Wall clock time and date at job start Tue Mar 31 2020 20:58:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86800 * 119.99891 * 2 1 4 4 H 1.48500 * 109.47260 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46998 * 299.99875 * 3 2 1 6 6 H 1.48498 * 109.47354 * 59.99731 * 3 2 1 7 7 C 1.38792 * 120.00411 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00526 * 180.02562 * 7 2 1 9 9 S 1.76206 * 119.99600 * 359.97438 * 7 2 1 10 10 C 1.81003 * 99.99593 * 180.02562 * 9 7 2 11 11 C 1.50706 * 109.46926 * 180.02562 * 10 9 7 12 12 O 1.21280 * 119.99914 * 0.02562 * 11 10 9 13 13 N 1.34773 * 120.00010 * 180.02562 * 11 10 9 14 14 C 1.46500 * 119.99980 * 180.27322 * 13 11 10 15 15 C 1.53003 * 109.47376 * 174.68441 * 14 13 11 16 16 N 1.46896 * 115.55016 * 275.42613 * 15 14 13 17 17 C 1.46904 * 110.99840 * 294.66836 * 16 15 14 18 18 C 1.50696 * 109.47080 * 181.11969 * 17 16 15 19 19 Cl 1.73595 * 120.00271 * 294.99619 * 18 17 16 20 20 C 1.31299 * 119.99857 * 115.00563 * 18 17 16 21 21 Cl 1.73604 * 119.99897 * 180.02562 * 20 18 17 22 22 C 1.53000 * 117.50253 * 129.75011 * 15 14 13 23 23 C 1.53003 * 117.49870 * 61.09132 * 15 14 13 24 24 H 0.97006 * 120.00261 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.47272 * 60.00568 * 10 9 7 26 26 H 1.08999 * 109.47412 * 299.99995 * 10 9 7 27 27 H 0.97002 * 120.00018 * 0.02562 * 13 11 10 28 28 H 1.09006 * 109.47249 * 294.68469 * 14 13 11 29 29 H 1.08997 * 109.47556 * 54.68177 * 14 13 11 30 30 H 1.00897 * 111.00449 * 170.71935 * 16 15 14 31 31 H 1.08996 * 109.47135 * 301.12146 * 17 16 15 32 32 H 1.09001 * 109.47037 * 61.12011 * 17 16 15 33 33 H 1.07998 * 119.99830 * 359.97438 * 20 18 17 34 34 H 1.09006 * 117.49503 * 0.02562 * 22 15 14 35 35 H 1.08993 * 117.50149 * 145.01944 * 22 15 14 36 36 H 1.08994 * 117.49614 * 214.98338 * 23 15 14 37 37 H 1.09003 * 117.49990 * 359.97438 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8915 2.3965 1.2124 7 6 2.0103 -1.2019 0.0005 8 1 3.0902 -1.2019 0.0010 9 16 1.1293 -2.7279 0.0019 10 6 2.5159 -3.8913 0.0029 11 6 1.9875 -5.3027 0.0036 12 8 0.7912 -5.5023 0.0029 13 7 2.8443 -6.3430 0.0049 14 6 2.3306 -7.7150 -0.0005 15 6 3.4974 -8.6960 -0.1313 16 7 3.9523 -8.9602 -1.5029 17 6 2.9104 -9.6444 -2.2804 18 6 3.4221 -9.9227 -3.6702 19 17 3.7915 -8.6057 -4.7391 20 6 3.5885 -11.1613 -4.0728 21 17 4.1786 -11.4819 -5.6737 22 6 3.5655 -9.8506 0.8703 23 6 4.5550 -8.6873 0.9743 24 1 -0.4851 0.8401 -0.0004 25 1 3.1245 -3.7305 0.8928 26 1 3.1246 -3.7320 -0.8872 27 1 3.8011 -6.1833 0.0059 28 1 1.7971 -7.9070 0.9305 29 1 1.6505 -7.8450 -0.8423 30 1 4.8106 -9.4906 -1.5034 31 1 2.6521 -10.5846 -1.7933 32 1 2.0257 -9.0105 -2.3391 33 1 3.3589 -11.9807 -3.4077 34 1 2.7786 -9.9115 1.6222 35 1 3.9480 -10.8061 0.5117 36 1 5.5881 -8.8781 0.6840 37 1 4.4197 -7.9825 1.7947 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277006737.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:58:08 Heat of formation + Delta-G solvation = -8.530300 kcal Electronic energy + Delta-G solvation = -21342.821004 eV Core-core repulsion = 17720.330225 eV Total energy + Delta-G solvation = -3622.490779 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 338.036 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.82995 -38.54588 -37.59702 -36.71783 -35.02954 -33.79587 -32.40044 -31.64002 -29.71820 -26.47396 -25.77816 -25.38874 -22.92562 -20.74755 -20.21676 -20.12349 -17.82612 -17.37350 -16.73574 -16.16477 -15.85073 -15.55057 -15.13930 -14.89876 -14.77829 -14.44545 -13.88734 -13.66021 -13.29014 -13.11589 -13.01056 -12.84938 -12.56227 -12.18133 -11.98202 -11.87571 -11.71604 -11.37795 -11.32263 -11.04890 -11.00179 -10.98833 -10.72915 -10.63232 -9.77637 -9.42280 -9.38524 -9.05034 -8.84947 -8.80887 -8.19434 -6.46321 -6.19049 -3.88966 0.99393 1.53927 1.96932 2.92509 3.15669 3.22524 3.23672 3.31655 3.38431 3.56604 3.87647 4.16329 4.21224 4.23269 4.39088 4.47349 4.70302 4.89324 5.04329 5.12411 5.16223 5.19592 5.29216 5.34043 5.46170 5.46886 5.59984 5.67077 5.81417 5.94988 6.19901 6.38048 6.66287 6.77380 7.62903 7.78930 8.38472 8.67003 9.26546 10.88437 Molecular weight = 338.04amu Principal moments of inertia in cm(-1) A = 0.014730 B = 0.002269 C = 0.002069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1900.487282 B =12337.347910 C =13528.165994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.073 3.927 3 Si 0.918 3.082 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.533 4.533 8 H 0.073 0.927 9 S -0.062 6.062 10 C -0.152 4.152 11 C 0.532 3.468 12 O -0.521 6.521 13 N -0.729 5.729 14 C 0.169 3.831 15 C 0.038 3.962 16 N -0.639 5.639 17 C 0.099 3.901 18 C -0.058 4.058 19 Cl -0.041 7.041 20 C -0.105 4.105 21 Cl -0.067 7.067 22 C -0.204 4.204 23 C -0.161 4.161 24 H 0.267 0.733 25 H 0.088 0.912 26 H 0.090 0.910 27 H 0.401 0.599 28 H 0.070 0.930 29 H 0.073 0.927 30 H 0.347 0.653 31 H 0.059 0.941 32 H 0.104 0.896 33 H 0.165 0.835 34 H 0.102 0.898 35 H 0.094 0.906 36 H 0.100 0.900 37 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.472 -26.857 -3.821 29.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.682 4.682 8 H 0.091 0.909 9 S 0.165 5.835 10 C -0.302 4.302 11 C 0.319 3.681 12 O -0.396 6.396 13 N -0.383 5.383 14 C 0.044 3.956 15 C -0.054 4.054 16 N -0.269 5.269 17 C -0.030 4.030 18 C -0.086 4.086 19 Cl -0.013 7.013 20 C -0.151 4.151 21 Cl -0.038 7.038 22 C -0.245 4.245 23 C -0.199 4.199 24 H 0.077 0.923 25 H 0.107 0.893 26 H 0.108 0.892 27 H 0.235 0.765 28 H 0.088 0.912 29 H 0.092 0.908 30 H 0.167 0.833 31 H 0.077 0.923 32 H 0.122 0.878 33 H 0.182 0.818 34 H 0.120 0.880 35 H 0.113 0.887 36 H 0.118 0.882 37 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 9.208 -26.360 -4.306 28.252 hybrid contribution 2.607 0.412 0.162 2.645 sum 11.816 -25.948 -4.144 28.811 Atomic orbital electron populations 1.70029 1.05940 1.27290 1.47079 1.24991 0.95026 0.99026 0.94607 0.86122 0.79608 0.81925 0.77868 1.19615 1.20582 1.20605 1.22909 0.94944 0.91653 1.58648 0.90888 1.85380 1.05062 0.96352 1.96704 1.23515 1.06462 0.95358 1.04912 1.20292 0.86467 0.86279 0.75102 1.90697 1.15409 1.85639 1.47870 1.45878 1.10138 1.04774 1.77531 1.20602 0.92674 0.80125 1.02195 1.21848 0.99451 0.99430 0.84714 1.60132 1.05373 1.51048 1.10302 1.21028 0.96011 0.98929 0.86993 1.23482 1.01356 0.89062 0.94728 1.98435 1.92215 1.47722 1.62900 1.24586 1.03609 0.97028 0.89905 1.98401 1.86259 1.95950 1.23216 1.23657 1.03373 0.93723 1.03698 1.23194 0.95585 1.01305 0.99795 0.92279 0.89321 0.89190 0.76485 0.91158 0.90836 0.83329 0.92290 0.87836 0.81793 0.87962 0.88709 0.88152 0.87448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.34 13.22 55.49 0.73 -25.61 16 2 C 0.07 2.09 5.49 -17.44 -0.10 1.99 16 3 Si 0.92 21.58 29.55 -169.99 -5.02 16.56 16 4 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 5 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.53 -15.31 9.50 30.94 0.29 -15.01 16 8 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 9 S -0.06 -1.69 20.57 -107.50 -2.21 -3.90 16 10 C -0.15 -3.09 6.16 36.01 0.22 -2.87 16 11 C 0.53 9.91 7.85 -10.98 -0.09 9.83 16 12 O -0.52 -11.78 15.86 5.56 0.09 -11.69 16 13 N -0.73 -9.61 5.49 -60.29 -0.33 -9.94 16 14 C 0.17 1.85 5.72 -4.04 -0.02 1.83 16 15 C 0.04 0.28 1.87 -131.60 -0.25 0.03 16 16 N -0.64 -4.55 6.67 -101.22 -0.67 -5.23 16 17 C 0.10 0.67 5.82 -4.98 -0.03 0.64 16 18 C -0.06 -0.43 6.01 -36.10 -0.22 -0.64 16 19 Cl -0.04 -0.42 27.81 -51.86 -1.44 -1.86 16 20 C -0.10 -0.63 10.43 28.94 0.30 -0.33 16 21 Cl -0.07 -0.51 27.92 -51.86 -1.45 -1.96 16 22 C -0.20 -1.17 10.07 -26.69 -0.27 -1.44 16 23 C -0.16 -1.01 9.69 -26.69 -0.26 -1.26 16 24 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 25 H 0.09 1.66 8.14 -51.92 -0.42 1.23 16 26 H 0.09 1.72 8.14 -51.92 -0.42 1.30 16 27 H 0.40 4.42 8.26 -40.82 -0.34 4.08 16 28 H 0.07 0.79 7.91 -51.93 -0.41 0.38 16 29 H 0.07 0.91 6.50 -51.93 -0.34 0.57 16 30 H 0.35 2.01 8.58 -39.29 -0.34 1.67 16 31 H 0.06 0.28 7.80 -51.93 -0.40 -0.13 16 32 H 0.10 0.87 6.65 -51.93 -0.35 0.53 16 33 H 0.16 0.54 7.85 -52.49 -0.41 0.12 16 34 H 0.10 0.61 8.06 -51.93 -0.42 0.19 16 35 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 365.43 15.07 5.51 5.51 Total: -1.00 -34.29 365.43 -9.87 -44.16 By element: Atomic # 1 Polarization: 5.87 SS G_CDS: -4.66 Total: 1.21 kcal Atomic # 6 Polarization: -6.83 SS G_CDS: -0.41 Total: -7.24 kcal Atomic # 7 Polarization: -40.51 SS G_CDS: -0.27 Total: -40.78 kcal Atomic # 8 Polarization: -11.78 SS G_CDS: 0.09 Total: -11.69 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.90 kcal Atomic # 17 Polarization: -0.94 SS G_CDS: -2.89 Total: -3.83 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -34.29 -9.87 -44.16 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277006737.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.633 kcal (2) G-P(sol) polarization free energy of solvation -34.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds