Wall clock time and date at job start Tue Mar 31 2020 21:12:01
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31634 * 1
3 3 Si 1.86803 * 120.00239 * 2 1
4 4 H 1.48496 * 109.47187 * 179.97438 * 3 2 1
5 5 H 1.48494 * 109.47141 * 300.00194 * 3 2 1
6 6 H 1.48498 * 109.47018 * 60.00241 * 3 2 1
7 7 C 1.38803 * 119.99756 * 180.02562 * 2 1 3
8 8 H 1.08002 * 119.99679 * 179.97438 * 7 2 1
9 9 S 1.76199 * 119.99855 * 0.27728 * 7 2 1
10 10 C 1.80999 * 99.99825 * 179.72221 * 9 7 2
11 11 C 1.50697 * 109.47181 * 179.97438 * 10 9 7
12 12 O 1.21278 * 120.00042 * 0.02562 * 11 10 9
13 13 N 1.34778 * 120.00209 * 180.02562 * 11 10 9
14 14 C 1.46499 * 120.00278 * 180.02562 * 13 11 10
15 15 C 1.52995 * 109.47595 * 179.97438 * 14 13 11
16 16 H 1.08993 * 112.95903 * 287.14471 * 15 14 13
17 17 C 1.53934 * 113.76279 * 155.48896 * 15 14 13
18 18 C 1.53930 * 86.34515 * 221.96600 * 17 15 14
19 19 N 1.47960 * 86.17948 * 23.72221 * 18 17 15
20 20 C 1.46907 * 110.99970 * 222.41657 * 19 18 17
21 21 C 1.50697 * 109.47003 * 269.35874 * 20 19 18
22 22 C 1.31333 * 119.99805 * 125.00249 * 21 20 19
23 23 Cl 1.73598 * 120.00158 * 359.97438 * 22 21 20
24 24 Cl 1.73602 * 119.99898 * 179.97438 * 22 21 20
25 25 H 0.97000 * 119.99219 * 359.97438 * 1 2 3
26 26 H 1.08999 * 109.47409 * 300.00151 * 10 9 7
27 27 H 1.09002 * 109.47152 * 60.00041 * 10 9 7
28 28 H 0.97000 * 119.99750 * 359.97438 * 13 11 10
29 29 H 1.09008 * 109.46975 * 299.99840 * 14 13 11
30 30 H 1.09007 * 109.47007 * 59.99239 * 14 13 11
31 31 H 1.08994 * 113.73523 * 336.32990 * 17 15 14
32 32 H 1.09008 * 113.72897 * 107.50024 * 17 15 14
33 33 H 1.08998 * 113.76061 * 138.03577 * 18 17 15
34 34 H 1.09004 * 113.75962 * 269.29659 * 18 17 15
35 35 H 1.08999 * 109.47028 * 29.35638 * 20 19 18
36 36 H 1.09000 * 109.46740 * 149.36205 * 20 19 18
37 37 H 1.08001 * 120.00410 * 304.99731 * 21 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3163 0.0000 0.0000
3 14 2.2504 1.6177 0.0000
4 1 3.7104 1.3463 0.0006
5 1 1.8917 2.3964 -1.2124
6 1 1.8917 2.3964 1.2125
7 6 2.0103 -1.2021 -0.0005
8 1 3.0903 -1.2021 -0.0010
9 16 1.1292 -2.7280 -0.0086
10 6 2.5157 -3.8914 -0.0148
11 6 1.9872 -5.3027 -0.0216
12 8 0.7910 -5.5022 -0.0227
13 7 2.8440 -6.3431 -0.0265
14 6 2.3302 -7.7150 -0.0337
15 6 3.5021 -8.6986 -0.0388
16 1 4.0180 -8.7402 -0.9980
17 6 3.1532 -10.0823 0.5385
18 6 4.5193 -10.0228 1.2453
19 7 4.4079 -8.5525 1.1221
20 6 5.6899 -7.9594 0.7183
21 6 6.4861 -7.6001 1.9462
22 6 7.7048 -8.0654 2.0979
23 17 8.3983 -9.0948 0.8842
24 17 8.6223 -7.6509 3.5122
25 1 -0.4849 0.8401 0.0004
26 1 3.1244 -3.7267 -0.9039
27 1 3.1244 -3.7361 0.8761
28 1 3.8007 -6.1835 -0.0260
29 1 1.7212 -7.8796 0.8553
30 1 1.7219 -7.8705 -0.9248
31 1 2.3045 -10.0710 1.2223
32 1 3.0811 -10.8665 -0.2152
33 1 4.4970 -10.3801 2.2748
34 1 5.3341 -10.4535 0.6632
35 1 6.2499 -8.6777 0.1194
36 1 5.5050 -7.0610 0.1294
37 1 6.0546 -6.9600 2.7015
RHF calculation, no. of doubly occupied orbitals= 54
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001276792519.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 21:12:01
Heat of formation + Delta-G solvation = -22.794388 kcal
Electronic energy + Delta-G solvation = -21539.983399 eV
Core-core repulsion = 17916.874082 eV
Total energy + Delta-G solvation = -3623.109316 eV
No. of doubly occupied orbitals = 54
Molecular weight
(most abundant/longest-lived isotopes) = 338.036 amu
Computer time = 0.58 seconds
Orbital eigenvalues (eV)
-41.37345 -40.22123 -38.43293 -37.55846 -35.66297 -34.91727 -34.57390 -31.57256
-30.33071 -28.68642 -27.61537 -25.26225 -24.20393 -21.81691 -21.31920 -20.59951
-19.79382 -18.06759 -17.86792 -17.38820 -17.04420 -16.87359 -16.43618 -16.31172
-15.85340 -15.55844 -15.11783 -14.75766 -14.60606 -14.42488 -14.23286 -13.57973
-13.36536 -13.15031 -12.99769 -12.89257 -12.62797 -12.61093 -12.49954 -12.46251
-12.29854 -12.00668 -11.81870 -11.76377 -11.66390 -11.15087 -10.91994 -10.26029
-10.07679 -10.03624 -9.81292 -8.65349 -8.34041 -6.11675 0.31681 0.47088
1.28201 1.38895 1.41935 1.48098 1.59130 1.64966 2.25012 2.29588
2.87298 3.00223 3.33336 3.53606 3.76026 3.83553 3.98333 4.10752
4.13137 4.28271 4.29934 4.34324 4.44373 4.51415 4.66025 4.74664
4.82301 4.89999 4.91165 5.01912 5.25026 5.29051 5.43026 5.50172
6.00208 6.20938 6.50907 7.07526 7.26811 8.75445
Molecular weight = 338.04amu
Principal moments of inertia in cm(-1)
A = 0.011514 B = 0.002555 C = 0.002165
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2431.305875 B =10957.160986 C =12928.946793
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.911 5.911
2 C 0.013 3.987
3 Si 0.999 3.001
4 H -0.257 1.257
5 H -0.274 1.274
6 H -0.274 1.274
7 C -0.545 4.545
8 H 0.082 0.918
9 S -0.150 6.150
10 C -0.130 4.130
11 C 0.533 3.467
12 O -0.566 6.566
13 N -0.707 5.707
14 C 0.140 3.860
15 C 0.025 3.975
16 H 0.107 0.893
17 C -0.128 4.128
18 C 0.006 3.994
19 N -0.483 5.483
20 C 0.037 3.963
21 C -0.088 4.088
22 C -0.054 4.054
23 Cl -0.040 7.040
24 Cl -0.045 7.045
25 H 0.271 0.729
26 H 0.109 0.891
27 H 0.107 0.893
28 H 0.409 0.591
29 H 0.058 0.942
30 H 0.069 0.931
31 H 0.090 0.910
32 H 0.097 0.903
33 H 0.090 0.910
34 H 0.085 0.915
35 H 0.077 0.923
36 H 0.099 0.901
37 H 0.150 0.850
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 19.324 -23.915 1.662 30.791
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.548 5.548
2 C -0.192 4.192
3 Si 0.820 3.180
4 H -0.180 1.180
5 H -0.199 1.199
6 H -0.200 1.200
7 C -0.693 4.693
8 H 0.100 0.900
9 S 0.077 5.923
10 C -0.281 4.281
11 C 0.318 3.682
12 O -0.445 6.445
13 N -0.360 5.360
14 C 0.016 3.984
15 C -0.084 4.084
16 H 0.124 0.876
17 C -0.166 4.166
18 C -0.122 4.122
19 N -0.206 5.206
20 C -0.091 4.091
21 C -0.108 4.108
22 C -0.108 4.108
23 Cl -0.012 7.012
24 Cl -0.017 7.017
25 H 0.080 0.920
26 H 0.127 0.873
27 H 0.125 0.875
28 H 0.246 0.754
29 H 0.077 0.923
30 H 0.087 0.913
31 H 0.109 0.891
32 H 0.115 0.885
33 H 0.108 0.892
34 H 0.103 0.897
35 H 0.095 0.905
36 H 0.117 0.883
37 H 0.167 0.833
Dipole moment (debyes) X Y Z Total
from point charges 17.160 -23.838 2.236 29.457
hybrid contribution 2.391 1.067 -0.463 2.659
sum 19.551 -22.771 1.773 30.065
Atomic orbital electron populations
1.70193 1.07963 1.28520 1.48113 1.26127 0.95965 1.03303 0.93779
0.84908 0.78623 0.76367 0.78068 1.18025 1.19910 1.19978 1.23236
0.95330 0.92022 1.58695 0.89954 1.85573 1.10538 0.99186 1.97023
1.23370 1.03545 0.94590 1.06600 1.20034 0.86250 0.86652 0.75215
1.90689 1.17359 1.86084 1.50319 1.45659 1.09881 1.05223 1.75268
1.21347 0.95918 0.79232 1.01868 1.23761 0.93989 0.95537 0.95114
0.87568 1.23321 0.98062 0.94989 1.00228 1.23983 0.97674 0.88013
1.02542 1.68492 1.08620 1.12426 1.31090 1.22041 0.91489 1.01901
0.93698 1.23182 0.91007 0.96815 0.99844 1.24098 0.94228 1.02722
0.89739 1.98402 1.84815 1.66008 1.51942 1.98435 1.74961 1.91700
1.36633 0.92008 0.87293 0.87504 0.75428 0.92336 0.91270 0.89138
0.88472 0.89156 0.89733 0.90483 0.88338 0.83265
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.91 -56.09 13.22 21.65 0.29 -55.80 16
2 C 0.01 0.74 5.49 84.86 0.47 1.20 16
3 Si 1.00 43.63 29.55 68.60 2.03 45.66 16
4 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16
5 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16
6 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16
7 C -0.54 -31.14 9.50 67.96 0.65 -30.50 16
8 H 0.08 4.37 7.80 -2.91 -0.02 4.35 16
9 S -0.15 -8.37 20.57 -56.49 -1.16 -9.53 16
10 C -0.13 -5.13 6.16 71.23 0.44 -4.69 16
11 C 0.53 19.54 7.85 87.66 0.69 20.23 16
12 O -0.57 -26.18 15.86 -3.02 -0.05 -26.23 16
13 N -0.71 -17.40 5.50 -463.06 -2.55 -19.95 16
14 C 0.14 2.90 5.80 86.38 0.50 3.40 16
15 C 0.03 0.32 3.38 45.02 0.15 0.47 16
16 H 0.11 0.98 7.93 -2.39 -0.02 0.96 16
17 C -0.13 -1.23 7.84 31.24 0.24 -0.99 16
18 C 0.01 0.06 7.95 86.40 0.69 0.75 16
19 N -0.48 -6.33 5.83 -888.41 -5.18 -11.51 16
20 C 0.04 0.42 4.94 85.55 0.42 0.84 16
21 C -0.09 -1.16 9.56 25.32 0.24 -0.91 16
22 C -0.05 -0.75 6.97 67.45 0.47 -0.28 16
23 Cl -0.04 -0.50 26.92 -2.72 -0.07 -0.57 16
24 Cl -0.05 -0.70 29.06 -2.72 -0.08 -0.77 16
25 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16
26 H 0.11 3.84 8.14 -2.40 -0.02 3.83 16
27 H 0.11 3.84 8.14 -2.39 -0.02 3.82 16
28 H 0.41 7.66 6.54 -92.71 -0.61 7.05 16
29 H 0.06 1.43 7.91 -2.38 -0.02 1.41 16
30 H 0.07 1.50 8.14 -2.38 -0.02 1.49 16
31 H 0.09 1.04 7.94 -2.39 -0.02 1.02 16
32 H 0.10 0.60 8.14 -2.38 -0.02 0.58 16
33 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16
34 H 0.08 0.64 7.48 -2.39 -0.02 0.62 16
35 H 0.08 0.75 5.25 -2.39 -0.01 0.74 16
36 H 0.10 1.04 6.40 -2.39 -0.02 1.02 16
37 H 0.15 2.08 8.06 -2.91 -0.02 2.05 16
Total: -1.00 -74.94 357.61 -1.32 -76.25
By element:
Atomic # 1 Polarization: 12.43 SS G_CDS: 0.50 Total: 12.93 kcal
Atomic # 6 Polarization: -15.43 SS G_CDS: 4.96 Total: -10.47 kcal
Atomic # 7 Polarization: -79.82 SS G_CDS: -7.44 Total: -87.26 kcal
Atomic # 8 Polarization: -26.18 SS G_CDS: -0.05 Total: -26.23 kcal
Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal
Atomic # 16 Polarization: -8.37 SS G_CDS: -1.16 Total: -9.53 kcal
Atomic # 17 Polarization: -1.20 SS G_CDS: -0.15 Total: -1.35 kcal
Total: -74.94 -1.32 -76.25 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001276792519.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 53.459 kcal
(2) G-P(sol) polarization free energy of solvation -74.936 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.478 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.317 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.253 kcal
(6) G-S(sol) free energy of system = (1) + (5) -22.794 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.58 seconds