Wall clock time and date at job start Tue Mar 31 2020 21:11:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86805 * 119.99788 * 2 1 4 4 H 1.48497 * 109.47208 * 269.99845 * 3 2 1 5 5 H 1.48494 * 109.47071 * 30.00322 * 3 2 1 6 6 H 1.48501 * 109.46773 * 150.00012 * 3 2 1 7 7 C 1.38798 * 120.00005 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99872 * 359.97438 * 7 2 1 9 9 S 1.76198 * 119.99879 * 180.02562 * 7 2 1 10 10 C 1.81000 * 99.99905 * 179.97438 * 9 7 2 11 11 C 1.50692 * 109.47401 * 179.97438 * 10 9 7 12 12 O 1.21289 * 119.99836 * 0.02562 * 11 10 9 13 13 N 1.34780 * 120.00414 * 179.97438 * 11 10 9 14 14 C 1.47426 * 125.64645 * 0.02590 * 13 11 10 15 15 C 1.54912 * 104.83261 * 203.86243 * 14 13 11 16 16 C 1.55155 * 101.57968 * 322.99067 * 15 14 13 17 17 H 1.08996 * 110.72196 * 277.13505 * 16 15 14 18 18 N 1.46895 * 110.71879 * 154.04272 * 16 15 14 19 19 C 1.46900 * 111.00052 * 154.99963 * 18 16 15 20 20 C 1.50706 * 109.47334 * 180.02562 * 19 18 16 21 21 C 1.31324 * 120.00081 * 124.99692 * 20 19 18 22 22 Cl 1.73601 * 120.00062 * 0.02562 * 21 20 19 23 23 Cl 1.73602 * 120.00184 * 179.97438 * 21 20 19 24 24 C 1.47024 * 125.64847 * 179.71552 * 13 11 10 25 25 H 0.97010 * 119.99815 * 0.02562 * 1 2 3 26 26 H 1.08999 * 109.47370 * 59.99888 * 10 9 7 27 27 H 1.09007 * 109.47139 * 300.00461 * 10 9 7 28 28 H 1.09002 * 110.36518 * 322.69812 * 14 13 11 29 29 H 1.08997 * 110.36787 * 85.02191 * 14 13 11 30 30 H 1.08997 * 111.00012 * 81.06132 * 15 14 13 31 31 H 1.08992 * 111.00287 * 204.87830 * 15 14 13 32 32 H 1.00902 * 111.00207 * 31.04577 * 18 16 15 33 33 H 1.08997 * 109.47494 * 299.99926 * 19 18 16 34 34 H 1.09001 * 109.47149 * 60.00472 * 19 18 16 35 35 H 1.08001 * 119.99789 * 305.00303 * 20 19 18 36 36 H 1.08995 * 109.88316 * 298.62177 * 24 13 11 37 37 H 1.09002 * 109.88101 * 59.79072 * 24 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0465 -1.4000 5 1 1.4478 2.6526 0.7001 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2020 -0.0005 8 1 1.4703 -2.1373 -0.0005 9 16 3.7723 -1.2020 0.0001 10 6 4.0866 -2.9845 -0.0001 11 6 5.5730 -3.2325 -0.0002 12 8 6.3440 -2.2962 0.0003 13 7 6.0457 -4.4947 0.0001 14 6 5.2250 -5.7195 0.0000 15 6 6.1418 -6.8111 0.6062 16 6 7.5230 -6.4202 0.0173 17 1 7.6386 -6.8170 -0.9912 18 7 8.6103 -6.8899 0.8863 19 6 9.8521 -7.0734 0.1233 20 6 10.9420 -7.5554 1.0458 21 6 11.5952 -8.6606 0.7694 22 17 11.2037 -9.5661 -0.6590 23 17 12.8512 -9.2153 1.8317 24 6 7.4650 -4.8782 -0.0059 25 1 -0.4850 0.8401 -0.0004 26 1 3.6440 -3.4314 -0.8904 27 1 3.6432 -3.4318 0.8896 28 1 4.3384 -5.5820 0.6190 29 1 4.9405 -5.9854 -1.0180 30 1 6.1507 -6.7536 1.6946 31 1 5.8408 -7.8039 0.2720 32 1 8.3501 -7.7400 1.3635 33 1 9.6899 -7.8107 -0.6630 34 1 10.1474 -6.1243 -0.3239 35 1 11.1858 -6.9918 1.9343 36 1 7.9466 -4.5027 -0.9087 37 1 7.9616 -4.4751 0.8767 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265887994.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:11:16 Heat of formation + Delta-G solvation = -24.683834 kcal Electronic energy + Delta-G solvation = -21206.278835 eV Core-core repulsion = 17583.087586 eV Total energy + Delta-G solvation = -3623.191249 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 338.036 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.99861 -38.34243 -37.69198 -37.09478 -35.90165 -33.16484 -32.43738 -30.69805 -29.78400 -27.84584 -25.66121 -25.34610 -23.11594 -21.26244 -20.67178 -19.43790 -17.77777 -17.47205 -17.00533 -16.66373 -15.89097 -15.22644 -15.16351 -15.03493 -14.86636 -14.24105 -13.97339 -13.81277 -13.58481 -13.23266 -12.82800 -12.73607 -12.61048 -12.47940 -12.02434 -11.94992 -11.89205 -11.80613 -11.60702 -11.44233 -11.26366 -11.11250 -11.00374 -10.60775 -9.85896 -9.64517 -9.53098 -9.01469 -9.00188 -8.58024 -8.49338 -6.91934 -6.28883 -4.00647 0.77508 0.89489 1.84263 2.67040 2.95660 3.16906 3.33589 3.51207 3.57129 3.70959 4.06812 4.29765 4.33691 4.41011 4.63968 4.70512 4.78154 4.87248 4.99170 5.10201 5.13277 5.22053 5.26391 5.35910 5.40117 5.47992 5.58652 5.70767 5.80401 5.82708 6.00805 6.33394 6.45856 6.78279 7.56980 7.94095 8.41352 8.44511 9.17355 10.80221 Molecular weight = 338.04amu Principal moments of inertia in cm(-1) A = 0.036183 B = 0.001752 C = 0.001711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.659744 B =15979.712657 C =16360.672955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.096 3.904 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.521 4.521 8 H 0.088 0.912 9 S -0.142 6.142 10 C -0.117 4.117 11 C 0.547 3.453 12 O -0.517 6.517 13 N -0.624 5.624 14 C 0.102 3.898 15 C -0.135 4.135 16 C 0.075 3.925 17 H 0.066 0.934 18 N -0.673 5.673 19 C 0.077 3.923 20 C -0.103 4.103 21 C -0.047 4.047 22 Cl -0.040 7.040 23 Cl -0.038 7.038 24 C 0.119 3.881 25 H 0.271 0.729 26 H 0.096 0.904 27 H 0.097 0.903 28 H 0.083 0.917 29 H 0.070 0.930 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.349 0.651 33 H 0.055 0.945 34 H 0.098 0.902 35 H 0.154 0.846 36 H 0.063 0.937 37 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.253 -23.469 1.083 32.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.113 4.113 3 Si 0.681 3.319 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.669 4.669 8 H 0.106 0.894 9 S 0.084 5.916 10 C -0.268 4.268 11 C 0.335 3.665 12 O -0.391 6.391 13 N -0.362 5.362 14 C -0.022 4.022 15 C -0.174 4.174 16 C -0.035 4.035 17 H 0.084 0.916 18 N -0.305 5.305 19 C -0.052 4.052 20 C -0.123 4.123 21 C -0.101 4.101 22 Cl -0.012 7.012 23 Cl -0.010 7.010 24 C -0.005 4.005 25 H 0.081 0.919 26 H 0.114 0.886 27 H 0.115 0.885 28 H 0.102 0.898 29 H 0.089 0.911 30 H 0.107 0.893 31 H 0.103 0.897 32 H 0.168 0.832 33 H 0.073 0.927 34 H 0.116 0.884 35 H 0.171 0.829 36 H 0.081 0.919 37 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 23.434 -21.378 1.263 31.746 hybrid contribution -0.878 -1.348 -0.535 1.695 sum 22.556 -22.726 0.728 32.028 Atomic orbital electron populations 1.69942 1.05898 1.27754 1.48079 1.24711 0.94455 0.98962 0.93172 0.86735 0.81922 0.83269 0.79943 1.19207 1.19935 1.15897 1.22307 0.88226 0.97534 1.58784 0.89387 1.84803 1.09312 1.00056 1.97415 1.23252 0.93679 1.04219 1.05638 1.19980 0.90535 0.80592 0.75361 1.90711 1.58874 1.41230 1.48313 1.48397 1.06894 1.05331 1.75562 1.22273 0.94925 0.83809 1.01203 1.23003 0.93561 0.98740 1.02077 1.22559 0.90296 0.95222 0.95446 0.91566 1.60278 1.02503 1.37705 1.30022 1.21294 0.88154 1.02069 0.93655 1.23243 0.95190 0.92999 1.00884 1.24169 0.98237 0.96456 0.91216 1.98419 1.92032 1.74818 1.35917 1.98439 1.50883 1.89766 1.61864 1.21836 0.82898 0.93160 1.02604 0.91949 0.88610 0.88524 0.89820 0.91136 0.89322 0.89741 0.83150 0.92733 0.88381 0.82896 0.91907 0.90165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.50 13.97 55.49 0.78 -25.72 16 2 C 0.10 2.80 5.50 -17.43 -0.10 2.70 16 3 Si 0.86 21.82 27.74 -169.99 -4.72 17.11 16 4 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.24 -5.99 6.74 56.52 0.38 -5.61 16 7 C -0.52 -15.00 10.04 30.94 0.31 -14.69 16 8 H 0.09 2.63 8.03 -52.49 -0.42 2.21 16 9 S -0.14 -3.64 18.55 -107.50 -1.99 -5.63 16 10 C -0.12 -2.31 5.17 36.00 0.19 -2.12 16 11 C 0.55 10.12 7.87 -10.99 -0.09 10.03 16 12 O -0.52 -11.55 16.19 5.55 0.09 -11.46 16 13 N -0.62 -8.48 3.33 -170.52 -0.57 -9.05 16 14 C 0.10 0.97 6.69 -2.53 -0.02 0.96 16 15 C -0.14 -0.91 6.47 -24.58 -0.16 -1.07 16 16 C 0.07 0.55 3.28 -65.88 -0.22 0.33 16 17 H 0.07 0.44 7.82 -51.93 -0.41 0.03 16 18 N -0.67 -4.22 6.32 -106.06 -0.67 -4.89 16 19 C 0.08 0.43 5.85 -4.97 -0.03 0.40 16 20 C -0.10 -0.55 9.51 -36.11 -0.34 -0.89 16 21 C -0.05 -0.28 6.97 28.93 0.20 -0.08 16 22 Cl -0.04 -0.25 26.92 -51.86 -1.40 -1.64 16 23 Cl -0.04 -0.24 29.06 -51.86 -1.51 -1.74 16 24 C 0.12 1.34 6.63 -3.06 -0.02 1.32 16 25 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 26 H 0.10 1.75 8.14 -51.92 -0.42 1.33 16 27 H 0.10 1.77 7.85 -51.91 -0.41 1.36 16 28 H 0.08 0.80 7.49 -51.93 -0.39 0.41 16 29 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.35 1.77 8.42 -39.29 -0.33 1.44 16 33 H 0.05 0.30 5.95 -51.93 -0.31 -0.01 16 34 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.15 0.75 8.06 -52.49 -0.42 0.33 16 36 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.08 1.02 8.03 -51.93 -0.42 0.61 16 LS Contribution 355.78 15.07 5.36 5.36 Total: -1.00 -33.55 355.78 -9.69 -43.24 By element: Atomic # 1 Polarization: 2.33 SS G_CDS: -4.80 Total: -2.46 kcal Atomic # 6 Polarization: -2.84 SS G_CDS: -0.27 Total: -3.11 kcal Atomic # 7 Polarization: -39.20 SS G_CDS: -0.46 Total: -39.66 kcal Atomic # 8 Polarization: -11.55 SS G_CDS: 0.09 Total: -11.46 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.72 Total: 17.11 kcal Atomic # 16 Polarization: -3.64 SS G_CDS: -1.99 Total: -5.63 kcal Atomic # 17 Polarization: -0.49 SS G_CDS: -2.90 Total: -3.39 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -33.55 -9.69 -43.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265887994.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.555 kcal (2) G-P(sol) polarization free energy of solvation -33.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds