Wall clock time and date at job start Tue Mar 31 2020 20:58:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86800 * 119.99891 * 2 1 4 4 H 1.48500 * 109.47260 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46998 * 299.99875 * 3 2 1 6 6 H 1.48498 * 109.47354 * 59.99731 * 3 2 1 7 7 C 1.38792 * 120.00411 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00526 * 180.02562 * 7 2 1 9 9 S 1.76206 * 119.99600 * 359.97438 * 7 2 1 10 10 C 1.81003 * 99.99593 * 180.02562 * 9 7 2 11 11 C 1.50706 * 109.46926 * 180.02562 * 10 9 7 12 12 O 1.21280 * 119.99914 * 0.02562 * 11 10 9 13 13 N 1.34773 * 120.00010 * 180.02562 * 11 10 9 14 14 C 1.46500 * 119.99980 * 180.27322 * 13 11 10 15 15 C 1.53003 * 109.47376 * 174.68441 * 14 13 11 16 16 N 1.46896 * 115.55016 * 275.42613 * 15 14 13 17 17 C 1.46904 * 110.99840 * 294.66836 * 16 15 14 18 18 C 1.50696 * 109.47080 * 181.11969 * 17 16 15 19 19 Cl 1.73595 * 120.00271 * 294.99619 * 18 17 16 20 20 C 1.31299 * 119.99857 * 115.00563 * 18 17 16 21 21 Cl 1.73604 * 119.99897 * 180.02562 * 20 18 17 22 22 C 1.53000 * 117.50253 * 129.75011 * 15 14 13 23 23 C 1.53003 * 117.49870 * 61.09132 * 15 14 13 24 24 H 0.97006 * 120.00261 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.47272 * 60.00568 * 10 9 7 26 26 H 1.08999 * 109.47412 * 299.99995 * 10 9 7 27 27 H 0.97002 * 120.00018 * 0.02562 * 13 11 10 28 28 H 1.09006 * 109.47249 * 294.68469 * 14 13 11 29 29 H 1.08997 * 109.47556 * 54.68177 * 14 13 11 30 30 H 1.00897 * 111.00449 * 170.71935 * 16 15 14 31 31 H 1.08996 * 109.47135 * 301.12146 * 17 16 15 32 32 H 1.09001 * 109.47037 * 61.12011 * 17 16 15 33 33 H 1.07998 * 119.99830 * 359.97438 * 20 18 17 34 34 H 1.09006 * 117.49503 * 0.02562 * 22 15 14 35 35 H 1.08993 * 117.50149 * 145.01944 * 22 15 14 36 36 H 1.08994 * 117.49614 * 214.98338 * 23 15 14 37 37 H 1.09003 * 117.49990 * 359.97438 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8915 2.3965 1.2124 7 6 2.0103 -1.2019 0.0005 8 1 3.0902 -1.2019 0.0010 9 16 1.1293 -2.7279 0.0019 10 6 2.5159 -3.8913 0.0029 11 6 1.9875 -5.3027 0.0036 12 8 0.7912 -5.5023 0.0029 13 7 2.8443 -6.3430 0.0049 14 6 2.3306 -7.7150 -0.0005 15 6 3.4974 -8.6960 -0.1313 16 7 3.9523 -8.9602 -1.5029 17 6 2.9104 -9.6444 -2.2804 18 6 3.4221 -9.9227 -3.6702 19 17 3.7915 -8.6057 -4.7391 20 6 3.5885 -11.1613 -4.0728 21 17 4.1786 -11.4819 -5.6737 22 6 3.5655 -9.8506 0.8703 23 6 4.5550 -8.6873 0.9743 24 1 -0.4851 0.8401 -0.0004 25 1 3.1245 -3.7305 0.8928 26 1 3.1246 -3.7320 -0.8872 27 1 3.8011 -6.1833 0.0059 28 1 1.7971 -7.9070 0.9305 29 1 1.6505 -7.8450 -0.8423 30 1 4.8106 -9.4906 -1.5034 31 1 2.6521 -10.5846 -1.7933 32 1 2.0257 -9.0105 -2.3391 33 1 3.3589 -11.9807 -3.4077 34 1 2.7786 -9.9115 1.6222 35 1 3.9480 -10.8061 0.5117 36 1 5.5881 -8.8781 0.6840 37 1 4.4197 -7.9825 1.7947 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277006737.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:58:07 Heat of formation + Delta-G solvation = -33.121814 kcal Electronic energy + Delta-G solvation = -21343.887372 eV Core-core repulsion = 17720.330225 eV Total energy + Delta-G solvation = -3623.557147 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 338.036 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.83712 -39.59372 -38.20535 -37.32283 -35.70168 -34.94923 -34.57423 -32.16225 -31.23099 -27.86688 -27.28419 -26.29640 -23.42663 -21.62404 -21.25558 -20.86365 -19.75628 -17.94970 -17.85330 -17.41263 -16.87860 -16.76529 -16.36544 -16.09287 -15.89411 -15.66652 -15.00143 -14.65199 -14.40533 -14.25534 -14.15415 -13.76700 -13.53060 -13.22591 -13.15033 -12.90350 -12.84165 -12.58592 -12.54538 -12.39562 -11.96329 -11.89127 -11.70968 -11.65034 -11.23654 -11.15171 -10.88906 -10.26180 -10.09961 -9.95906 -9.35126 -8.65246 -8.34060 -6.11646 0.47263 0.97068 1.28011 1.41705 1.44013 1.47702 1.58978 1.65499 2.21869 2.28693 2.78004 3.00038 3.09121 3.34700 3.58272 3.63727 3.83442 3.94962 4.07324 4.21767 4.31469 4.44078 4.52005 4.53149 4.60747 4.69016 4.76964 4.79416 4.84285 5.02879 5.23103 5.42958 5.46771 5.84300 6.20962 6.33509 6.55795 7.07402 7.28251 8.75420 Molecular weight = 338.04amu Principal moments of inertia in cm(-1) A = 0.014730 B = 0.002269 C = 0.002069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1900.487282 B =12337.347910 C =13528.165994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.012 3.988 3 Si 0.999 3.001 4 H -0.257 1.257 5 H -0.274 1.274 6 H -0.273 1.273 7 C -0.544 4.544 8 H 0.082 0.918 9 S -0.151 6.151 10 C -0.128 4.128 11 C 0.534 3.466 12 O -0.568 6.568 13 N -0.702 5.702 14 C 0.166 3.834 15 C 0.031 3.969 16 N -0.647 5.647 17 C 0.104 3.896 18 C -0.070 4.070 19 Cl -0.075 7.075 20 C -0.086 4.086 21 Cl -0.082 7.082 22 C -0.186 4.186 23 C -0.156 4.156 24 H 0.271 0.729 25 H 0.109 0.891 26 H 0.105 0.895 27 H 0.415 0.585 28 H 0.069 0.931 29 H 0.058 0.942 30 H 0.359 0.641 31 H 0.087 0.913 32 H 0.081 0.919 33 H 0.200 0.800 34 H 0.100 0.900 35 H 0.115 0.885 36 H 0.115 0.885 37 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.981 -28.337 -3.178 31.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.192 4.192 3 Si 0.821 3.179 4 H -0.181 1.181 5 H -0.200 1.200 6 H -0.198 1.198 7 C -0.692 4.692 8 H 0.100 0.900 9 S 0.076 5.924 10 C -0.280 4.280 11 C 0.319 3.681 12 O -0.447 6.447 13 N -0.355 5.355 14 C 0.042 3.958 15 C -0.061 4.061 16 N -0.279 5.279 17 C -0.024 4.024 18 C -0.099 4.099 19 Cl -0.047 7.047 20 C -0.132 4.132 21 Cl -0.054 7.054 22 C -0.226 4.226 23 C -0.194 4.194 24 H 0.080 0.920 25 H 0.128 0.872 26 H 0.123 0.877 27 H 0.251 0.749 28 H 0.087 0.913 29 H 0.077 0.923 30 H 0.179 0.821 31 H 0.105 0.895 32 H 0.099 0.901 33 H 0.217 0.783 34 H 0.119 0.881 35 H 0.134 0.866 36 H 0.133 0.867 37 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 11.776 -27.887 -3.662 30.492 hybrid contribution 1.856 0.689 -0.020 1.980 sum 13.632 -27.197 -3.682 30.645 Atomic orbital electron populations 1.70189 1.07947 1.28517 1.48134 1.26129 0.95988 1.03323 0.93800 0.84904 0.78601 0.76343 0.78084 1.18069 1.19983 1.19831 1.23229 0.95311 0.92026 1.58658 0.90012 1.85545 1.10601 0.99209 1.97025 1.23356 1.03462 0.94580 1.06556 1.20013 0.86208 0.86638 0.75204 1.90684 1.17362 1.86115 1.50539 1.45660 1.10187 1.04748 1.74955 1.20720 0.94255 0.79304 1.01515 1.21511 0.99049 0.99994 0.85537 1.60030 1.05921 1.51890 1.10048 1.20965 0.95041 0.99684 0.86745 1.23592 1.03058 0.88481 0.94746 1.98426 1.92626 1.49540 1.64095 1.25033 1.01534 0.97455 0.89218 1.98409 1.86382 1.95943 1.24618 1.23709 1.02767 0.93976 1.02143 1.23267 0.96166 1.01392 0.98570 0.92009 0.87238 0.87716 0.74853 0.91315 0.92338 0.82063 0.89501 0.90089 0.78314 0.88132 0.86647 0.86667 0.88036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.50 13.22 21.65 0.29 -56.22 16 2 C 0.01 0.70 5.49 84.86 0.47 1.17 16 3 Si 1.00 44.11 29.55 68.60 2.03 46.14 16 4 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 5 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 6 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 7 C -0.54 -31.48 9.50 67.95 0.65 -30.83 16 8 H 0.08 4.41 7.80 -2.91 -0.02 4.39 16 9 S -0.15 -8.50 20.57 -56.49 -1.16 -9.66 16 10 C -0.13 -5.19 6.16 71.24 0.44 -4.75 16 11 C 0.53 19.90 7.85 87.66 0.69 20.59 16 12 O -0.57 -26.46 15.86 -3.03 -0.05 -26.50 16 13 N -0.70 -17.81 5.49 -463.05 -2.54 -20.35 16 14 C 0.17 3.50 5.72 86.38 0.49 3.99 16 15 C 0.03 0.39 1.87 3.53 0.01 0.40 16 16 N -0.65 -7.75 6.67 -474.15 -3.16 -10.92 16 17 C 0.10 1.21 5.82 85.56 0.50 1.71 16 18 C -0.07 -0.93 6.01 25.35 0.15 -0.78 16 19 Cl -0.08 -1.52 27.81 -2.72 -0.08 -1.59 16 20 C -0.09 -0.84 10.43 67.49 0.70 -0.13 16 21 Cl -0.08 -1.15 27.92 -2.72 -0.08 -1.23 16 22 C -0.19 -1.50 10.07 30.62 0.31 -1.19 16 23 C -0.16 -1.47 9.69 30.62 0.30 -1.17 16 24 H 0.27 15.53 8.31 -92.70 -0.77 14.76 16 25 H 0.11 3.96 8.14 -2.39 -0.02 3.94 16 26 H 0.10 3.92 8.14 -2.40 -0.02 3.90 16 27 H 0.41 8.32 8.26 -92.71 -0.77 7.55 16 28 H 0.07 1.50 7.91 -2.38 -0.02 1.48 16 29 H 0.06 1.45 6.50 -2.39 -0.02 1.43 16 30 H 0.36 3.03 8.58 -89.70 -0.77 2.26 16 31 H 0.09 0.52 7.80 -2.39 -0.02 0.50 16 32 H 0.08 1.33 6.65 -2.39 -0.02 1.32 16 33 H 0.20 0.49 7.85 -2.91 -0.02 0.47 16 34 H 0.10 0.90 8.06 -2.38 -0.02 0.88 16 35 H 0.12 0.52 8.14 -2.39 -0.02 0.50 16 36 H 0.12 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 Total: -1.00 -77.57 365.43 -0.47 -78.04 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: -0.42 Total: 13.29 kcal Atomic # 6 Polarization: -15.71 SS G_CDS: 4.70 Total: -11.01 kcal Atomic # 7 Polarization: -82.06 SS G_CDS: -5.41 Total: -87.48 kcal Atomic # 8 Polarization: -26.46 SS G_CDS: -0.05 Total: -26.50 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Atomic # 16 Polarization: -8.50 SS G_CDS: -1.16 Total: -9.66 kcal Atomic # 17 Polarization: -2.67 SS G_CDS: -0.15 Total: -2.82 kcal Total: -77.57 -0.47 -78.04 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277006737.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.919 kcal (2) G-P(sol) polarization free energy of solvation -77.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds