Wall clock time and date at job start Tue Mar 31 2020 21:08:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86804 * 119.99641 * 2 1 4 4 H 1.48507 * 109.46750 * 270.00020 * 3 2 1 5 5 H 1.48498 * 109.47378 * 29.99212 * 3 2 1 6 6 H 1.48498 * 109.47312 * 149.99690 * 3 2 1 7 7 C 1.38798 * 120.00361 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99860 * 359.97438 * 7 2 1 9 9 S 1.76196 * 119.99865 * 180.02562 * 7 2 1 10 10 C 1.81003 * 100.00034 * 180.02562 * 9 7 2 11 11 C 1.50697 * 109.47327 * 180.02562 * 10 9 7 12 12 O 1.21287 * 119.99944 * 359.97438 * 11 10 9 13 13 N 1.34774 * 119.99922 * 179.97438 * 11 10 9 14 14 C 1.46499 * 119.99790 * 179.97438 * 13 11 10 15 15 C 1.52998 * 109.47140 * 179.97438 * 14 13 11 16 16 C 1.53516 * 114.17057 * 175.00165 * 15 14 13 17 17 N 1.47484 * 87.93094 * 139.67360 * 16 15 14 18 18 C 1.46905 * 110.99905 * 221.29533 * 17 16 15 19 19 C 1.50696 * 109.47013 * 169.99794 * 18 17 16 20 20 Cl 1.73604 * 120.00315 * 295.00291 * 19 18 17 21 21 C 1.31294 * 120.00102 * 115.00270 * 19 18 17 22 22 Cl 1.73599 * 120.00431 * 180.02562 * 21 19 18 23 23 C 1.47473 * 87.83456 * 332.98915 * 17 16 15 24 24 H 0.96998 * 120.00332 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.47294 * 59.99790 * 10 9 7 26 26 H 1.08999 * 109.46661 * 299.99630 * 10 9 7 27 27 H 0.96994 * 120.00297 * 0.02562 * 13 11 10 28 28 H 1.08998 * 109.47519 * 60.00246 * 14 13 11 29 29 H 1.08999 * 109.47470 * 300.00212 * 14 13 11 30 30 H 1.09004 * 113.25932 * 42.05262 * 15 14 13 31 31 H 1.08997 * 113.48090 * 24.90655 * 16 15 14 32 32 H 1.09003 * 113.47525 * 254.43627 * 16 15 14 33 33 H 1.08996 * 109.46983 * 49.99967 * 18 17 16 34 34 H 1.08996 * 109.47314 * 290.00008 * 18 17 16 35 35 H 1.08005 * 119.99707 * 359.72265 * 21 19 18 36 36 H 1.09000 * 113.47660 * 141.77830 * 23 17 16 37 37 H 1.09001 * 113.47945 * 272.24312 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4002 5 1 1.4476 2.6528 0.6998 6 1 3.5477 1.4404 0.7001 7 6 2.0104 -1.2020 0.0005 8 1 1.4704 -2.1373 0.0014 9 16 3.7723 -1.2018 0.0012 10 6 4.0868 -2.9843 0.0009 11 6 5.5732 -3.2322 0.0021 12 8 6.3442 -2.2959 0.0025 13 7 6.0459 -4.4944 0.0026 14 6 7.4910 -4.7353 0.0032 15 6 7.7568 -6.2420 0.0044 16 6 9.2400 -6.6187 -0.1170 17 7 8.9969 -7.6797 0.8782 18 6 10.1017 -7.7595 1.8432 19 6 9.7133 -8.6729 2.9771 20 17 8.4084 -8.2363 4.0356 21 6 10.3617 -9.7991 3.1644 22 17 9.9139 -10.8518 4.4702 23 6 7.8935 -6.8552 1.4050 24 1 -0.4850 0.8400 -0.0004 25 1 3.6442 -3.4312 -0.8893 26 1 3.6436 -3.4315 0.8907 27 1 5.4294 -5.2432 0.0019 28 1 7.9336 -4.2880 0.8932 29 1 7.9342 -4.2885 -0.8867 30 1 7.0994 -6.7956 -0.6662 31 1 9.9162 -5.8397 0.2352 32 1 9.5119 -7.0006 -1.1011 33 1 10.3147 -6.7648 2.2347 34 1 10.9893 -8.1526 1.3476 35 1 11.1706 -10.0729 2.5032 36 1 7.0242 -7.4373 1.7110 37 1 8.2102 -6.1392 2.1634 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268511004.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:08:55 Heat of formation + Delta-G solvation = 0.952659 kcal Electronic energy + Delta-G solvation = -21077.847757 eV Core-core repulsion = 17455.768189 eV Total energy + Delta-G solvation = -3622.079567 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 338.036 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.92634 -39.12027 -37.69450 -36.83998 -35.06957 -33.91372 -32.44119 -30.88170 -29.22293 -26.56939 -26.45328 -25.59246 -23.21858 -20.83651 -20.72145 -19.95996 -17.93912 -17.15771 -16.59551 -16.36177 -16.30867 -15.98886 -15.34643 -15.04862 -14.84502 -14.38039 -13.97250 -13.70769 -13.43479 -13.27648 -13.12570 -12.97061 -12.80153 -12.45242 -12.07525 -12.00429 -11.78247 -11.55503 -11.31524 -11.29646 -11.24089 -11.01241 -10.72964 -10.60712 -9.86761 -9.68715 -9.51649 -9.36059 -9.03164 -8.97520 -8.50721 -6.92317 -6.29114 -4.00962 0.95392 1.41719 1.84774 2.74857 2.95664 3.27240 3.33112 3.46465 3.50030 3.61132 3.88908 4.13473 4.23332 4.32806 4.46374 4.69079 4.71537 4.79258 4.86898 4.91934 4.96061 5.09862 5.18662 5.22420 5.27498 5.31910 5.43462 5.58550 5.65775 5.76532 5.84892 6.01217 6.37999 6.49939 7.58340 7.93918 8.41593 8.46823 9.16998 10.80076 Molecular weight = 338.04amu Principal moments of inertia in cm(-1) A = 0.025083 B = 0.001831 C = 0.001759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.046409 B =15287.747638 C =15917.186005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.095 3.905 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.521 4.521 8 H 0.088 0.912 9 S -0.143 6.143 10 C -0.124 4.124 11 C 0.531 3.469 12 O -0.521 6.521 13 N -0.735 5.735 14 C 0.133 3.867 15 C -0.128 4.128 16 C 0.009 3.991 17 N -0.467 5.467 18 C 0.060 3.940 19 C -0.059 4.059 20 Cl -0.054 7.054 21 C -0.092 4.092 22 Cl -0.067 7.067 23 C 0.002 3.998 24 H 0.271 0.729 25 H 0.097 0.903 26 H 0.097 0.903 27 H 0.401 0.599 28 H 0.067 0.933 29 H 0.071 0.929 30 H 0.112 0.888 31 H 0.077 0.923 32 H 0.093 0.907 33 H 0.069 0.931 34 H 0.102 0.898 35 H 0.168 0.832 36 H 0.091 0.909 37 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.589 -22.323 4.214 32.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.114 4.114 3 Si 0.682 3.318 4 H -0.192 1.192 5 H -0.200 1.200 6 H -0.159 1.159 7 C -0.669 4.669 8 H 0.106 0.894 9 S 0.084 5.916 10 C -0.275 4.275 11 C 0.316 3.684 12 O -0.395 6.395 13 N -0.390 5.390 14 C 0.008 3.992 15 C -0.147 4.147 16 C -0.120 4.120 17 N -0.188 5.188 18 C -0.069 4.069 19 C -0.088 4.088 20 Cl -0.025 7.025 21 C -0.138 4.138 22 Cl -0.039 7.039 23 C -0.127 4.127 24 H 0.081 0.919 25 H 0.115 0.885 26 H 0.116 0.884 27 H 0.235 0.765 28 H 0.085 0.915 29 H 0.089 0.911 30 H 0.130 0.870 31 H 0.095 0.905 32 H 0.112 0.888 33 H 0.087 0.913 34 H 0.120 0.880 35 H 0.185 0.815 36 H 0.109 0.891 37 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 24.483 -21.412 4.236 32.800 hybrid contribution -0.958 -0.033 0.495 1.079 sum 23.525 -21.445 4.731 32.182 Atomic orbital electron populations 1.69937 1.05905 1.27763 1.48058 1.24720 0.94459 0.98974 0.93200 0.86731 0.81884 0.83283 0.79924 1.19208 1.19953 1.15940 1.22315 0.88260 0.97544 1.58772 0.89367 1.84781 1.09302 1.00114 1.97431 1.23279 0.94011 1.04355 1.05846 1.20289 0.90609 0.82274 0.75184 1.90701 1.58814 1.42238 1.47797 1.45931 1.07289 1.08098 1.77671 1.21232 0.82002 0.93458 1.02501 1.23017 0.97674 0.95600 0.98402 1.23840 0.96373 0.93322 0.98494 1.69096 1.05320 1.35413 1.09008 1.21762 0.96346 0.98097 0.90654 1.23356 0.93112 0.96938 0.95372 1.98422 1.47468 1.92914 1.63734 1.24563 1.02270 0.91983 0.95009 1.98403 1.91991 1.65660 1.47801 1.24095 0.96543 0.95711 0.96318 0.91942 0.88458 0.88445 0.76525 0.91522 0.91080 0.87009 0.90486 0.88816 0.91266 0.87981 0.81518 0.89051 0.90413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.52 13.97 55.49 0.78 -25.74 16 2 C 0.10 2.78 5.50 -17.43 -0.10 2.68 16 3 Si 0.86 21.74 27.74 -169.99 -4.72 17.03 16 4 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.24 -5.96 6.74 56.52 0.38 -5.58 16 7 C -0.52 -14.97 10.04 30.94 0.31 -14.66 16 8 H 0.09 2.64 8.03 -52.49 -0.42 2.22 16 9 S -0.14 -3.59 18.55 -107.50 -1.99 -5.59 16 10 C -0.12 -2.36 6.16 36.00 0.22 -2.13 16 11 C 0.53 9.10 7.85 -10.99 -0.09 9.01 16 12 O -0.52 -10.98 15.86 5.55 0.09 -10.89 16 13 N -0.74 -8.65 5.56 -60.30 -0.33 -8.98 16 14 C 0.13 1.28 5.58 -4.04 -0.02 1.26 16 15 C -0.13 -0.86 4.09 -90.09 -0.37 -1.23 16 16 C 0.01 0.05 7.29 -7.55 -0.06 -0.01 16 17 N -0.47 -3.05 6.40 -246.10 -1.58 -4.62 16 18 C 0.06 0.32 5.21 -4.97 -0.03 0.29 16 19 C -0.06 -0.39 6.03 -36.10 -0.22 -0.60 16 20 Cl -0.05 -0.45 25.67 -51.86 -1.33 -1.78 16 21 C -0.09 -0.52 10.43 28.94 0.30 -0.22 16 22 Cl -0.07 -0.48 27.92 -51.86 -1.45 -1.93 16 23 C 0.00 0.01 5.36 -7.56 -0.04 -0.03 16 24 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 25 H 0.10 1.71 8.14 -51.92 -0.42 1.29 16 26 H 0.10 1.72 8.14 -51.92 -0.42 1.30 16 27 H 0.40 3.64 8.47 -40.82 -0.35 3.29 16 28 H 0.07 0.70 7.81 -51.93 -0.41 0.30 16 29 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.11 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.08 0.38 7.73 -51.93 -0.40 -0.02 16 32 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.07 0.35 7.56 -51.93 -0.39 -0.05 16 34 H 0.10 0.35 7.80 -51.93 -0.40 -0.06 16 35 H 0.17 0.49 7.85 -52.48 -0.41 0.08 16 36 H 0.09 0.72 7.96 -51.93 -0.41 0.30 16 37 H 0.08 0.59 7.25 -51.93 -0.38 0.21 16 LS Contribution 355.64 15.07 5.36 5.36 Total: -1.00 -34.10 355.64 -10.10 -44.20 By element: Atomic # 1 Polarization: 3.43 SS G_CDS: -4.84 Total: -1.41 kcal Atomic # 6 Polarization: -5.56 SS G_CDS: -0.08 Total: -5.64 kcal Atomic # 7 Polarization: -38.21 SS G_CDS: -1.14 Total: -39.35 kcal Atomic # 8 Polarization: -10.98 SS G_CDS: 0.09 Total: -10.89 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.72 Total: 17.03 kcal Atomic # 16 Polarization: -3.59 SS G_CDS: -1.99 Total: -5.59 kcal Atomic # 17 Polarization: -0.93 SS G_CDS: -2.78 Total: -3.71 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -34.10 -10.10 -44.20 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268511004.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.151 kcal (2) G-P(sol) polarization free energy of solvation -34.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.199 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds