Wall clock time and date at job start Tue Mar 31 2020 21:12:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86803 * 120.00239 * 2 1 4 4 H 1.48496 * 109.47187 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47141 * 300.00194 * 3 2 1 6 6 H 1.48498 * 109.47018 * 60.00241 * 3 2 1 7 7 C 1.38803 * 119.99756 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99679 * 179.97438 * 7 2 1 9 9 S 1.76199 * 119.99855 * 0.27728 * 7 2 1 10 10 C 1.80999 * 99.99825 * 179.72221 * 9 7 2 11 11 C 1.50697 * 109.47181 * 179.97438 * 10 9 7 12 12 O 1.21278 * 120.00042 * 0.02562 * 11 10 9 13 13 N 1.34778 * 120.00209 * 180.02562 * 11 10 9 14 14 C 1.46499 * 120.00278 * 180.02562 * 13 11 10 15 15 C 1.52995 * 109.47595 * 179.97438 * 14 13 11 16 16 H 1.08993 * 112.95903 * 287.14471 * 15 14 13 17 17 C 1.53934 * 113.76279 * 155.48896 * 15 14 13 18 18 C 1.53930 * 86.34515 * 221.96600 * 17 15 14 19 19 N 1.47960 * 86.17948 * 23.72221 * 18 17 15 20 20 C 1.46907 * 110.99970 * 222.41657 * 19 18 17 21 21 C 1.50697 * 109.47003 * 269.35874 * 20 19 18 22 22 C 1.31333 * 119.99805 * 125.00249 * 21 20 19 23 23 Cl 1.73598 * 120.00158 * 359.97438 * 22 21 20 24 24 Cl 1.73602 * 119.99898 * 179.97438 * 22 21 20 25 25 H 0.97000 * 119.99219 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.47409 * 300.00151 * 10 9 7 27 27 H 1.09002 * 109.47152 * 60.00041 * 10 9 7 28 28 H 0.97000 * 119.99750 * 359.97438 * 13 11 10 29 29 H 1.09008 * 109.46975 * 299.99840 * 14 13 11 30 30 H 1.09007 * 109.47007 * 59.99239 * 14 13 11 31 31 H 1.08994 * 113.73523 * 336.32990 * 17 15 14 32 32 H 1.09008 * 113.72897 * 107.50024 * 17 15 14 33 33 H 1.08998 * 113.76061 * 138.03577 * 18 17 15 34 34 H 1.09004 * 113.75962 * 269.29659 * 18 17 15 35 35 H 1.08999 * 109.47028 * 29.35638 * 20 19 18 36 36 H 1.09000 * 109.46740 * 149.36205 * 20 19 18 37 37 H 1.08001 * 120.00410 * 304.99731 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.7104 1.3463 0.0006 5 1 1.8917 2.3964 -1.2124 6 1 1.8917 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 16 1.1292 -2.7280 -0.0086 10 6 2.5157 -3.8914 -0.0148 11 6 1.9872 -5.3027 -0.0216 12 8 0.7910 -5.5022 -0.0227 13 7 2.8440 -6.3431 -0.0265 14 6 2.3302 -7.7150 -0.0337 15 6 3.5021 -8.6986 -0.0388 16 1 4.0180 -8.7402 -0.9980 17 6 3.1532 -10.0823 0.5385 18 6 4.5193 -10.0228 1.2453 19 7 4.4079 -8.5525 1.1221 20 6 5.6899 -7.9594 0.7183 21 6 6.4861 -7.6001 1.9462 22 6 7.7048 -8.0654 2.0979 23 17 8.3983 -9.0948 0.8842 24 17 8.6223 -7.6509 3.5122 25 1 -0.4849 0.8401 0.0004 26 1 3.1244 -3.7267 -0.9039 27 1 3.1244 -3.7361 0.8761 28 1 3.8007 -6.1835 -0.0260 29 1 1.7212 -7.8796 0.8553 30 1 1.7219 -7.8705 -0.9248 31 1 2.3045 -10.0710 1.2223 32 1 3.0811 -10.8665 -0.2152 33 1 4.4970 -10.3801 2.2748 34 1 5.3341 -10.4535 0.6632 35 1 6.2499 -8.6777 0.1194 36 1 5.5050 -7.0610 0.1294 37 1 6.0546 -6.9600 2.7015 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001276792519.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:12:02 Heat of formation + Delta-G solvation = 1.233643 kcal Electronic energy + Delta-G solvation = -21538.941465 eV Core-core repulsion = 17916.874082 eV Total energy + Delta-G solvation = -3622.067383 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 338.036 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.69361 -38.86058 -37.83829 -36.96220 -34.64409 -34.09759 -32.41739 -30.29748 -29.60761 -27.63172 -25.46970 -24.71891 -23.42398 -20.81572 -20.40495 -19.91426 -17.87996 -17.45899 -16.65416 -16.30301 -16.12704 -15.59375 -15.14508 -14.89447 -14.79591 -14.45311 -13.99802 -13.89162 -13.45844 -13.10425 -12.81358 -12.61745 -12.50055 -12.05858 -11.93548 -11.90272 -11.72356 -11.70451 -11.39491 -11.26137 -11.10371 -11.06126 -11.00718 -10.74063 -9.79547 -9.48890 -9.39223 -9.23639 -9.06727 -8.83219 -8.21553 -6.48434 -6.20850 -3.90977 0.90446 1.05562 1.97911 3.00525 3.14044 3.22261 3.26828 3.31501 3.43141 3.75712 4.07452 4.21359 4.35877 4.42176 4.63604 4.73106 4.82464 4.87524 4.97666 5.14428 5.19027 5.28601 5.30964 5.38309 5.47039 5.53134 5.63041 5.73726 5.88097 5.88862 5.93684 6.15283 6.54195 6.65248 7.60881 7.72806 8.36441 8.64800 9.24699 10.86642 Molecular weight = 338.04amu Principal moments of inertia in cm(-1) A = 0.011514 B = 0.002555 C = 0.002165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2431.305875 B =10957.160986 C =12928.946793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.918 3.082 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.534 4.534 8 H 0.073 0.927 9 S -0.060 6.060 10 C -0.153 4.153 11 C 0.532 3.468 12 O -0.518 6.518 13 N -0.733 5.733 14 C 0.142 3.858 15 C 0.019 3.981 16 H 0.087 0.913 17 C -0.135 4.135 18 C 0.002 3.998 19 N -0.465 5.465 20 C 0.036 3.964 21 C -0.090 4.090 22 C -0.050 4.050 23 Cl -0.044 7.044 24 Cl -0.038 7.038 25 H 0.268 0.732 26 H 0.088 0.912 27 H 0.089 0.911 28 H 0.393 0.607 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.098 0.902 32 H 0.077 0.923 33 H 0.092 0.908 34 H 0.072 0.928 35 H 0.068 0.932 36 H 0.095 0.905 37 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.876 -23.204 2.091 28.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.683 4.683 8 H 0.091 0.909 9 S 0.167 5.833 10 C -0.304 4.304 11 C 0.318 3.682 12 O -0.392 6.392 13 N -0.388 5.388 14 C 0.018 3.982 15 C -0.091 4.091 16 H 0.105 0.895 17 C -0.173 4.173 18 C -0.127 4.127 19 N -0.188 5.188 20 C -0.092 4.092 21 C -0.110 4.110 22 C -0.104 4.104 23 Cl -0.017 7.017 24 Cl -0.010 7.010 25 H 0.077 0.923 26 H 0.106 0.894 27 H 0.107 0.893 28 H 0.227 0.773 29 H 0.092 0.908 30 H 0.089 0.911 31 H 0.116 0.884 32 H 0.096 0.904 33 H 0.110 0.890 34 H 0.090 0.910 35 H 0.086 0.914 36 H 0.113 0.887 37 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 14.656 -23.082 2.663 27.471 hybrid contribution 3.107 0.990 -0.610 3.317 sum 17.763 -22.092 2.053 28.422 Atomic orbital electron populations 1.70033 1.05944 1.27316 1.46997 1.24996 0.95026 0.99025 0.94570 0.86120 0.79593 0.81911 0.77895 1.19621 1.20580 1.20566 1.22911 0.94932 0.91674 1.58761 0.90908 1.85397 1.04948 0.96298 1.96691 1.23525 1.06542 0.95522 1.04797 1.20282 0.86520 0.86249 0.75178 1.90701 1.15337 1.85584 1.47616 1.45893 1.09692 1.05392 1.77818 1.21186 0.94296 0.80092 1.02665 1.23797 0.95102 0.96033 0.94143 0.89480 1.23346 0.98344 0.95517 1.00072 1.23968 0.97295 0.89097 1.02322 1.68524 1.08183 1.11164 1.30921 1.22008 0.91755 1.01520 0.93923 1.23150 0.91085 0.97091 0.99704 1.24080 0.94161 1.02395 0.89767 1.98402 1.84853 1.66160 1.52243 1.98436 1.74769 1.91611 1.36145 0.92253 0.89396 0.89284 0.77258 0.90820 0.91064 0.88378 0.90391 0.88993 0.90986 0.91376 0.88724 0.82909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.21 13.22 55.49 0.73 -25.47 16 2 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 3 Si 0.92 21.43 29.55 -169.99 -5.02 16.41 16 4 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 5 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 6 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.53 -15.25 9.50 30.94 0.29 -14.95 16 8 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 9 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 10 C -0.15 -3.09 6.16 36.00 0.22 -2.87 16 11 C 0.53 9.88 7.85 -10.99 -0.09 9.80 16 12 O -0.52 -11.75 15.86 5.56 0.09 -11.66 16 13 N -0.73 -9.63 5.50 -60.29 -0.33 -9.96 16 14 C 0.14 1.57 5.80 -4.04 -0.02 1.54 16 15 C 0.02 0.14 3.38 -66.65 -0.23 -0.09 16 16 H 0.09 0.56 7.93 -51.93 -0.41 0.15 16 17 C -0.13 -0.81 7.84 -25.80 -0.20 -1.02 16 18 C 0.00 0.01 7.95 -2.77 -0.02 -0.01 16 19 N -0.47 -3.59 5.83 -232.16 -1.35 -4.95 16 20 C 0.04 0.25 4.94 -4.97 -0.02 0.23 16 21 C -0.09 -0.67 9.56 -36.11 -0.35 -1.02 16 22 C -0.05 -0.39 6.97 28.93 0.20 -0.19 16 23 Cl -0.04 -0.33 26.92 -51.86 -1.40 -1.72 16 24 Cl -0.04 -0.31 29.06 -51.86 -1.51 -1.82 16 25 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 26 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 27 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 28 H 0.39 4.20 6.54 -40.82 -0.27 3.93 16 29 H 0.07 0.91 7.91 -51.92 -0.41 0.50 16 30 H 0.07 0.81 8.14 -51.92 -0.42 0.39 16 31 H 0.10 0.64 7.94 -51.93 -0.41 0.23 16 32 H 0.08 0.37 8.14 -51.92 -0.42 -0.06 16 33 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.07 0.39 7.48 -51.93 -0.39 0.00 16 35 H 0.07 0.43 5.25 -51.93 -0.27 0.16 16 36 H 0.09 0.64 6.40 -51.93 -0.33 0.31 16 37 H 0.15 1.17 8.06 -52.49 -0.42 0.75 16 LS Contribution 357.61 15.07 5.39 5.39 Total: -1.00 -33.81 357.61 -10.50 -44.31 By element: Atomic # 1 Polarization: 4.47 SS G_CDS: -4.58 Total: -0.11 kcal Atomic # 6 Polarization: -6.27 SS G_CDS: -0.31 Total: -6.58 kcal Atomic # 7 Polarization: -39.43 SS G_CDS: -0.95 Total: -40.38 kcal Atomic # 8 Polarization: -11.75 SS G_CDS: 0.09 Total: -11.66 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Atomic # 17 Polarization: -0.64 SS G_CDS: -2.90 Total: -3.54 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -33.81 -10.50 -44.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276792519.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.540 kcal (2) G-P(sol) polarization free energy of solvation -33.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.306 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds