Wall clock time and date at job start Tue Mar 31 2020 21:11:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86803 * 119.99643 * 2 1 4 4 H 1.48494 * 109.47228 * 0.02562 * 3 2 1 5 5 H 1.48501 * 109.46793 * 120.00353 * 3 2 1 6 6 H 1.48500 * 109.47000 * 240.00445 * 3 2 1 7 7 C 1.38798 * 119.99969 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99506 * 179.97438 * 7 2 1 9 9 S 1.76194 * 120.00052 * 359.97438 * 7 2 1 10 10 C 1.81004 * 99.99738 * 179.97438 * 9 7 2 11 11 C 1.50705 * 109.47234 * 179.97438 * 10 9 7 12 12 O 1.21284 * 119.99701 * 0.02562 * 11 10 9 13 13 N 1.34770 * 120.00005 * 180.02562 * 11 10 9 14 14 C 1.46500 * 119.99677 * 180.02562 * 13 11 10 15 15 C 1.53010 * 109.47030 * 179.97438 * 14 13 11 16 16 H 1.08995 * 112.95545 * 72.85740 * 15 14 13 17 17 C 1.53931 * 113.75695 * 204.50366 * 15 14 13 18 18 C 1.53934 * 86.34253 * 138.03680 * 17 15 14 19 19 N 1.47961 * 113.75500 * 301.06197 * 15 14 13 20 20 C 1.46899 * 110.99527 * 108.10120 * 19 15 14 21 21 C 1.50701 * 109.46792 * 169.99602 * 20 19 15 22 22 C 1.31339 * 120.00029 * 124.99703 * 21 20 19 23 23 Cl 1.73597 * 119.99865 * 0.02562 * 22 21 20 24 24 Cl 1.73599 * 119.99888 * 180.02562 * 22 21 20 25 25 H 0.97005 * 119.99723 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47255 * 299.99975 * 10 9 7 27 27 H 1.09001 * 109.46783 * 60.00283 * 10 9 7 28 28 H 0.96995 * 120.00238 * 359.97438 * 13 11 10 29 29 H 1.09000 * 109.46949 * 299.99541 * 14 13 11 30 30 H 1.08993 * 109.47519 * 59.99742 * 14 13 11 31 31 H 1.09007 * 113.73119 * 252.39440 * 17 15 14 32 32 H 1.08996 * 113.73604 * 23.56971 * 17 15 14 33 33 H 1.09004 * 113.76009 * 90.59248 * 18 17 15 34 34 H 1.08991 * 113.76023 * 221.85315 * 18 17 15 35 35 H 1.08998 * 109.47394 * 289.99069 * 20 19 15 36 36 H 1.09002 * 109.47466 * 50.00360 * 20 19 15 37 37 H 1.08002 * 120.00406 * 305.00114 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 1.2852 2.7465 0.0006 5 1 3.1040 1.6964 1.2125 6 1 3.1039 1.6966 -1.2126 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2019 -0.0010 9 16 1.1294 -2.7279 -0.0005 10 6 2.5160 -3.8913 -0.0021 11 6 1.9876 -5.3027 -0.0017 12 8 0.7913 -5.5023 -0.0009 13 7 2.8444 -6.3430 -0.0022 14 6 2.3307 -7.7150 -0.0024 15 6 3.5028 -8.6985 -0.0036 16 1 4.0193 -8.7455 0.9551 17 6 3.1534 -10.0789 -0.5882 18 6 4.5191 -10.0154 -1.2957 19 7 4.4077 -8.5458 -1.1643 20 6 5.6898 -7.9550 -0.7580 21 6 6.6670 -8.0400 -1.9020 22 6 7.2609 -6.9538 -2.3406 23 17 6.9205 -5.4201 -1.6020 24 17 8.3861 -7.0517 -3.6589 25 1 -0.4850 -0.8401 0.0004 26 1 3.1239 -3.7308 -0.8925 27 1 3.1252 -3.7316 0.8875 28 1 3.8011 -6.1834 -0.0032 29 1 1.7224 -7.8752 0.8878 30 1 1.7218 -7.8749 -0.8921 31 1 3.0837 -10.8677 0.1609 32 1 2.3032 -10.0642 -1.2700 33 1 5.3346 -10.4477 -0.7158 34 1 4.4965 -10.3688 -2.3265 35 1 5.5386 -6.9103 -0.4863 36 1 6.0856 -8.4998 0.0992 37 1 6.8791 -8.9942 -2.3614 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001276792518.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:11:58 Heat of formation + Delta-G solvation = -3.857350 kcal Electronic energy + Delta-G solvation = -21806.625510 eV Core-core repulsion = 18184.337365 eV Total energy + Delta-G solvation = -3622.288145 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 338.036 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.75334 -38.94323 -37.80033 -36.91405 -34.69166 -34.11123 -32.50203 -30.37375 -29.65006 -27.71452 -24.82824 -24.73075 -23.54102 -20.74933 -20.45282 -19.96774 -18.32997 -17.59470 -16.73957 -16.32696 -16.24056 -15.83737 -15.18985 -14.98856 -14.42325 -14.13638 -13.98400 -13.81833 -13.39061 -13.32018 -13.09438 -12.54163 -12.37803 -12.22029 -12.05048 -11.84772 -11.81056 -11.75879 -11.65213 -11.39416 -11.18031 -10.99047 -10.90059 -10.15698 -9.65042 -9.55789 -9.45334 -9.17590 -9.00117 -8.88667 -8.19680 -6.64053 -6.59893 -3.97242 0.94187 1.06666 2.00733 2.91040 3.05192 3.31184 3.38763 3.39623 3.58663 3.67851 4.02800 4.24067 4.27319 4.40699 4.57818 4.71189 4.77395 4.81137 4.84121 5.10510 5.19182 5.24717 5.28427 5.29975 5.42183 5.47507 5.57783 5.67399 5.78582 5.82295 5.85761 6.04466 6.49812 6.58986 7.65328 7.94207 8.52546 8.55956 9.29554 10.84147 Molecular weight = 338.04amu Principal moments of inertia in cm(-1) A = 0.010439 B = 0.003165 C = 0.002485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2681.509044 B = 8844.751909 C =11263.924991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.036 3.964 3 Si 1.083 2.917 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.607 4.607 8 H 0.065 0.935 9 S -0.114 6.114 10 C -0.131 4.131 11 C 0.531 3.469 12 O -0.519 6.519 13 N -0.731 5.731 14 C 0.142 3.858 15 C 0.017 3.983 16 H 0.088 0.912 17 C -0.133 4.133 18 C -0.002 4.002 19 N -0.463 5.463 20 C 0.039 3.961 21 C -0.108 4.108 22 C -0.036 4.036 23 Cl -0.027 7.027 24 Cl -0.039 7.039 25 H 0.278 0.722 26 H 0.091 0.909 27 H 0.090 0.910 28 H 0.394 0.606 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.098 0.902 33 H 0.072 0.928 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.066 0.934 37 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.519 -23.525 -2.236 29.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.175 4.175 3 Si 0.909 3.091 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.211 1.211 7 C -0.755 4.755 8 H 0.083 0.917 9 S 0.112 5.888 10 C -0.282 4.282 11 C 0.317 3.683 12 O -0.393 6.393 13 N -0.386 5.386 14 C 0.017 3.983 15 C -0.092 4.092 16 H 0.106 0.894 17 C -0.172 4.172 18 C -0.131 4.131 19 N -0.186 5.186 20 C -0.090 4.090 21 C -0.129 4.129 22 C -0.090 4.090 23 Cl 0.001 6.999 24 Cl -0.011 7.011 25 H 0.090 0.910 26 H 0.109 0.891 27 H 0.108 0.892 28 H 0.228 0.772 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.096 0.904 32 H 0.116 0.884 33 H 0.090 0.910 34 H 0.111 0.889 35 H 0.112 0.888 36 H 0.084 0.916 37 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 15.173 -21.685 -2.840 26.618 hybrid contribution 2.888 -1.582 0.556 3.340 sum 18.061 -23.268 -2.284 29.543 Atomic orbital electron populations 1.70801 1.06693 1.30971 1.43390 1.26038 0.96322 1.02084 0.93029 0.83347 0.74783 0.74258 0.76717 1.20257 1.21159 1.21118 1.23703 0.96005 0.92255 1.63576 0.91695 1.84792 1.08069 0.98705 1.97206 1.23311 1.05102 0.94721 1.05058 1.20245 0.86551 0.86249 0.75275 1.90699 1.15278 1.85585 1.47751 1.45864 1.09707 1.05416 1.77589 1.21199 0.94365 0.80002 1.02698 1.23828 0.95222 0.96035 0.94124 0.89417 1.23341 0.98357 0.95459 1.00018 1.23923 0.97397 0.89436 1.02335 1.68746 1.08124 1.11171 1.30567 1.21980 0.89807 1.02919 0.94245 1.22929 0.95407 0.96784 0.97747 1.24120 1.00032 0.89581 0.95307 1.98455 1.93084 1.28758 1.79636 1.98430 1.59912 1.97540 1.45222 0.90978 0.89066 0.89212 0.77197 0.90978 0.90787 0.90354 0.88371 0.90962 0.88876 0.88777 0.91619 0.83791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -27.85 13.67 55.49 0.76 -27.10 16 2 C 0.04 1.05 5.49 -17.43 -0.10 0.96 16 3 Si 1.08 25.31 29.92 -169.99 -5.09 20.22 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 6 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.61 -17.81 9.50 30.94 0.29 -17.52 16 8 H 0.06 1.83 7.80 -52.49 -0.41 1.42 16 9 S -0.11 -3.13 19.60 -107.50 -2.11 -5.24 16 10 C -0.13 -2.74 6.16 36.01 0.22 -2.52 16 11 C 0.53 10.16 7.85 -10.99 -0.09 10.08 16 12 O -0.52 -11.89 15.86 5.55 0.09 -11.81 16 13 N -0.73 -10.11 5.50 -60.29 -0.33 -10.44 16 14 C 0.14 1.61 5.80 -4.04 -0.02 1.58 16 15 C 0.02 0.13 3.40 -66.65 -0.23 -0.10 16 16 H 0.09 0.56 7.80 -51.93 -0.40 0.15 16 17 C -0.13 -0.77 7.84 -25.80 -0.20 -0.97 16 18 C 0.00 -0.01 7.37 -2.76 -0.02 -0.03 16 19 N -0.46 -3.64 5.94 -232.14 -1.38 -5.02 16 20 C 0.04 0.28 4.93 -4.98 -0.02 0.25 16 21 C -0.11 -0.78 9.09 -36.11 -0.33 -1.10 16 22 C -0.04 -0.32 6.97 28.93 0.20 -0.11 16 23 Cl -0.03 -0.28 26.92 -51.86 -1.40 -1.68 16 24 Cl -0.04 -0.34 29.06 -51.86 -1.51 -1.84 16 25 H 0.28 8.93 7.12 -40.82 -0.29 8.64 16 26 H 0.09 1.82 8.14 -51.92 -0.42 1.39 16 27 H 0.09 1.74 8.14 -51.92 -0.42 1.32 16 28 H 0.39 4.64 6.59 -40.82 -0.27 4.38 16 29 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.07 0.94 7.91 -51.93 -0.41 0.53 16 31 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.10 0.63 7.94 -51.93 -0.41 0.21 16 33 H 0.07 0.29 7.78 -51.93 -0.40 -0.12 16 34 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.09 0.79 4.42 -51.93 -0.23 0.56 16 36 H 0.07 0.36 7.69 -51.93 -0.40 -0.03 16 37 H 0.14 0.79 7.91 -52.49 -0.42 0.38 16 LS Contribution 355.86 15.07 5.36 5.36 Total: -1.00 -35.21 355.86 -10.44 -45.65 By element: Atomic # 1 Polarization: 5.92 SS G_CDS: -4.55 Total: 1.37 kcal Atomic # 6 Polarization: -9.19 SS G_CDS: -0.29 Total: -9.48 kcal Atomic # 7 Polarization: -41.61 SS G_CDS: -0.95 Total: -42.56 kcal Atomic # 8 Polarization: -11.89 SS G_CDS: 0.09 Total: -11.81 kcal Atomic # 14 Polarization: 25.31 SS G_CDS: -5.09 Total: 20.22 kcal Atomic # 16 Polarization: -3.13 SS G_CDS: -2.11 Total: -5.24 kcal Atomic # 17 Polarization: -0.62 SS G_CDS: -2.90 Total: -3.52 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -35.21 -10.44 -45.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276792518.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.790 kcal (2) G-P(sol) polarization free energy of solvation -35.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds