Wall clock time and date at job start Tue Mar 31 2020 21:08:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86799 * 120.00065 * 2 1 4 4 H 1.48497 * 109.47045 * 269.99695 * 3 2 1 5 5 H 1.48492 * 109.47169 * 30.00261 * 3 2 1 6 6 H 1.48502 * 109.46978 * 149.99969 * 3 2 1 7 7 C 1.38798 * 119.99750 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00105 * 180.02562 * 7 2 1 9 9 S 1.76202 * 119.99981 * 359.97438 * 7 2 1 10 10 C 1.80998 * 100.00022 * 179.97438 * 9 7 2 11 11 C 1.50704 * 109.47160 * 179.97438 * 10 9 7 12 12 O 1.21279 * 119.99797 * 0.02562 * 11 10 9 13 13 N 1.34774 * 119.99685 * 180.02562 * 11 10 9 14 14 C 1.46505 * 119.99706 * 180.02562 * 13 11 10 15 15 C 1.53004 * 109.47005 * 180.02562 * 14 13 11 16 16 C 1.53506 * 114.16773 * 174.99914 * 15 14 13 17 17 N 1.47479 * 87.93410 * 139.67343 * 16 15 14 18 18 C 1.46903 * 111.00186 * 221.29870 * 17 16 15 19 19 C 1.50694 * 109.47181 * 169.99499 * 18 17 16 20 20 Cl 1.73601 * 120.00409 * 295.00023 * 19 18 17 21 21 C 1.31294 * 119.99873 * 114.99981 * 19 18 17 22 22 Cl 1.73598 * 120.00173 * 359.97438 * 21 19 18 23 23 C 1.47483 * 87.83035 * 332.98951 * 17 16 15 24 24 H 0.97006 * 120.00039 * 359.97438 * 1 2 3 25 25 H 1.09008 * 109.46925 * 60.00667 * 10 9 7 26 26 H 1.08990 * 109.47326 * 300.00416 * 10 9 7 27 27 H 0.97000 * 120.00503 * 0.02562 * 13 11 10 28 28 H 1.08995 * 109.47063 * 59.99845 * 14 13 11 29 29 H 1.09000 * 109.47245 * 299.99941 * 14 13 11 30 30 H 1.08996 * 113.25235 * 42.05085 * 15 14 13 31 31 H 1.09003 * 113.47905 * 24.90572 * 16 15 14 32 32 H 1.09000 * 113.47643 * 254.43710 * 16 15 14 33 33 H 1.08997 * 109.46893 * 49.99444 * 18 17 16 34 34 H 1.09001 * 109.46929 * 289.99457 * 18 17 16 35 35 H 1.08009 * 120.00112 * 179.72886 * 21 19 18 36 36 H 1.09002 * 113.47765 * 141.78071 * 23 17 16 37 37 H 1.09005 * 113.47593 * 272.24113 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0463 -1.4000 5 1 1.4479 2.6526 0.7001 6 1 3.5479 1.4401 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 16 1.1292 -2.7280 -0.0005 10 6 2.5156 -3.8915 -0.0021 11 6 1.9871 -5.3028 -0.0017 12 8 0.7908 -5.5023 -0.0009 13 7 2.8439 -6.3432 -0.0022 14 6 2.3300 -7.7152 -0.0024 15 6 3.5021 -8.6987 -0.0023 16 6 3.0867 -10.1714 0.1196 17 7 4.1276 -10.4919 -0.8748 18 6 3.6449 -11.4891 -1.8395 19 6 4.6309 -11.6101 -2.9727 20 17 4.9058 -10.2623 -4.0318 21 6 5.2820 -12.7348 -3.1590 22 17 5.0077 -14.0824 -2.0996 23 6 3.9655 -9.1243 -1.4025 24 1 -0.4850 0.8401 0.0004 25 1 3.1249 -3.7319 0.8876 26 1 3.1236 -3.7310 -0.8924 27 1 3.8006 -6.1836 -0.0025 28 1 1.7212 -7.8750 -0.8922 29 1 1.7217 -7.8754 0.8877 30 1 4.3096 -8.4057 0.6685 31 1 2.0741 -10.3677 -0.2331 32 1 3.2808 -10.5973 1.1040 33 1 2.6772 -11.1764 -2.2317 34 1 3.5413 -12.4541 -1.3434 35 1 5.9855 -12.8230 -3.9739 36 1 4.9044 -8.6627 -1.7081 37 1 3.1875 -9.0411 -2.1614 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268511027.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:08:58 Heat of formation + Delta-G solvation = 3.028395 kcal Electronic energy + Delta-G solvation = -21096.934367 eV Core-core repulsion = 17474.944810 eV Total energy + Delta-G solvation = -3621.989557 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 338.036 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.84298 -38.98976 -37.77261 -37.09993 -34.90712 -33.75665 -32.42713 -30.81350 -29.13384 -26.54725 -26.38211 -25.44972 -23.17502 -20.70313 -20.57214 -19.85524 -17.90162 -17.24396 -16.50791 -16.29876 -16.26417 -15.92804 -15.24483 -14.84812 -14.79523 -14.29534 -13.94110 -13.71145 -13.39522 -13.12542 -13.09861 -12.85711 -12.61490 -12.48765 -12.27505 -11.96502 -11.75884 -11.66596 -11.21957 -11.06564 -11.03700 -11.02298 -10.75955 -10.66843 -9.81923 -9.62642 -9.40714 -9.30462 -9.06984 -8.88340 -8.23542 -6.49912 -6.21618 -3.92129 0.93649 1.02417 2.25230 3.01968 3.09864 3.22446 3.27794 3.31732 3.52328 3.65523 3.84952 4.13544 4.20575 4.32940 4.58787 4.78350 4.84613 4.92229 5.03314 5.12222 5.13547 5.18701 5.26371 5.28019 5.36537 5.47679 5.60010 5.70860 5.75975 5.89601 5.94291 6.14529 6.47429 6.61165 7.59704 7.70482 8.35345 8.61108 9.23735 10.85788 Molecular weight = 338.04amu Principal moments of inertia in cm(-1) A = 0.027939 B = 0.001780 C = 0.001717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.955084 B =15725.477099 C =16299.620921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.535 4.535 8 H 0.073 0.927 9 S -0.061 6.061 10 C -0.153 4.153 11 C 0.531 3.469 12 O -0.519 6.519 13 N -0.737 5.737 14 C 0.133 3.867 15 C -0.127 4.127 16 C 0.009 3.991 17 N -0.463 5.463 18 C 0.044 3.956 19 C -0.055 4.055 20 Cl -0.047 7.047 21 C -0.090 4.090 22 Cl -0.059 7.059 23 C 0.001 3.999 24 H 0.268 0.732 25 H 0.090 0.910 26 H 0.089 0.911 27 H 0.399 0.601 28 H 0.066 0.934 29 H 0.070 0.930 30 H 0.111 0.889 31 H 0.077 0.923 32 H 0.093 0.907 33 H 0.067 0.933 34 H 0.109 0.891 35 H 0.159 0.841 36 H 0.090 0.910 37 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.343 -28.242 -4.927 31.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.683 4.683 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.304 4.304 11 C 0.317 3.683 12 O -0.393 6.393 13 N -0.392 5.392 14 C 0.008 3.992 15 C -0.146 4.146 16 C -0.120 4.120 17 N -0.185 5.185 18 C -0.085 4.085 19 C -0.083 4.083 20 Cl -0.019 7.019 21 C -0.137 4.137 22 Cl -0.031 7.031 23 C -0.128 4.128 24 H 0.078 0.922 25 H 0.108 0.892 26 H 0.108 0.892 27 H 0.233 0.767 28 H 0.084 0.916 29 H 0.089 0.911 30 H 0.129 0.871 31 H 0.095 0.905 32 H 0.111 0.889 33 H 0.085 0.915 34 H 0.127 0.873 35 H 0.177 0.823 36 H 0.108 0.892 37 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 10.812 -28.758 -4.734 31.086 hybrid contribution 1.724 1.520 -0.498 2.351 sum 12.536 -27.238 -5.232 30.438 Atomic orbital electron populations 1.70022 1.05946 1.27438 1.46883 1.24996 0.95037 0.99039 0.94553 0.86164 0.79410 0.81559 0.78339 1.20285 1.20755 1.19693 1.22869 0.94913 0.91652 1.58913 0.90918 1.85393 1.04989 0.96348 1.96719 1.23530 1.06544 0.95397 1.04936 1.20314 0.86513 0.86315 0.75108 1.90701 1.15401 1.85639 1.47566 1.45974 1.09980 1.05324 1.77930 1.21224 0.94944 0.80583 1.02468 1.23006 0.98950 0.94336 0.98327 1.23830 0.95074 0.94586 0.98539 1.69090 1.37529 1.02901 1.08952 1.22015 0.94649 1.00624 0.91185 1.23081 1.00398 0.89590 0.95238 1.98425 1.95349 1.44289 1.63824 1.24359 1.02219 0.88755 0.98371 1.98386 1.95260 1.44213 1.65224 1.24097 1.02293 0.90020 0.96368 0.92195 0.89204 0.89229 0.76724 0.91578 0.91141 0.87098 0.90530 0.88876 0.91545 0.87271 0.82320 0.89199 0.90511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.15 13.22 55.49 0.73 -25.42 16 2 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 3 Si 0.92 21.39 29.55 -169.99 -5.02 16.37 16 4 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 6 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 7 C -0.54 -15.23 9.50 30.94 0.29 -14.94 16 8 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 9 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 10 C -0.15 -3.06 6.16 36.01 0.22 -2.84 16 11 C 0.53 9.73 7.85 -10.98 -0.09 9.64 16 12 O -0.52 -11.66 15.86 5.56 0.09 -11.57 16 13 N -0.74 -9.34 5.56 -60.29 -0.33 -9.68 16 14 C 0.13 1.41 5.58 -4.04 -0.02 1.38 16 15 C -0.13 -0.97 4.09 -90.10 -0.37 -1.33 16 16 C 0.01 0.06 7.29 -7.56 -0.06 0.00 16 17 N -0.46 -3.52 6.40 -246.13 -1.58 -5.10 16 18 C 0.04 0.30 5.07 -4.98 -0.03 0.27 16 19 C -0.05 -0.38 6.03 -36.10 -0.22 -0.60 16 20 Cl -0.05 -0.36 26.85 -51.86 -1.39 -1.75 16 21 C -0.09 -0.54 10.54 28.94 0.31 -0.23 16 22 Cl -0.06 -0.37 26.97 -51.86 -1.40 -1.77 16 23 C 0.00 0.01 5.36 -7.56 -0.04 -0.03 16 24 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 25 H 0.09 1.65 8.14 -51.91 -0.42 1.23 16 26 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 27 H 0.40 3.92 8.47 -40.82 -0.35 3.58 16 28 H 0.07 0.76 7.81 -51.93 -0.41 0.36 16 29 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.11 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.08 0.48 7.73 -51.93 -0.40 0.07 16 32 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.43 7.56 -51.93 -0.39 0.04 16 34 H 0.11 0.71 6.01 -51.93 -0.31 0.39 16 35 H 0.16 0.69 8.06 -52.48 -0.42 0.27 16 36 H 0.09 0.73 7.96 -51.93 -0.41 0.31 16 37 H 0.08 0.63 7.25 -51.93 -0.38 0.25 16 LS Contribution 356.94 15.07 5.38 5.38 Total: -1.00 -33.90 356.94 -10.56 -44.46 By element: Atomic # 1 Polarization: 4.36 SS G_CDS: -4.73 Total: -0.37 kcal Atomic # 6 Polarization: -6.60 SS G_CDS: -0.09 Total: -6.69 kcal Atomic # 7 Polarization: -39.02 SS G_CDS: -1.18 Total: -40.20 kcal Atomic # 8 Polarization: -11.66 SS G_CDS: 0.09 Total: -11.57 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Atomic # 17 Polarization: -0.73 SS G_CDS: -2.79 Total: -3.52 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -33.90 -10.56 -44.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268511027.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.486 kcal (2) G-P(sol) polarization free energy of solvation -33.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.458 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds