Wall clock time and date at job start Tue Mar 31 2020 21:12:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86803 * 120.00239 * 2 1 4 4 H 1.48496 * 109.47187 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47141 * 300.00194 * 3 2 1 6 6 H 1.48498 * 109.47018 * 60.00241 * 3 2 1 7 7 C 1.38803 * 119.99756 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99679 * 179.97438 * 7 2 1 9 9 S 1.76199 * 119.99855 * 0.27728 * 7 2 1 10 10 C 1.80999 * 99.99825 * 179.72221 * 9 7 2 11 11 C 1.50697 * 109.47181 * 179.97438 * 10 9 7 12 12 O 1.21278 * 120.00042 * 0.02562 * 11 10 9 13 13 N 1.34778 * 120.00209 * 180.02562 * 11 10 9 14 14 C 1.46499 * 120.00278 * 180.02562 * 13 11 10 15 15 C 1.52995 * 109.47595 * 179.97438 * 14 13 11 16 16 H 1.08993 * 112.95903 * 287.14471 * 15 14 13 17 17 C 1.53934 * 113.76279 * 155.48896 * 15 14 13 18 18 C 1.53930 * 86.34515 * 221.96600 * 17 15 14 19 19 N 1.47960 * 86.17948 * 23.72221 * 18 17 15 20 20 C 1.46907 * 110.99970 * 222.41657 * 19 18 17 21 21 C 1.50697 * 109.47003 * 269.35874 * 20 19 18 22 22 C 1.31333 * 119.99805 * 125.00249 * 21 20 19 23 23 Cl 1.73598 * 120.00158 * 359.97438 * 22 21 20 24 24 Cl 1.73602 * 119.99898 * 179.97438 * 22 21 20 25 25 H 0.97000 * 119.99219 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.47409 * 300.00151 * 10 9 7 27 27 H 1.09002 * 109.47152 * 60.00041 * 10 9 7 28 28 H 0.97000 * 119.99750 * 359.97438 * 13 11 10 29 29 H 1.09008 * 109.46975 * 299.99840 * 14 13 11 30 30 H 1.09007 * 109.47007 * 59.99239 * 14 13 11 31 31 H 1.08994 * 113.73523 * 336.32990 * 17 15 14 32 32 H 1.09008 * 113.72897 * 107.50024 * 17 15 14 33 33 H 1.08998 * 113.76061 * 138.03577 * 18 17 15 34 34 H 1.09004 * 113.75962 * 269.29659 * 18 17 15 35 35 H 1.08999 * 109.47028 * 29.35638 * 20 19 18 36 36 H 1.09000 * 109.46740 * 149.36205 * 20 19 18 37 37 H 1.08001 * 120.00410 * 304.99731 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.7104 1.3463 0.0006 5 1 1.8917 2.3964 -1.2124 6 1 1.8917 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 16 1.1292 -2.7280 -0.0086 10 6 2.5157 -3.8914 -0.0148 11 6 1.9872 -5.3027 -0.0216 12 8 0.7910 -5.5022 -0.0227 13 7 2.8440 -6.3431 -0.0265 14 6 2.3302 -7.7150 -0.0337 15 6 3.5021 -8.6986 -0.0388 16 1 4.0180 -8.7402 -0.9980 17 6 3.1532 -10.0823 0.5385 18 6 4.5193 -10.0228 1.2453 19 7 4.4079 -8.5525 1.1221 20 6 5.6899 -7.9594 0.7183 21 6 6.4861 -7.6001 1.9462 22 6 7.7048 -8.0654 2.0979 23 17 8.3983 -9.0948 0.8842 24 17 8.6223 -7.6509 3.5122 25 1 -0.4849 0.8401 0.0004 26 1 3.1244 -3.7267 -0.9039 27 1 3.1244 -3.7361 0.8761 28 1 3.8007 -6.1835 -0.0260 29 1 1.7212 -7.8796 0.8553 30 1 1.7219 -7.8705 -0.9248 31 1 2.3045 -10.0710 1.2223 32 1 3.0811 -10.8665 -0.2152 33 1 4.4970 -10.3801 2.2748 34 1 5.3341 -10.4535 0.6632 35 1 6.2499 -8.6777 0.1194 36 1 5.5050 -7.0610 0.1294 37 1 6.0546 -6.9600 2.7015 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001276792519.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:12:01 Heat of formation + Delta-G solvation = -22.794388 kcal Electronic energy + Delta-G solvation = -21539.983399 eV Core-core repulsion = 17916.874082 eV Total energy + Delta-G solvation = -3623.109316 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 338.036 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.37345 -40.22123 -38.43293 -37.55846 -35.66297 -34.91727 -34.57390 -31.57256 -30.33071 -28.68642 -27.61537 -25.26225 -24.20393 -21.81691 -21.31920 -20.59951 -19.79382 -18.06759 -17.86792 -17.38820 -17.04420 -16.87359 -16.43618 -16.31172 -15.85340 -15.55844 -15.11783 -14.75766 -14.60606 -14.42488 -14.23286 -13.57973 -13.36536 -13.15031 -12.99769 -12.89257 -12.62797 -12.61093 -12.49954 -12.46251 -12.29854 -12.00668 -11.81870 -11.76377 -11.66390 -11.15087 -10.91994 -10.26029 -10.07679 -10.03624 -9.81292 -8.65349 -8.34041 -6.11675 0.31681 0.47088 1.28201 1.38895 1.41935 1.48098 1.59130 1.64966 2.25012 2.29588 2.87298 3.00223 3.33336 3.53606 3.76026 3.83553 3.98333 4.10752 4.13137 4.28271 4.29934 4.34324 4.44373 4.51415 4.66025 4.74664 4.82301 4.89999 4.91165 5.01912 5.25026 5.29051 5.43026 5.50172 6.00208 6.20938 6.50907 7.07526 7.26811 8.75445 Molecular weight = 338.04amu Principal moments of inertia in cm(-1) A = 0.011514 B = 0.002555 C = 0.002165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2431.305875 B =10957.160986 C =12928.946793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.013 3.987 3 Si 0.999 3.001 4 H -0.257 1.257 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.545 4.545 8 H 0.082 0.918 9 S -0.150 6.150 10 C -0.130 4.130 11 C 0.533 3.467 12 O -0.566 6.566 13 N -0.707 5.707 14 C 0.140 3.860 15 C 0.025 3.975 16 H 0.107 0.893 17 C -0.128 4.128 18 C 0.006 3.994 19 N -0.483 5.483 20 C 0.037 3.963 21 C -0.088 4.088 22 C -0.054 4.054 23 Cl -0.040 7.040 24 Cl -0.045 7.045 25 H 0.271 0.729 26 H 0.109 0.891 27 H 0.107 0.893 28 H 0.409 0.591 29 H 0.058 0.942 30 H 0.069 0.931 31 H 0.090 0.910 32 H 0.097 0.903 33 H 0.090 0.910 34 H 0.085 0.915 35 H 0.077 0.923 36 H 0.099 0.901 37 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.324 -23.915 1.662 30.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.192 4.192 3 Si 0.820 3.180 4 H -0.180 1.180 5 H -0.199 1.199 6 H -0.200 1.200 7 C -0.693 4.693 8 H 0.100 0.900 9 S 0.077 5.923 10 C -0.281 4.281 11 C 0.318 3.682 12 O -0.445 6.445 13 N -0.360 5.360 14 C 0.016 3.984 15 C -0.084 4.084 16 H 0.124 0.876 17 C -0.166 4.166 18 C -0.122 4.122 19 N -0.206 5.206 20 C -0.091 4.091 21 C -0.108 4.108 22 C -0.108 4.108 23 Cl -0.012 7.012 24 Cl -0.017 7.017 25 H 0.080 0.920 26 H 0.127 0.873 27 H 0.125 0.875 28 H 0.246 0.754 29 H 0.077 0.923 30 H 0.087 0.913 31 H 0.109 0.891 32 H 0.115 0.885 33 H 0.108 0.892 34 H 0.103 0.897 35 H 0.095 0.905 36 H 0.117 0.883 37 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 17.160 -23.838 2.236 29.457 hybrid contribution 2.391 1.067 -0.463 2.659 sum 19.551 -22.771 1.773 30.065 Atomic orbital electron populations 1.70193 1.07963 1.28520 1.48113 1.26127 0.95965 1.03303 0.93779 0.84908 0.78623 0.76367 0.78068 1.18025 1.19910 1.19978 1.23236 0.95330 0.92022 1.58695 0.89954 1.85573 1.10538 0.99186 1.97023 1.23370 1.03545 0.94590 1.06600 1.20034 0.86250 0.86652 0.75215 1.90689 1.17359 1.86084 1.50319 1.45659 1.09881 1.05223 1.75268 1.21347 0.95918 0.79232 1.01868 1.23761 0.93989 0.95537 0.95114 0.87568 1.23321 0.98062 0.94989 1.00228 1.23983 0.97674 0.88013 1.02542 1.68492 1.08620 1.12426 1.31090 1.22041 0.91489 1.01901 0.93698 1.23182 0.91007 0.96815 0.99844 1.24098 0.94228 1.02722 0.89739 1.98402 1.84815 1.66008 1.51942 1.98435 1.74961 1.91700 1.36633 0.92008 0.87293 0.87504 0.75428 0.92336 0.91270 0.89138 0.88472 0.89156 0.89733 0.90483 0.88338 0.83265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.09 13.22 21.65 0.29 -55.80 16 2 C 0.01 0.74 5.49 84.86 0.47 1.20 16 3 Si 1.00 43.63 29.55 68.60 2.03 45.66 16 4 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 5 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 6 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 7 C -0.54 -31.14 9.50 67.96 0.65 -30.50 16 8 H 0.08 4.37 7.80 -2.91 -0.02 4.35 16 9 S -0.15 -8.37 20.57 -56.49 -1.16 -9.53 16 10 C -0.13 -5.13 6.16 71.23 0.44 -4.69 16 11 C 0.53 19.54 7.85 87.66 0.69 20.23 16 12 O -0.57 -26.18 15.86 -3.02 -0.05 -26.23 16 13 N -0.71 -17.40 5.50 -463.06 -2.55 -19.95 16 14 C 0.14 2.90 5.80 86.38 0.50 3.40 16 15 C 0.03 0.32 3.38 45.02 0.15 0.47 16 16 H 0.11 0.98 7.93 -2.39 -0.02 0.96 16 17 C -0.13 -1.23 7.84 31.24 0.24 -0.99 16 18 C 0.01 0.06 7.95 86.40 0.69 0.75 16 19 N -0.48 -6.33 5.83 -888.41 -5.18 -11.51 16 20 C 0.04 0.42 4.94 85.55 0.42 0.84 16 21 C -0.09 -1.16 9.56 25.32 0.24 -0.91 16 22 C -0.05 -0.75 6.97 67.45 0.47 -0.28 16 23 Cl -0.04 -0.50 26.92 -2.72 -0.07 -0.57 16 24 Cl -0.05 -0.70 29.06 -2.72 -0.08 -0.77 16 25 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 26 H 0.11 3.84 8.14 -2.40 -0.02 3.83 16 27 H 0.11 3.84 8.14 -2.39 -0.02 3.82 16 28 H 0.41 7.66 6.54 -92.71 -0.61 7.05 16 29 H 0.06 1.43 7.91 -2.38 -0.02 1.41 16 30 H 0.07 1.50 8.14 -2.38 -0.02 1.49 16 31 H 0.09 1.04 7.94 -2.39 -0.02 1.02 16 32 H 0.10 0.60 8.14 -2.38 -0.02 0.58 16 33 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.08 0.64 7.48 -2.39 -0.02 0.62 16 35 H 0.08 0.75 5.25 -2.39 -0.01 0.74 16 36 H 0.10 1.04 6.40 -2.39 -0.02 1.02 16 37 H 0.15 2.08 8.06 -2.91 -0.02 2.05 16 Total: -1.00 -74.94 357.61 -1.32 -76.25 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: 0.50 Total: 12.93 kcal Atomic # 6 Polarization: -15.43 SS G_CDS: 4.96 Total: -10.47 kcal Atomic # 7 Polarization: -79.82 SS G_CDS: -7.44 Total: -87.26 kcal Atomic # 8 Polarization: -26.18 SS G_CDS: -0.05 Total: -26.23 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Atomic # 16 Polarization: -8.37 SS G_CDS: -1.16 Total: -9.53 kcal Atomic # 17 Polarization: -1.20 SS G_CDS: -0.15 Total: -1.35 kcal Total: -74.94 -1.32 -76.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276792519.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.459 kcal (2) G-P(sol) polarization free energy of solvation -74.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds