Wall clock time and date at job start Tue Mar 31 2020 21:08:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86804 * 119.99641 * 2 1 4 4 H 1.48507 * 109.46750 * 270.00020 * 3 2 1 5 5 H 1.48498 * 109.47378 * 29.99212 * 3 2 1 6 6 H 1.48498 * 109.47312 * 149.99690 * 3 2 1 7 7 C 1.38798 * 120.00361 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99860 * 359.97438 * 7 2 1 9 9 S 1.76196 * 119.99865 * 180.02562 * 7 2 1 10 10 C 1.81003 * 100.00034 * 180.02562 * 9 7 2 11 11 C 1.50697 * 109.47327 * 180.02562 * 10 9 7 12 12 O 1.21287 * 119.99944 * 359.97438 * 11 10 9 13 13 N 1.34774 * 119.99922 * 179.97438 * 11 10 9 14 14 C 1.46499 * 119.99790 * 179.97438 * 13 11 10 15 15 C 1.52998 * 109.47140 * 179.97438 * 14 13 11 16 16 C 1.53516 * 114.17057 * 175.00165 * 15 14 13 17 17 N 1.47484 * 87.93094 * 139.67360 * 16 15 14 18 18 C 1.46905 * 110.99905 * 221.29533 * 17 16 15 19 19 C 1.50696 * 109.47013 * 169.99794 * 18 17 16 20 20 Cl 1.73604 * 120.00315 * 295.00291 * 19 18 17 21 21 C 1.31294 * 120.00102 * 115.00270 * 19 18 17 22 22 Cl 1.73599 * 120.00431 * 180.02562 * 21 19 18 23 23 C 1.47473 * 87.83456 * 332.98915 * 17 16 15 24 24 H 0.96998 * 120.00332 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.47294 * 59.99790 * 10 9 7 26 26 H 1.08999 * 109.46661 * 299.99630 * 10 9 7 27 27 H 0.96994 * 120.00297 * 0.02562 * 13 11 10 28 28 H 1.08998 * 109.47519 * 60.00246 * 14 13 11 29 29 H 1.08999 * 109.47470 * 300.00212 * 14 13 11 30 30 H 1.09004 * 113.25932 * 42.05262 * 15 14 13 31 31 H 1.08997 * 113.48090 * 24.90655 * 16 15 14 32 32 H 1.09003 * 113.47525 * 254.43627 * 16 15 14 33 33 H 1.08996 * 109.46983 * 49.99967 * 18 17 16 34 34 H 1.08996 * 109.47314 * 290.00008 * 18 17 16 35 35 H 1.08005 * 119.99707 * 359.72265 * 21 19 18 36 36 H 1.09000 * 113.47660 * 141.77830 * 23 17 16 37 37 H 1.09001 * 113.47945 * 272.24312 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4002 5 1 1.4476 2.6528 0.6998 6 1 3.5477 1.4404 0.7001 7 6 2.0104 -1.2020 0.0005 8 1 1.4704 -2.1373 0.0014 9 16 3.7723 -1.2018 0.0012 10 6 4.0868 -2.9843 0.0009 11 6 5.5732 -3.2322 0.0021 12 8 6.3442 -2.2959 0.0025 13 7 6.0459 -4.4944 0.0026 14 6 7.4910 -4.7353 0.0032 15 6 7.7568 -6.2420 0.0044 16 6 9.2400 -6.6187 -0.1170 17 7 8.9969 -7.6797 0.8782 18 6 10.1017 -7.7595 1.8432 19 6 9.7133 -8.6729 2.9771 20 17 8.4084 -8.2363 4.0356 21 6 10.3617 -9.7991 3.1644 22 17 9.9139 -10.8518 4.4702 23 6 7.8935 -6.8552 1.4050 24 1 -0.4850 0.8400 -0.0004 25 1 3.6442 -3.4312 -0.8893 26 1 3.6436 -3.4315 0.8907 27 1 5.4294 -5.2432 0.0019 28 1 7.9336 -4.2880 0.8932 29 1 7.9342 -4.2885 -0.8867 30 1 7.0994 -6.7956 -0.6662 31 1 9.9162 -5.8397 0.2352 32 1 9.5119 -7.0006 -1.1011 33 1 10.3147 -6.7648 2.2347 34 1 10.9893 -8.1526 1.3476 35 1 11.1706 -10.0729 2.5032 36 1 7.0242 -7.4373 1.7110 37 1 8.2102 -6.1392 2.1634 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268511004.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:08:54 Heat of formation + Delta-G solvation = -24.466733 kcal Electronic energy + Delta-G solvation = -21078.950024 eV Core-core repulsion = 17455.768189 eV Total energy + Delta-G solvation = -3623.181835 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 338.036 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.50061 -40.38840 -38.21176 -37.36130 -36.00019 -34.67428 -34.59038 -31.89846 -30.25991 -27.89789 -27.24080 -26.94790 -23.85183 -21.90559 -21.23566 -20.72811 -19.81922 -18.00099 -17.67368 -17.24255 -17.04288 -17.02803 -16.63535 -16.39551 -15.90806 -15.51328 -15.10283 -14.90918 -14.55637 -14.41275 -14.11404 -13.68823 -13.60132 -13.35582 -13.30103 -13.00224 -12.94138 -12.68666 -12.61583 -12.38331 -12.12084 -11.88444 -11.83566 -11.78076 -11.29241 -11.16724 -10.98205 -10.53197 -10.19715 -10.05742 -9.82649 -8.98959 -8.51134 -6.21886 0.50390 0.92526 1.00023 1.31733 1.40548 1.47301 1.56849 1.58179 2.23159 2.27357 2.72288 2.86990 2.98217 3.33972 3.66147 3.69860 3.89653 4.06902 4.22487 4.25308 4.26226 4.35532 4.48772 4.49314 4.58953 4.60305 4.72417 4.78272 4.84444 4.89674 5.17224 5.20942 5.46243 5.71067 5.91983 6.11932 6.48269 6.93976 7.20865 8.61187 Molecular weight = 338.04amu Principal moments of inertia in cm(-1) A = 0.025083 B = 0.001831 C = 0.001759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.046409 B =15287.747638 C =15917.186005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.044 3.956 3 Si 0.915 3.085 4 H -0.262 1.262 5 H -0.260 1.260 6 H -0.237 1.237 7 C -0.529 4.529 8 H 0.062 0.938 9 S -0.176 6.176 10 C -0.113 4.113 11 C 0.535 3.465 12 O -0.564 6.564 13 N -0.710 5.710 14 C 0.134 3.866 15 C -0.118 4.118 16 C 0.016 3.984 17 N -0.474 5.474 18 C 0.061 3.939 19 C -0.071 4.071 20 Cl -0.078 7.078 21 C -0.084 4.084 22 Cl -0.085 7.085 23 C 0.002 3.998 24 H 0.277 0.723 25 H 0.114 0.886 26 H 0.112 0.888 27 H 0.417 0.583 28 H 0.060 0.940 29 H 0.069 0.931 30 H 0.120 0.880 31 H 0.085 0.915 32 H 0.106 0.894 33 H 0.072 0.928 34 H 0.126 0.874 35 H 0.198 0.802 36 H 0.082 0.918 37 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.722 -23.356 3.607 34.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.161 4.161 3 Si 0.737 3.263 4 H -0.186 1.186 5 H -0.184 1.184 6 H -0.161 1.161 7 C -0.677 4.677 8 H 0.080 0.920 9 S 0.050 5.950 10 C -0.263 4.263 11 C 0.320 3.680 12 O -0.443 6.443 13 N -0.364 5.364 14 C 0.010 3.990 15 C -0.137 4.137 16 C -0.113 4.113 17 N -0.196 5.196 18 C -0.067 4.067 19 C -0.099 4.099 20 Cl -0.050 7.050 21 C -0.130 4.130 22 Cl -0.056 7.056 23 C -0.127 4.127 24 H 0.086 0.914 25 H 0.132 0.868 26 H 0.130 0.870 27 H 0.254 0.746 28 H 0.078 0.922 29 H 0.087 0.913 30 H 0.138 0.862 31 H 0.104 0.896 32 H 0.124 0.876 33 H 0.090 0.910 34 H 0.144 0.856 35 H 0.215 0.785 36 H 0.101 0.899 37 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 26.615 -22.508 3.630 35.045 hybrid contribution -1.561 0.083 0.676 1.703 sum 25.054 -22.424 4.306 33.898 Atomic orbital electron populations 1.70017 1.07306 1.29011 1.49159 1.25586 0.95299 1.02317 0.92928 0.85853 0.80655 0.79538 0.80235 1.18629 1.18415 1.16052 1.22467 0.90313 0.96677 1.58206 0.91975 1.84689 1.06353 1.06336 1.97586 1.23282 0.96118 0.99507 1.07433 1.19923 0.89297 0.83459 0.75301 1.90690 1.59305 1.43884 1.50395 1.45738 1.08865 1.06679 1.75135 1.21372 0.80014 0.95565 1.02086 1.22938 0.99075 0.93246 0.98480 1.23855 0.95303 0.93251 0.98913 1.69084 1.05605 1.35472 1.09424 1.21849 0.96592 0.98159 0.90105 1.23594 0.92884 0.97708 0.95732 1.98417 1.48796 1.93125 1.64662 1.24999 1.02482 0.91161 0.94387 1.98405 1.92197 1.66162 1.48847 1.24034 0.96752 0.95654 0.96236 0.91387 0.86802 0.86965 0.74643 0.92183 0.91290 0.86192 0.89644 0.87622 0.91012 0.85572 0.78512 0.89942 0.91001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.86 13.97 21.65 0.30 -55.56 16 2 C 0.04 2.59 5.50 84.86 0.47 3.05 16 3 Si 0.92 44.95 27.74 68.60 1.90 46.85 16 4 H -0.26 -12.51 7.11 99.48 0.71 -11.80 16 5 H -0.26 -11.98 7.11 99.48 0.71 -11.27 16 6 H -0.24 -11.59 6.74 99.48 0.67 -10.92 16 7 C -0.53 -30.75 10.04 67.95 0.68 -30.07 16 8 H 0.06 3.81 8.03 -2.91 -0.02 3.78 16 9 S -0.18 -8.84 18.55 -56.49 -1.05 -9.89 16 10 C -0.11 -4.14 6.16 71.23 0.44 -3.70 16 11 C 0.53 17.61 7.85 87.66 0.69 18.30 16 12 O -0.56 -23.37 15.86 -3.05 -0.05 -23.42 16 13 N -0.71 -15.25 5.56 -463.07 -2.57 -17.82 16 14 C 0.13 2.31 5.58 86.38 0.48 2.79 16 15 C -0.12 -1.31 4.09 -10.45 -0.04 -1.35 16 16 C 0.02 0.13 7.29 83.57 0.61 0.74 16 17 N -0.47 -4.97 6.40 -932.53 -5.97 -10.94 16 18 C 0.06 0.48 5.21 85.55 0.45 0.93 16 19 C -0.07 -0.79 6.03 25.36 0.15 -0.64 16 20 Cl -0.08 -1.25 25.67 -2.72 -0.07 -1.32 16 21 C -0.08 -0.77 10.43 67.49 0.70 -0.07 16 22 Cl -0.08 -1.13 27.92 -2.72 -0.08 -1.21 16 23 C 0.00 0.03 5.36 83.57 0.45 0.47 16 24 H 0.28 15.58 8.31 -92.71 -0.77 14.81 16 25 H 0.11 3.83 8.14 -2.40 -0.02 3.81 16 26 H 0.11 3.81 8.14 -2.40 -0.02 3.79 16 27 H 0.42 6.47 8.47 -92.71 -0.79 5.68 16 28 H 0.06 1.17 7.81 -2.39 -0.02 1.15 16 29 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.12 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.09 0.58 7.73 -2.39 -0.02 0.57 16 32 H 0.11 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.07 0.55 7.56 -2.39 -0.02 0.53 16 34 H 0.13 0.39 7.80 -2.39 -0.02 0.37 16 35 H 0.20 0.50 7.85 -2.91 -0.02 0.48 16 36 H 0.08 1.19 7.96 -2.39 -0.02 1.17 16 37 H 0.07 0.99 7.25 -2.39 -0.02 0.97 16 Total: -1.00 -74.38 355.64 -2.23 -76.61 By element: Atomic # 1 Polarization: 5.95 SS G_CDS: 0.27 Total: 6.23 kcal Atomic # 6 Polarization: -14.61 SS G_CDS: 5.08 Total: -9.54 kcal Atomic # 7 Polarization: -76.07 SS G_CDS: -8.24 Total: -84.32 kcal Atomic # 8 Polarization: -23.37 SS G_CDS: -0.05 Total: -23.42 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 1.90 Total: 46.85 kcal Atomic # 16 Polarization: -8.84 SS G_CDS: -1.05 Total: -9.89 kcal Atomic # 17 Polarization: -2.38 SS G_CDS: -0.15 Total: -2.53 kcal Total: -74.38 -2.23 -76.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268511004.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.145 kcal (2) G-P(sol) polarization free energy of solvation -74.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds