Wall clock time and date at job start Tue Mar 31 2020 21:08:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86799 * 120.00065 * 2 1 4 4 H 1.48497 * 109.47045 * 269.99695 * 3 2 1 5 5 H 1.48492 * 109.47169 * 30.00261 * 3 2 1 6 6 H 1.48502 * 109.46978 * 149.99969 * 3 2 1 7 7 C 1.38798 * 119.99750 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00105 * 180.02562 * 7 2 1 9 9 S 1.76202 * 119.99981 * 359.97438 * 7 2 1 10 10 C 1.80998 * 100.00022 * 179.97438 * 9 7 2 11 11 C 1.50704 * 109.47160 * 179.97438 * 10 9 7 12 12 O 1.21279 * 119.99797 * 0.02562 * 11 10 9 13 13 N 1.34774 * 119.99685 * 180.02562 * 11 10 9 14 14 C 1.46505 * 119.99706 * 180.02562 * 13 11 10 15 15 C 1.53004 * 109.47005 * 180.02562 * 14 13 11 16 16 C 1.53506 * 114.16773 * 174.99914 * 15 14 13 17 17 N 1.47479 * 87.93410 * 139.67343 * 16 15 14 18 18 C 1.46903 * 111.00186 * 221.29870 * 17 16 15 19 19 C 1.50694 * 109.47181 * 169.99499 * 18 17 16 20 20 Cl 1.73601 * 120.00409 * 295.00023 * 19 18 17 21 21 C 1.31294 * 119.99873 * 114.99981 * 19 18 17 22 22 Cl 1.73598 * 120.00173 * 359.97438 * 21 19 18 23 23 C 1.47483 * 87.83035 * 332.98951 * 17 16 15 24 24 H 0.97006 * 120.00039 * 359.97438 * 1 2 3 25 25 H 1.09008 * 109.46925 * 60.00667 * 10 9 7 26 26 H 1.08990 * 109.47326 * 300.00416 * 10 9 7 27 27 H 0.97000 * 120.00503 * 0.02562 * 13 11 10 28 28 H 1.08995 * 109.47063 * 59.99845 * 14 13 11 29 29 H 1.09000 * 109.47245 * 299.99941 * 14 13 11 30 30 H 1.08996 * 113.25235 * 42.05085 * 15 14 13 31 31 H 1.09003 * 113.47905 * 24.90572 * 16 15 14 32 32 H 1.09000 * 113.47643 * 254.43710 * 16 15 14 33 33 H 1.08997 * 109.46893 * 49.99444 * 18 17 16 34 34 H 1.09001 * 109.46929 * 289.99457 * 18 17 16 35 35 H 1.08009 * 120.00112 * 179.72886 * 21 19 18 36 36 H 1.09002 * 113.47765 * 141.78071 * 23 17 16 37 37 H 1.09005 * 113.47593 * 272.24113 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0463 -1.4000 5 1 1.4479 2.6526 0.7001 6 1 3.5479 1.4401 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 16 1.1292 -2.7280 -0.0005 10 6 2.5156 -3.8915 -0.0021 11 6 1.9871 -5.3028 -0.0017 12 8 0.7908 -5.5023 -0.0009 13 7 2.8439 -6.3432 -0.0022 14 6 2.3300 -7.7152 -0.0024 15 6 3.5021 -8.6987 -0.0023 16 6 3.0867 -10.1714 0.1196 17 7 4.1276 -10.4919 -0.8748 18 6 3.6449 -11.4891 -1.8395 19 6 4.6309 -11.6101 -2.9727 20 17 4.9058 -10.2623 -4.0318 21 6 5.2820 -12.7348 -3.1590 22 17 5.0077 -14.0824 -2.0996 23 6 3.9655 -9.1243 -1.4025 24 1 -0.4850 0.8401 0.0004 25 1 3.1249 -3.7319 0.8876 26 1 3.1236 -3.7310 -0.8924 27 1 3.8006 -6.1836 -0.0025 28 1 1.7212 -7.8750 -0.8922 29 1 1.7217 -7.8754 0.8877 30 1 4.3096 -8.4057 0.6685 31 1 2.0741 -10.3677 -0.2331 32 1 3.2808 -10.5973 1.1040 33 1 2.6772 -11.1764 -2.2317 34 1 3.5413 -12.4541 -1.3434 35 1 5.9855 -12.8230 -3.9739 36 1 4.9044 -8.6627 -1.7081 37 1 3.1875 -9.0411 -2.1614 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268511027.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:08:58 Heat of formation + Delta-G solvation = -21.907667 kcal Electronic energy + Delta-G solvation = -21098.015675 eV Core-core repulsion = 17474.944810 eV Total energy + Delta-G solvation = -3623.070865 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 338.036 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.50752 -40.35290 -38.30570 -37.61595 -35.94881 -34.58043 -34.47290 -31.87602 -30.27508 -27.77163 -27.24721 -26.96197 -23.90558 -21.87405 -21.13739 -20.71643 -19.77231 -18.03616 -17.65927 -17.23223 -17.05712 -16.87214 -16.64005 -16.44401 -16.00274 -15.49972 -15.07472 -14.63738 -14.45760 -14.33429 -14.07933 -13.68480 -13.58958 -13.29679 -13.15725 -13.06075 -12.88287 -12.80356 -12.63739 -12.45815 -12.37864 -11.83486 -11.70489 -11.60144 -11.27336 -11.13690 -10.93233 -10.26693 -10.18823 -10.04885 -9.85247 -8.65708 -8.34043 -6.11903 0.44217 0.51819 1.28085 1.42937 1.47994 1.58424 1.63524 1.75964 2.26473 2.31206 2.95185 3.00069 3.25011 3.34861 3.51261 3.69428 3.99033 4.05712 4.22552 4.24741 4.31033 4.32361 4.49848 4.53266 4.58917 4.65158 4.71549 4.75025 4.82638 4.88220 5.16988 5.20509 5.42670 5.48337 5.90455 6.20571 6.53026 7.07334 7.26774 8.75108 Molecular weight = 338.04amu Principal moments of inertia in cm(-1) A = 0.027939 B = 0.001780 C = 0.001717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.955084 B =15725.477099 C =16299.620921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.012 3.988 3 Si 0.999 3.001 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.258 1.258 7 C -0.546 4.546 8 H 0.083 0.917 9 S -0.153 6.153 10 C -0.130 4.130 11 C 0.533 3.467 12 O -0.568 6.568 13 N -0.710 5.710 14 C 0.134 3.866 15 C -0.115 4.115 16 C 0.012 3.988 17 N -0.469 5.469 18 C 0.044 3.956 19 C -0.067 4.067 20 Cl -0.056 7.056 21 C -0.082 4.082 22 Cl -0.061 7.061 23 C 0.003 3.997 24 H 0.271 0.729 25 H 0.110 0.890 26 H 0.109 0.891 27 H 0.417 0.583 28 H 0.058 0.942 29 H 0.065 0.935 30 H 0.122 0.878 31 H 0.082 0.918 32 H 0.103 0.897 33 H 0.068 0.932 34 H 0.113 0.887 35 H 0.175 0.825 36 H 0.088 0.912 37 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.785 -28.909 -4.856 32.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.192 4.192 3 Si 0.820 3.180 4 H -0.193 1.193 5 H -0.203 1.203 6 H -0.182 1.182 7 C -0.694 4.694 8 H 0.101 0.899 9 S 0.074 5.926 10 C -0.281 4.281 11 C 0.319 3.681 12 O -0.446 6.446 13 N -0.364 5.364 14 C 0.009 3.991 15 C -0.134 4.134 16 C -0.117 4.117 17 N -0.191 5.191 18 C -0.084 4.084 19 C -0.095 4.095 20 Cl -0.027 7.027 21 C -0.129 4.129 22 Cl -0.033 7.033 23 C -0.126 4.126 24 H 0.080 0.920 25 H 0.128 0.872 26 H 0.127 0.873 27 H 0.254 0.746 28 H 0.076 0.924 29 H 0.083 0.917 30 H 0.140 0.860 31 H 0.100 0.900 32 H 0.121 0.879 33 H 0.086 0.914 34 H 0.131 0.869 35 H 0.192 0.808 36 H 0.107 0.893 37 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 13.312 -29.469 -4.663 32.670 hybrid contribution 1.018 1.550 -0.529 1.928 sum 14.330 -27.919 -5.192 31.808 Atomic orbital electron populations 1.70187 1.07957 1.28578 1.48040 1.26132 0.95978 1.03330 0.93784 0.84952 0.78216 0.76038 0.78772 1.19347 1.20324 1.18171 1.23209 0.95359 0.92014 1.58791 0.89889 1.85569 1.10679 0.99268 1.97050 1.23379 1.03492 0.94449 1.06807 1.20049 0.86226 0.86708 0.75130 1.90691 1.17466 1.86141 1.50310 1.45731 1.10304 1.05042 1.75363 1.21343 0.96188 0.79646 1.01874 1.22912 0.97903 0.93955 0.98647 1.23860 0.95262 0.93634 0.98943 1.69087 1.37936 1.02831 1.09267 1.22023 0.94744 1.00561 0.91099 1.23101 1.01160 0.89730 0.95526 1.98421 1.95428 1.44773 1.64108 1.24576 1.01770 0.88259 0.98263 1.98390 1.95258 1.44245 1.65367 1.24050 1.02025 0.90348 0.96158 0.92017 0.87176 0.87251 0.74623 0.92377 0.91652 0.85965 0.90026 0.87880 0.91402 0.86889 0.80780 0.89324 0.91043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.98 13.22 21.65 0.29 -55.69 16 2 C 0.01 0.71 5.49 84.86 0.47 1.17 16 3 Si 1.00 43.50 29.55 68.60 2.03 45.53 16 4 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 5 H -0.28 -11.81 7.11 99.48 0.71 -11.11 16 6 H -0.26 -10.52 7.11 99.48 0.71 -9.82 16 7 C -0.55 -31.10 9.50 67.95 0.65 -30.45 16 8 H 0.08 4.38 7.80 -2.91 -0.02 4.35 16 9 S -0.15 -8.46 20.57 -56.49 -1.16 -9.62 16 10 C -0.13 -5.06 6.16 71.24 0.44 -4.62 16 11 C 0.53 19.14 7.85 87.66 0.69 19.83 16 12 O -0.57 -25.92 15.86 -3.03 -0.05 -25.97 16 13 N -0.71 -16.69 5.56 -463.05 -2.57 -19.27 16 14 C 0.13 2.64 5.58 86.38 0.48 3.12 16 15 C -0.12 -1.50 4.09 -10.45 -0.04 -1.54 16 16 C 0.01 0.14 7.29 83.56 0.61 0.75 16 17 N -0.47 -6.25 6.40 -932.60 -5.97 -12.22 16 18 C 0.04 0.53 5.07 85.55 0.43 0.97 16 19 C -0.07 -0.83 6.03 25.36 0.15 -0.68 16 20 Cl -0.06 -0.78 26.85 -2.72 -0.07 -0.85 16 21 C -0.08 -0.85 10.54 67.49 0.71 -0.14 16 22 Cl -0.06 -0.67 26.97 -2.72 -0.07 -0.75 16 23 C 0.00 0.04 5.36 83.56 0.45 0.49 16 24 H 0.27 15.43 8.31 -92.70 -0.77 14.66 16 25 H 0.11 3.84 8.14 -2.39 -0.02 3.82 16 26 H 0.11 3.82 8.14 -2.40 -0.02 3.81 16 27 H 0.42 6.98 8.47 -92.71 -0.79 6.20 16 28 H 0.06 1.29 7.81 -2.39 -0.02 1.27 16 29 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.12 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.08 0.87 7.73 -2.39 -0.02 0.85 16 32 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.07 0.80 7.56 -2.39 -0.02 0.78 16 34 H 0.11 1.28 6.01 -2.39 -0.01 1.27 16 35 H 0.17 1.20 8.06 -2.91 -0.02 1.17 16 36 H 0.09 1.26 7.96 -2.39 -0.02 1.24 16 37 H 0.07 1.08 7.25 -2.38 -0.02 1.06 16 Total: -1.00 -74.87 356.94 -2.24 -77.11 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: 0.32 Total: 12.82 kcal Atomic # 6 Polarization: -16.13 SS G_CDS: 5.03 Total: -11.10 kcal Atomic # 7 Polarization: -78.92 SS G_CDS: -8.26 Total: -87.18 kcal Atomic # 8 Polarization: -25.92 SS G_CDS: -0.05 Total: -25.97 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.53 kcal Atomic # 16 Polarization: -8.46 SS G_CDS: -1.16 Total: -9.62 kcal Atomic # 17 Polarization: -1.45 SS G_CDS: -0.15 Total: -1.60 kcal Total: -74.87 -2.24 -77.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268511027.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.204 kcal (2) G-P(sol) polarization free energy of solvation -74.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds