119.94280 * 180.02562 * 23 22 21 25 25 C 1.38114 * 120.11385 * 359.97438 * 23 22 21 26 26 N 1.31781 * 107.92643 * 359.59875 * 18 16 15 27 27 H 0.96998 * 119.99707 * 0.02562 * 1 2 3 28 28 H 1.09002 * 109.47124 * 60.00139 * 10 9 7 29 29 H 1.08994 * 109.47231 * 300.00275 * 10 9 7 30 30 H 0.96995 * 119.99726 * 359.97438 * 13 11 10 31 31 H 1.08004 * 120.05039 * 359.70044 * 20 19 18 32 32 H 1.08001 * 119.92554 * 180.02562 * 21 20 19 33 33 H 1.08003 * 119.86642 * 179.97438 * 22 21 20 34 34 H 1.08002 * 120.07985 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1041 1.6964 -1.2124 5 1 1.2853 2.7465 -0.0006 6 1 3.1041 1.6964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2020 0.0010 9 16 1.1293 -2.7280 0.0005 10 6 2.5158 -3.8915 0.0005 11 6 1.9873 -5.3027 0.0012 12 8 0.7909 -5.5023 0.0021 13 7 2.8440 -6.3432 0.0018 14 6 2.3535 -7.6528 0.0019 15 7 1.0854 -7.9912 0.0018 16 7 1.0362 -9.3947 -0.0035 17 1 0.2398 -9.9484 -0.0086 18 6 2.3193 -9.8208 0.0027 19 6 2.7683 -11.2308 0.0034 20 6 4.1308 -11.5320 0.0043 21 6 4.5438 -12.8482 0.0055 22 6 3.6105 -13.8695 0.0063 23 6 2.2572 -13.5778 0.0055 24 17 1.0933 -14.8658 0.0073 25 6 1.8315 -12.2639 0.0043 26 7 3.0994 -8.7587 0.0024 27 1 -0.4849 0.8401 -0.0004 28 1 3.1244 -3.7314 0.8905 29 1 3.1244 -3.7314 -0.8894 30 1 3.8008 -6.1836 0.0015 31 1 4.8607 -10.7359 -0.0004 32 1 5.5982 -13.0821 0.0065 33 1 3.9391 -14.8983 0.0068 34 1 0.7756 -12.0371 0.0032 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001262729785.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:06:20 Heat of formation + Delta-G solvation = 82.573645 kcal Electronic energy + Delta-G solvation = -21993.702624 eV Core-core repulsion = 18274.054914 eV Total energy + Delta-G solvation = -3719.647710 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 338.034 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.35050 -39.81320 -39.20002 -37.03310 -34.91638 -32.85503 -32.48630 -32.44828 -31.26204 -30.07270 -28.84470 -25.53230 -24.67598 -23.44495 -22.65665 -21.11056 -20.09476 -18.96473 -18.02262 -17.28499 -16.67376 -16.40426 -16.12764 -15.93050 -15.73528 -14.89548 -14.82488 -14.62948 -14.30193 -14.11318 -14.07631 -13.41444 -12.64609 -12.60653 -12.47566 -12.22079 -12.11255 -11.96196 -11.48704 -11.21746 -11.07761 -11.04653 -10.80624 -10.49427 -10.29160 -9.87975 -9.64231 -9.55416 -9.31485 -9.08232 -8.67352 -8.30427 -6.54953 -6.24109 -3.95934 0.10613 0.55339 1.49976 1.62530 2.14687 2.40393 2.60882 3.05931 3.20049 3.22817 3.27911 3.32469 3.42658 3.80653 4.08592 4.16992 4.34504 4.43560 4.52943 4.72728 4.83043 5.07993 5.09159 5.11227 5.34687 5.50712 5.59395 5.68590 5.71380 5.77777 5.99458 6.04321 6.07025 6.59655 6.70449 7.11723 7.57170 7.99289 8.32324 8.35362 9.21037 10.83228 Molecular weight = 338.03amu Principal moments of inertia in cm(-1) A = 0.043763 B = 0.001726 C = 0.001662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.655866 B =16222.657174 C =16847.166692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.920 3.080 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.538 4.538 8 H 0.074 0.926 9 S -0.054 6.054 10 C -0.148 4.148 11 C 0.528 3.472 12 O -0.463 6.463 13 N -0.630 5.630 14 C 0.452 3.548 15 N -0.274 5.274 16 N -0.474 5.474 17 H 0.442 0.558 18 C 0.333 3.667 19 C -0.014 4.014 20 C -0.061 4.061 21 C -0.106 4.106 22 C -0.093 4.093 23 C -0.035 4.035 24 Cl -0.061 7.061 25 C -0.091 4.091 26 N -0.540 5.540 27 H 0.270 0.730 28 H 0.097 0.903 29 H 0.097 0.903 30 H 0.423 0.577 31 H 0.149 0.851 32 H 0.143 0.857 33 H 0.139 0.861 34 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.829 -30.589 -0.005 32.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.135 4.135 3 Si 0.746 3.254 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.686 4.686 8 H 0.092 0.908 9 S 0.173 5.827 10 C -0.299 4.299 11 C 0.314 3.686 12 O -0.329 6.329 13 N -0.287 5.287 14 C 0.082 3.918 15 N -0.110 5.110 16 N -0.194 5.194 17 H 0.289 0.711 18 C 0.057 3.943 19 C -0.017 4.017 20 C -0.081 4.081 21 C -0.124 4.124 22 C -0.112 4.112 23 C -0.062 4.062 24 Cl -0.032 7.032 25 C -0.112 4.112 26 N -0.273 5.273 27 H 0.079 0.921 28 H 0.116 0.884 29 H 0.116 0.884 30 H 0.261 0.739 31 H 0.166 0.834 32 H 0.161 0.839 33 H 0.157 0.843 34 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 7.314 -30.156 -0.004 31.031 hybrid contribution 1.835 0.711 -0.002 1.968 sum 9.150 -29.445 -0.006 30.834 Atomic orbital electron populations 1.70005 1.05973 1.27672 1.46568 1.24999 0.95042 0.99069 0.94430 0.86201 0.79217 0.81116 0.78835 1.19897 1.20811 1.19890 1.22821 0.94953 0.91458 1.59352 0.90755 1.85483 1.04198 0.96265 1.96781 1.23509 1.07164 0.93489 1.05711 1.20723 0.86560 0.85815 0.75547 1.90823 1.14646 1.84313 1.43142 1.43021 1.11665 0.99419 1.74569 1.20425 0.87127 0.86821 0.97395 1.78975 1.16133 0.86416 1.29502 1.48116 1.07832 1.05861 1.57580 0.71124 1.21742 0.82012 0.93259 0.97336 1.17434 0.93905 0.86126 1.04239 1.21444 0.94440 0.97509 0.94729 1.21173 1.00283 0.91623 0.99338 1.21293 0.90688 1.00953 0.98276 1.20667 0.90828 0.89021 1.05638 1.98401 1.58662 1.49272 1.96911 1.20943 0.99887 0.90461 0.99865 1.70270 1.33167 0.95558 1.28323 0.92058 0.88432 0.88429 0.73863 0.83366 0.83940 0.84281 0.84742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.95 13.22 55.49 0.73 -25.22 16 2 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 3 Si 0.92 21.18 29.55 -169.99 -5.02 16.16 16 4 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 5 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 6 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 7 C -0.54 -15.06 9.50 30.94 0.29 -14.76 16 8 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 9 S -0.05 -1.43 20.57 -107.50 -2.21 -3.65 16 10 C -0.15 -2.90 6.16 36.00 0.22 -2.67 16 11 C 0.53 10.10 7.81 -10.99 -0.09 10.02 16 12 O -0.46 -10.78 14.54 5.55 0.08 -10.70 16 13 N -0.63 -9.59 5.44 -12.86 -0.07 -9.66 16 14 C 0.45 7.24 8.81 -321.08 -2.83 4.41 16 15 N -0.27 -4.66 10.95 30.00 0.33 -4.33 16 16 N -0.47 -5.60 7.34 32.24 0.24 -5.37 16 17 H 0.44 3.57 8.11 -182.35 -1.48 2.09 16 18 C 0.33 3.73 7.82 -155.47 -1.22 2.51 16 19 C -0.01 -0.11 5.87 -104.97 -0.62 -0.73 16 20 C -0.06 -0.40 9.69 -39.20 -0.38 -0.78 16 21 C -0.11 -0.49 10.03 -39.65 -0.40 -0.89 16 22 C -0.09 -0.45 9.82 -39.47 -0.39 -0.84 16 23 C -0.03 -0.21 6.31 -39.55 -0.25 -0.46 16 24 Cl -0.06 -0.38 28.95 -51.86 -1.50 -1.88 16 25 C -0.09 -0.59 9.48 -39.17 -0.37 -0.96 16 26 N -0.54 -7.24 10.86 -11.58 -0.13 -7.37 16 27 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 28 H 0.10 1.71 8.14 -51.92 -0.42 1.29 16 29 H 0.10 1.71 8.14 -51.92 -0.42 1.29 16 30 H 0.42 4.81 8.82 -40.82 -0.36 4.45 16 31 H 0.15 0.96 7.85 -52.48 -0.41 0.54 16 32 H 0.14 0.30 8.06 -52.49 -0.42 -0.12 16 33 H 0.14 0.41 8.06 -52.48 -0.42 -0.01 16 34 H 0.13 0.67 7.20 -52.49 -0.38 0.29 16 LS Contribution 340.04 15.07 5.12 5.12 Total: -1.00 -36.58 340.04 -12.41 -48.99 By element: Atomic # 1 Polarization: 4.92 SS G_CDS: -3.86 Total: 1.05 kcal Atomic # 6 Polarization: 2.95 SS G_CDS: -6.11 Total: -3.16 kcal Atomic # 7 Polarization: -53.05 SS G_CDS: 1.10 Total: -51.94 kcal Atomic # 8 Polarization: -10.78 SS G_CDS: 0.08 Total: -10.70 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 16 Polarization: -1.43 SS G_CDS: -2.21 Total: -3.65 kcal Atomic # 17 Polarization: -0.38 SS G_CDS: -1.50 Total: -1.88 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -36.58 -12.41 -48.99 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262729785.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.563 kcal (2) G-P(sol) polarization free energy of solvation -36.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.989 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds