Wall clock time and date at job start Tue Mar 31 2020 21:11:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86805 * 119.99788 * 2 1 4 4 H 1.48497 * 109.47208 * 269.99845 * 3 2 1 5 5 H 1.48494 * 109.47071 * 30.00322 * 3 2 1 6 6 H 1.48501 * 109.46773 * 150.00012 * 3 2 1 7 7 C 1.38798 * 120.00005 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99872 * 359.97438 * 7 2 1 9 9 S 1.76198 * 119.99879 * 180.02562 * 7 2 1 10 10 C 1.81000 * 99.99905 * 179.97438 * 9 7 2 11 11 C 1.50692 * 109.47401 * 179.97438 * 10 9 7 12 12 O 1.21289 * 119.99836 * 0.02562 * 11 10 9 13 13 N 1.34780 * 120.00414 * 179.97438 * 11 10 9 14 14 C 1.47426 * 125.64645 * 0.02590 * 13 11 10 15 15 C 1.54912 * 104.83261 * 203.86243 * 14 13 11 16 16 C 1.55155 * 101.57968 * 322.99067 * 15 14 13 17 17 H 1.08996 * 110.72196 * 277.13505 * 16 15 14 18 18 N 1.46895 * 110.71879 * 154.04272 * 16 15 14 19 19 C 1.46900 * 111.00052 * 154.99963 * 18 16 15 20 20 C 1.50706 * 109.47334 * 180.02562 * 19 18 16 21 21 C 1.31324 * 120.00081 * 124.99692 * 20 19 18 22 22 Cl 1.73601 * 120.00062 * 0.02562 * 21 20 19 23 23 Cl 1.73602 * 120.00184 * 179.97438 * 21 20 19 24 24 C 1.47024 * 125.64847 * 179.71552 * 13 11 10 25 25 H 0.97010 * 119.99815 * 0.02562 * 1 2 3 26 26 H 1.08999 * 109.47370 * 59.99888 * 10 9 7 27 27 H 1.09007 * 109.47139 * 300.00461 * 10 9 7 28 28 H 1.09002 * 110.36518 * 322.69812 * 14 13 11 29 29 H 1.08997 * 110.36787 * 85.02191 * 14 13 11 30 30 H 1.08997 * 111.00012 * 81.06132 * 15 14 13 31 31 H 1.08992 * 111.00287 * 204.87830 * 15 14 13 32 32 H 1.00902 * 111.00207 * 31.04577 * 18 16 15 33 33 H 1.08997 * 109.47494 * 299.99926 * 19 18 16 34 34 H 1.09001 * 109.47149 * 60.00472 * 19 18 16 35 35 H 1.08001 * 119.99789 * 305.00303 * 20 19 18 36 36 H 1.08995 * 109.88316 * 298.62177 * 24 13 11 37 37 H 1.09002 * 109.88101 * 59.79072 * 24 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0465 -1.4000 5 1 1.4478 2.6526 0.7001 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2020 -0.0005 8 1 1.4703 -2.1373 -0.0005 9 16 3.7723 -1.2020 0.0001 10 6 4.0866 -2.9845 -0.0001 11 6 5.5730 -3.2325 -0.0002 12 8 6.3440 -2.2962 0.0003 13 7 6.0457 -4.4947 0.0001 14 6 5.2250 -5.7195 0.0000 15 6 6.1418 -6.8111 0.6062 16 6 7.5230 -6.4202 0.0173 17 1 7.6386 -6.8170 -0.9912 18 7 8.6103 -6.8899 0.8863 19 6 9.8521 -7.0734 0.1233 20 6 10.9420 -7.5554 1.0458 21 6 11.5952 -8.6606 0.7694 22 17 11.2037 -9.5661 -0.6590 23 17 12.8512 -9.2153 1.8317 24 6 7.4650 -4.8782 -0.0059 25 1 -0.4850 0.8401 -0.0004 26 1 3.6440 -3.4314 -0.8904 27 1 3.6432 -3.4318 0.8896 28 1 4.3384 -5.5820 0.6190 29 1 4.9405 -5.9854 -1.0180 30 1 6.1507 -6.7536 1.6946 31 1 5.8408 -7.8039 0.2720 32 1 8.3501 -7.7400 1.3635 33 1 9.6899 -7.8107 -0.6630 34 1 10.1474 -6.1243 -0.3239 35 1 11.1858 -6.9918 1.9343 36 1 7.9466 -4.5027 -0.9087 37 1 7.9616 -4.4751 0.8767 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265887994.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:11:15 Heat of formation + Delta-G solvation = -47.443442 kcal Electronic energy + Delta-G solvation = -21207.265766 eV Core-core repulsion = 17583.087586 eV Total energy + Delta-G solvation = -3624.178180 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 338.036 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.09546 -39.13213 -38.43235 -37.56475 -36.61733 -34.67347 -33.87167 -31.72824 -30.85497 -28.81062 -27.83778 -26.04870 -23.96041 -21.92550 -21.18341 -20.71100 -19.63115 -18.19565 -17.92970 -17.75036 -17.13308 -16.62863 -16.34135 -16.18930 -15.66694 -15.50425 -15.07169 -14.90585 -14.50766 -14.39736 -14.27848 -13.68982 -13.47385 -13.33380 -13.14015 -13.10252 -13.00454 -12.67933 -12.53522 -12.49469 -12.34326 -12.13886 -11.98963 -11.87705 -11.72641 -11.17179 -11.03897 -10.54043 -10.09209 -9.72354 -9.51461 -9.01153 -8.51603 -6.22893 0.32462 0.45190 0.96037 1.31299 1.38505 1.45517 1.51571 1.53379 2.04492 2.25126 2.67884 2.86542 3.12711 3.36822 3.58517 3.80796 3.97966 4.10671 4.17634 4.25630 4.32231 4.40268 4.41476 4.52783 4.68476 4.74082 4.82835 4.87234 4.96175 4.98769 5.15523 5.33668 5.70764 5.90392 6.11165 6.31489 6.40110 6.93551 7.05952 8.60554 Molecular weight = 338.04amu Principal moments of inertia in cm(-1) A = 0.036183 B = 0.001752 C = 0.001711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.659744 B =15979.712657 C =16360.672955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.047 3.953 3 Si 0.913 3.087 4 H -0.262 1.262 5 H -0.258 1.258 6 H -0.238 1.238 7 C -0.528 4.528 8 H 0.064 0.936 9 S -0.177 6.177 10 C -0.101 4.101 11 C 0.545 3.455 12 O -0.566 6.566 13 N -0.615 5.615 14 C 0.088 3.912 15 C -0.122 4.122 16 C 0.089 3.911 17 H 0.083 0.917 18 N -0.677 5.677 19 C 0.080 3.920 20 C -0.094 4.094 21 C -0.052 4.052 22 Cl -0.042 7.042 23 Cl -0.043 7.043 24 C 0.114 3.886 25 H 0.277 0.723 26 H 0.111 0.889 27 H 0.111 0.889 28 H 0.085 0.915 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.117 0.883 32 H 0.360 0.640 33 H 0.061 0.939 34 H 0.094 0.906 35 H 0.158 0.842 36 H 0.056 0.944 37 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.217 -25.186 1.037 34.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.159 4.159 3 Si 0.735 3.265 4 H -0.187 1.187 5 H -0.182 1.182 6 H -0.162 1.162 7 C -0.675 4.675 8 H 0.082 0.918 9 S 0.049 5.951 10 C -0.252 4.252 11 C 0.333 3.667 12 O -0.445 6.445 13 N -0.350 5.350 14 C -0.034 4.034 15 C -0.160 4.160 16 C -0.022 4.022 17 H 0.100 0.900 18 N -0.311 5.311 19 C -0.049 4.049 20 C -0.114 4.114 21 C -0.106 4.106 22 Cl -0.014 7.014 23 Cl -0.015 7.015 24 C -0.010 4.010 25 H 0.087 0.913 26 H 0.129 0.871 27 H 0.129 0.871 28 H 0.103 0.897 29 H 0.106 0.894 30 H 0.106 0.894 31 H 0.136 0.864 32 H 0.181 0.819 33 H 0.079 0.921 34 H 0.112 0.888 35 H 0.176 0.824 36 H 0.075 0.925 37 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 24.395 -23.171 1.225 33.667 hybrid contribution -1.141 -0.994 -0.520 1.600 sum 23.254 -24.165 0.705 33.544 Atomic orbital electron populations 1.70015 1.07206 1.29009 1.49059 1.25540 0.95279 1.02174 0.92891 0.85885 0.80668 0.79709 0.80227 1.18681 1.18235 1.16222 1.22433 0.90028 0.96756 1.58331 0.91812 1.84749 1.06687 1.06081 1.97573 1.23196 0.95357 0.99521 1.07106 1.19684 0.89495 0.81835 0.75661 1.90687 1.59492 1.43167 1.51165 1.48361 1.08796 1.04918 1.72896 1.22673 0.95201 0.82755 1.02739 1.22993 0.92015 0.99138 1.01884 1.22409 0.91116 0.92000 0.96654 0.89962 1.60147 1.02385 1.38491 1.30054 1.21270 0.87887 1.02014 0.93714 1.23254 0.94780 0.92589 1.00822 1.24181 0.98440 0.96701 0.91247 1.98418 1.92031 1.74932 1.36049 1.98439 1.51159 1.89841 1.62015 1.22023 0.81125 0.96294 1.01525 0.91347 0.87069 0.87055 0.89671 0.89364 0.89403 0.86448 0.81902 0.92142 0.88822 0.82442 0.92549 0.91840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.55 13.97 21.65 0.30 -55.24 16 2 C 0.05 2.75 5.50 84.86 0.47 3.21 16 3 Si 0.91 45.17 27.74 68.60 1.90 47.08 16 4 H -0.26 -12.65 7.11 99.48 0.71 -11.94 16 5 H -0.26 -11.94 7.11 99.48 0.71 -11.23 16 6 H -0.24 -11.84 6.74 99.48 0.67 -11.17 16 7 C -0.53 -30.79 10.04 67.95 0.68 -30.11 16 8 H 0.06 3.90 8.03 -2.91 -0.02 3.88 16 9 S -0.18 -9.11 18.55 -56.49 -1.05 -10.16 16 10 C -0.10 -3.91 5.17 71.23 0.37 -3.54 16 11 C 0.55 19.88 7.87 87.65 0.69 20.57 16 12 O -0.57 -25.55 16.19 -3.06 -0.05 -25.60 16 13 N -0.61 -15.77 3.33 -811.78 -2.70 -18.47 16 14 C 0.09 1.43 6.69 86.86 0.58 2.01 16 15 C -0.12 -1.18 6.47 31.99 0.21 -0.98 16 16 C 0.09 1.03 3.28 46.11 0.15 1.18 16 17 H 0.08 0.77 7.82 -2.39 -0.02 0.75 16 18 N -0.68 -6.67 6.32 -489.45 -3.09 -9.76 16 19 C 0.08 0.72 5.85 85.56 0.50 1.22 16 20 C -0.09 -0.83 9.51 25.33 0.24 -0.59 16 21 C -0.05 -0.53 6.97 67.46 0.47 -0.06 16 22 Cl -0.04 -0.45 26.92 -2.72 -0.07 -0.53 16 23 Cl -0.04 -0.49 29.06 -2.72 -0.08 -0.57 16 24 C 0.11 2.41 6.63 86.73 0.57 2.99 16 25 H 0.28 15.55 8.31 -92.70 -0.77 14.77 16 26 H 0.11 3.95 8.14 -2.40 -0.02 3.93 16 27 H 0.11 3.96 7.85 -2.39 -0.02 3.95 16 28 H 0.08 1.39 7.49 -2.39 -0.02 1.38 16 29 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.12 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.36 2.47 8.42 -89.69 -0.76 1.71 16 33 H 0.06 0.50 5.95 -2.39 -0.01 0.48 16 34 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.16 1.27 8.06 -2.91 -0.02 1.25 16 36 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.06 1.58 8.03 -2.39 -0.02 1.56 16 Total: -1.00 -73.69 355.78 0.40 -73.29 By element: Atomic # 1 Polarization: 3.76 SS G_CDS: 0.31 Total: 4.06 kcal Atomic # 6 Polarization: -9.03 SS G_CDS: 4.93 Total: -4.10 kcal Atomic # 7 Polarization: -77.98 SS G_CDS: -5.49 Total: -83.47 kcal Atomic # 8 Polarization: -25.55 SS G_CDS: -0.05 Total: -25.60 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 1.90 Total: 47.08 kcal Atomic # 16 Polarization: -9.11 SS G_CDS: -1.05 Total: -10.16 kcal Atomic # 17 Polarization: -0.94 SS G_CDS: -0.15 Total: -1.10 kcal Total: -73.69 0.40 -73.29 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265887994.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.843 kcal (2) G-P(sol) polarization free energy of solvation -73.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds