Wall clock time and date at job start Tue Mar 31 2020 20:58:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86791 * 120.00203 * 2 1 4 4 H 1.48500 * 109.47443 * 270.00081 * 3 2 1 5 5 H 1.48507 * 109.47411 * 30.00098 * 3 2 1 6 6 H 1.48501 * 109.47455 * 149.99983 * 3 2 1 7 7 C 1.38807 * 119.99742 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99996 * 0.02562 * 7 2 1 9 9 S 1.76199 * 119.99718 * 179.97438 * 7 2 1 10 10 C 1.80997 * 99.99848 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.47267 * 180.02562 * 10 9 7 12 12 O 1.21283 * 120.00029 * 0.02562 * 11 10 9 13 13 N 1.34770 * 119.99919 * 180.02562 * 11 10 9 14 14 C 1.46511 * 119.99872 * 180.27940 * 13 11 10 15 15 C 1.53001 * 109.47176 * 174.68190 * 14 13 11 16 16 N 1.46894 * 115.55188 * 275.46199 * 15 14 13 17 17 C 1.46904 * 110.99923 * 294.67455 * 16 15 14 18 18 C 1.50696 * 109.47080 * 181.16350 * 17 16 15 19 19 Cl 1.73595 * 120.00271 * 294.99619 * 18 17 16 20 20 C 1.31299 * 119.99857 * 115.00563 * 18 17 16 21 21 Cl 1.73595 * 119.99871 * 359.97438 * 20 18 17 22 22 C 1.53004 * 117.49581 * 129.78935 * 15 14 13 23 23 C 1.52998 * 117.49852 * 61.13308 * 15 14 13 24 24 H 0.96996 * 119.99747 * 0.02562 * 1 2 3 25 25 H 1.08998 * 109.47010 * 60.00398 * 10 9 7 26 26 H 1.09003 * 109.47649 * 300.00555 * 10 9 7 27 27 H 0.96999 * 120.00674 * 0.02562 * 13 11 10 28 28 H 1.09003 * 109.47061 * 294.68111 * 14 13 11 29 29 H 1.09001 * 109.46805 * 54.68171 * 14 13 11 30 30 H 1.00896 * 111.00106 * 170.71978 * 16 15 14 31 31 H 1.08996 * 109.47135 * 301.16526 * 17 16 15 32 32 H 1.09001 * 109.47037 * 61.16391 * 17 16 15 33 33 H 1.07998 * 119.99633 * 180.02562 * 20 18 17 34 34 H 1.08997 * 117.50256 * 0.02562 * 22 15 14 35 35 H 1.09001 * 117.49527 * 145.02234 * 22 15 14 36 36 H 1.09000 * 117.50070 * 214.97800 * 23 15 14 37 37 H 1.09007 * 117.49765 * 359.97148 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4979 2.0464 -1.4000 5 1 1.4479 2.6527 0.7001 6 1 3.5479 1.4401 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1374 0.0005 9 16 3.7723 -1.2021 -0.0001 10 6 4.0866 -2.9846 0.0001 11 6 5.5730 -3.2327 0.0002 12 8 6.3441 -2.2965 0.0006 13 7 6.0455 -4.4948 -0.0001 14 6 7.4907 -4.7360 0.0062 15 6 7.7567 -6.2369 0.1382 16 7 7.7566 -6.7622 1.5100 17 6 8.8691 -6.2015 2.2885 18 6 8.8533 -6.7838 3.6783 19 17 7.5270 -6.4459 4.7461 20 6 9.8429 -7.5467 4.0816 21 17 11.1691 -7.8849 3.0137 22 6 8.7238 -6.8735 -0.8621 23 6 7.2218 -7.1490 -0.9676 24 1 -0.4849 0.8400 -0.0004 25 1 3.6433 -3.4318 -0.8896 26 1 3.6439 -3.4315 0.8903 27 1 5.4290 -5.2436 -0.0007 28 1 7.9240 -4.3706 -0.9248 29 1 7.9428 -4.2114 0.8480 30 1 7.7867 -7.7707 1.5110 31 1 9.8131 -6.4473 1.8022 32 1 8.7619 -5.1183 2.3471 33 1 9.8314 -7.9644 5.0775 34 1 9.1708 -6.2230 -1.6138 35 1 9.3597 -7.6823 -0.5022 36 1 6.8701 -8.1390 -0.6772 37 1 6.6799 -6.6798 -1.7889 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277006738.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:58:11 Heat of formation + Delta-G solvation = -6.204220 kcal Electronic energy + Delta-G solvation = -21527.006023 eV Core-core repulsion = 17904.616110 eV Total energy + Delta-G solvation = -3622.389913 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 338.036 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.85846 -38.64098 -37.73308 -37.01590 -34.89359 -33.85916 -32.40775 -31.68189 -29.84493 -26.52039 -25.88731 -25.53505 -22.90494 -20.63039 -20.30655 -20.13155 -17.85267 -17.50473 -16.75964 -16.26699 -15.94242 -15.57718 -15.15482 -14.98323 -14.89439 -14.44960 -13.79755 -13.61103 -13.36780 -13.19915 -13.11021 -12.85488 -12.76031 -12.18770 -12.16967 -11.95854 -11.82934 -11.71028 -11.37142 -11.23449 -10.98459 -10.96763 -10.60836 -10.56058 -9.83060 -9.49502 -9.47281 -8.98343 -8.89203 -8.78025 -8.46124 -6.87898 -6.26093 -3.97199 0.94476 1.07098 2.31998 2.76105 3.03602 3.12076 3.34860 3.40342 3.53029 3.57441 3.81804 4.04318 4.22457 4.35816 4.37071 4.50056 4.76410 4.79841 5.01308 5.12240 5.12987 5.19362 5.23009 5.32632 5.37610 5.47635 5.48849 5.67514 5.72366 5.83055 6.07738 6.40732 6.58922 6.80242 7.70558 7.97170 8.44998 8.55818 9.20243 10.83203 Molecular weight = 338.04amu Principal moments of inertia in cm(-1) A = 0.017537 B = 0.002361 C = 0.002217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.284615 B =11854.353465 C =12624.990007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.095 3.905 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.275 1.275 6 H -0.235 1.235 7 C -0.520 4.520 8 H 0.088 0.912 9 S -0.143 6.143 10 C -0.122 4.122 11 C 0.531 3.469 12 O -0.524 6.524 13 N -0.726 5.726 14 C 0.169 3.831 15 C 0.038 3.962 16 N -0.637 5.637 17 C 0.081 3.919 18 C -0.054 4.054 19 Cl -0.034 7.034 20 C -0.102 4.102 21 Cl -0.064 7.064 22 C -0.203 4.203 23 C -0.161 4.161 24 H 0.270 0.730 25 H 0.096 0.904 26 H 0.097 0.903 27 H 0.402 0.598 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.347 0.653 31 H 0.070 0.930 32 H 0.100 0.900 33 H 0.160 0.840 34 H 0.101 0.899 35 H 0.095 0.905 36 H 0.100 0.900 37 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.916 -21.350 4.872 30.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.114 4.114 3 Si 0.682 3.318 4 H -0.193 1.193 5 H -0.200 1.200 6 H -0.159 1.159 7 C -0.668 4.668 8 H 0.106 0.894 9 S 0.083 5.917 10 C -0.273 4.273 11 C 0.317 3.683 12 O -0.399 6.399 13 N -0.380 5.380 14 C 0.045 3.955 15 C -0.055 4.055 16 N -0.266 5.266 17 C -0.047 4.047 18 C -0.082 4.082 19 Cl -0.006 7.006 20 C -0.149 4.149 21 Cl -0.035 7.035 22 C -0.244 4.244 23 C -0.199 4.199 24 H 0.080 0.920 25 H 0.114 0.886 26 H 0.116 0.884 27 H 0.237 0.763 28 H 0.089 0.911 29 H 0.092 0.908 30 H 0.166 0.834 31 H 0.087 0.913 32 H 0.118 0.882 33 H 0.178 0.822 34 H 0.120 0.880 35 H 0.114 0.886 36 H 0.119 0.881 37 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 22.562 -19.206 5.129 30.070 hybrid contribution -0.395 -1.312 -0.245 1.392 sum 22.167 -20.518 4.884 30.598 Atomic orbital electron populations 1.69942 1.05912 1.27716 1.48214 1.24720 0.94453 0.98964 0.93239 0.86731 0.81924 0.83281 0.79892 1.19250 1.19995 1.15893 1.22326 0.88327 0.97515 1.58588 0.89392 1.84767 1.09201 1.00260 1.97422 1.23261 0.94087 1.04170 1.05788 1.20259 0.90560 0.82248 0.75242 1.90695 1.58772 1.42290 1.48120 1.45841 1.06975 1.08023 1.77196 1.20610 0.82480 0.90239 1.02202 1.21823 1.04710 0.94061 0.84876 1.60159 1.44137 1.12188 1.10145 1.21273 0.94334 1.01390 0.87720 1.23209 0.90979 0.99229 0.94792 1.98440 1.45264 1.93739 1.63149 1.24464 0.90365 1.01879 0.98176 1.98385 1.46131 1.93780 1.65253 1.23650 0.93161 1.03945 1.03608 1.23194 0.96467 1.00476 0.99736 0.91984 0.88596 0.88442 0.76326 0.91129 0.90813 0.83429 0.91263 0.88223 0.82227 0.88031 0.88637 0.88147 0.87480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.78 13.97 55.49 0.78 -26.01 16 2 C 0.09 2.79 5.50 -17.43 -0.10 2.70 16 3 Si 0.86 21.97 27.74 -169.99 -4.71 17.26 16 4 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.23 -6.02 6.74 56.52 0.38 -5.64 16 7 C -0.52 -15.10 10.04 30.94 0.31 -14.79 16 8 H 0.09 2.66 8.03 -52.49 -0.42 2.24 16 9 S -0.14 -3.66 18.55 -107.50 -1.99 -5.65 16 10 C -0.12 -2.39 6.16 36.01 0.22 -2.17 16 11 C 0.53 9.45 7.85 -10.99 -0.09 9.36 16 12 O -0.52 -11.30 15.86 5.55 0.09 -11.21 16 13 N -0.73 -9.25 5.49 -60.29 -0.33 -9.58 16 14 C 0.17 1.84 5.72 -4.04 -0.02 1.82 16 15 C 0.04 0.29 1.87 -131.60 -0.25 0.04 16 16 N -0.64 -4.78 6.67 -101.22 -0.67 -5.46 16 17 C 0.08 0.61 5.68 -4.98 -0.03 0.58 16 18 C -0.05 -0.39 6.00 -36.10 -0.22 -0.61 16 19 Cl -0.03 -0.31 28.99 -51.86 -1.50 -1.81 16 20 C -0.10 -0.60 10.54 28.94 0.31 -0.30 16 21 Cl -0.06 -0.39 26.97 -51.86 -1.40 -1.79 16 22 C -0.20 -1.28 10.07 -26.69 -0.27 -1.55 16 23 C -0.16 -1.04 9.69 -26.70 -0.26 -1.30 16 24 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 25 H 0.10 1.73 8.14 -51.92 -0.42 1.31 16 26 H 0.10 1.80 8.14 -51.91 -0.42 1.38 16 27 H 0.40 4.28 8.27 -40.82 -0.34 3.94 16 28 H 0.07 0.78 7.91 -51.93 -0.41 0.37 16 29 H 0.07 0.90 6.50 -51.93 -0.34 0.57 16 30 H 0.35 2.21 8.58 -39.29 -0.34 1.88 16 31 H 0.07 0.47 6.01 -51.93 -0.31 0.16 16 32 H 0.10 0.90 6.65 -51.93 -0.35 0.56 16 33 H 0.16 0.71 8.06 -52.49 -0.42 0.28 16 34 H 0.10 0.65 8.06 -51.93 -0.42 0.23 16 35 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.11 0.74 8.14 -51.92 -0.42 0.31 16 LS Contribution 361.36 15.07 5.45 5.45 Total: -1.00 -33.31 361.36 -9.30 -42.62 By element: Atomic # 1 Polarization: 7.00 SS G_CDS: -4.61 Total: 2.39 kcal Atomic # 6 Polarization: -5.82 SS G_CDS: -0.39 Total: -6.21 kcal Atomic # 7 Polarization: -40.81 SS G_CDS: -0.23 Total: -41.04 kcal Atomic # 8 Polarization: -11.30 SS G_CDS: 0.09 Total: -11.21 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.71 Total: 17.26 kcal Atomic # 16 Polarization: -3.66 SS G_CDS: -1.99 Total: -5.65 kcal Atomic # 17 Polarization: -0.69 SS G_CDS: -2.90 Total: -3.60 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.31 -9.30 -42.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277006738.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.411 kcal (2) G-P(sol) polarization free energy of solvation -33.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds