Wall clock time and date at job start Tue Mar 31 2020 20:58:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86791 * 120.00203 * 2 1 4 4 H 1.48500 * 109.47443 * 270.00081 * 3 2 1 5 5 H 1.48507 * 109.47411 * 30.00098 * 3 2 1 6 6 H 1.48501 * 109.47455 * 149.99983 * 3 2 1 7 7 C 1.38807 * 119.99742 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99996 * 0.02562 * 7 2 1 9 9 S 1.76199 * 119.99718 * 179.97438 * 7 2 1 10 10 C 1.80997 * 99.99848 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.47267 * 180.02562 * 10 9 7 12 12 O 1.21283 * 120.00029 * 0.02562 * 11 10 9 13 13 N 1.34770 * 119.99919 * 180.02562 * 11 10 9 14 14 C 1.46511 * 119.99872 * 180.27940 * 13 11 10 15 15 C 1.53001 * 109.47176 * 174.68190 * 14 13 11 16 16 N 1.46894 * 115.55188 * 275.46199 * 15 14 13 17 17 C 1.46904 * 110.99923 * 294.67455 * 16 15 14 18 18 C 1.50696 * 109.47080 * 181.16350 * 17 16 15 19 19 Cl 1.73595 * 120.00271 * 294.99619 * 18 17 16 20 20 C 1.31299 * 119.99857 * 115.00563 * 18 17 16 21 21 Cl 1.73595 * 119.99871 * 359.97438 * 20 18 17 22 22 C 1.53004 * 117.49581 * 129.78935 * 15 14 13 23 23 C 1.52998 * 117.49852 * 61.13308 * 15 14 13 24 24 H 0.96996 * 119.99747 * 0.02562 * 1 2 3 25 25 H 1.08998 * 109.47010 * 60.00398 * 10 9 7 26 26 H 1.09003 * 109.47649 * 300.00555 * 10 9 7 27 27 H 0.96999 * 120.00674 * 0.02562 * 13 11 10 28 28 H 1.09003 * 109.47061 * 294.68111 * 14 13 11 29 29 H 1.09001 * 109.46805 * 54.68171 * 14 13 11 30 30 H 1.00896 * 111.00106 * 170.71978 * 16 15 14 31 31 H 1.08996 * 109.47135 * 301.16526 * 17 16 15 32 32 H 1.09001 * 109.47037 * 61.16391 * 17 16 15 33 33 H 1.07998 * 119.99633 * 180.02562 * 20 18 17 34 34 H 1.08997 * 117.50256 * 0.02562 * 22 15 14 35 35 H 1.09001 * 117.49527 * 145.02234 * 22 15 14 36 36 H 1.09000 * 117.50070 * 214.97800 * 23 15 14 37 37 H 1.09007 * 117.49765 * 359.97148 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4979 2.0464 -1.4000 5 1 1.4479 2.6527 0.7001 6 1 3.5479 1.4401 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1374 0.0005 9 16 3.7723 -1.2021 -0.0001 10 6 4.0866 -2.9846 0.0001 11 6 5.5730 -3.2327 0.0002 12 8 6.3441 -2.2965 0.0006 13 7 6.0455 -4.4948 -0.0001 14 6 7.4907 -4.7360 0.0062 15 6 7.7567 -6.2369 0.1382 16 7 7.7566 -6.7622 1.5100 17 6 8.8691 -6.2015 2.2885 18 6 8.8533 -6.7838 3.6783 19 17 7.5270 -6.4459 4.7461 20 6 9.8429 -7.5467 4.0816 21 17 11.1691 -7.8849 3.0137 22 6 8.7238 -6.8735 -0.8621 23 6 7.2218 -7.1490 -0.9676 24 1 -0.4849 0.8400 -0.0004 25 1 3.6433 -3.4318 -0.8896 26 1 3.6439 -3.4315 0.8903 27 1 5.4290 -5.2436 -0.0007 28 1 7.9240 -4.3706 -0.9248 29 1 7.9428 -4.2114 0.8480 30 1 7.7867 -7.7707 1.5110 31 1 9.8131 -6.4473 1.8022 32 1 8.7619 -5.1183 2.3471 33 1 9.8314 -7.9644 5.0775 34 1 9.1708 -6.2230 -1.6138 35 1 9.3597 -7.6823 -0.5022 36 1 6.8701 -8.1390 -0.6772 37 1 6.6799 -6.6798 -1.7889 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277006738.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:58:11 Heat of formation + Delta-G solvation = -29.773929 kcal Electronic energy + Delta-G solvation = -21528.028082 eV Core-core repulsion = 17904.616110 eV Total energy + Delta-G solvation = -3623.411972 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 338.036 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.87556 -39.64340 -38.31536 -37.57964 -35.60044 -34.94323 -34.65717 -32.22200 -31.30657 -27.95765 -27.41922 -26.45209 -23.44943 -21.66987 -21.15957 -20.89843 -19.80294 -18.07957 -17.91880 -17.45496 -17.10579 -16.79921 -16.45532 -16.11350 -15.85454 -15.61814 -15.03113 -14.91297 -14.58632 -14.31029 -14.12890 -13.87791 -13.51728 -13.34353 -13.26974 -12.99119 -12.86880 -12.76042 -12.61877 -12.42279 -12.25574 -11.98192 -11.85441 -11.53343 -11.24998 -11.16139 -10.92177 -10.52252 -10.12715 -9.98948 -9.35417 -8.97998 -8.50644 -6.21009 0.42621 0.52686 1.00166 1.31855 1.47624 1.56489 1.60570 1.79156 2.17831 2.26294 2.67481 2.77943 2.87504 3.06226 3.48034 3.59324 3.74365 3.89176 4.01517 4.18988 4.25069 4.45110 4.49381 4.59039 4.60197 4.66159 4.73900 4.76955 4.82210 5.00607 5.20589 5.42694 5.71859 5.81831 6.12594 6.29206 6.51861 6.94564 7.22705 8.61828 Molecular weight = 338.04amu Principal moments of inertia in cm(-1) A = 0.017537 B = 0.002361 C = 0.002217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.284615 B =11854.353465 C =12624.990007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.044 3.956 3 Si 0.915 3.085 4 H -0.262 1.262 5 H -0.259 1.259 6 H -0.237 1.237 7 C -0.528 4.528 8 H 0.062 0.938 9 S -0.175 6.175 10 C -0.110 4.110 11 C 0.535 3.465 12 O -0.566 6.566 13 N -0.701 5.701 14 C 0.168 3.832 15 C 0.030 3.970 16 N -0.641 5.641 17 C 0.086 3.914 18 C -0.066 4.066 19 Cl -0.053 7.053 20 C -0.085 4.085 21 Cl -0.061 7.061 22 C -0.190 4.190 23 C -0.153 4.153 24 H 0.277 0.723 25 H 0.113 0.887 26 H 0.110 0.890 27 H 0.416 0.584 28 H 0.071 0.929 29 H 0.059 0.941 30 H 0.356 0.644 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.177 0.823 34 H 0.101 0.899 35 H 0.108 0.892 36 H 0.114 0.886 37 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.597 -22.895 4.701 33.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.161 4.161 3 Si 0.737 3.263 4 H -0.186 1.186 5 H -0.184 1.184 6 H -0.161 1.161 7 C -0.676 4.676 8 H 0.080 0.920 9 S 0.052 5.948 10 C -0.261 4.261 11 C 0.320 3.680 12 O -0.444 6.444 13 N -0.354 5.354 14 C 0.044 3.956 15 C -0.062 4.062 16 N -0.272 5.272 17 C -0.043 4.043 18 C -0.095 4.095 19 Cl -0.025 7.025 20 C -0.132 4.132 21 Cl -0.033 7.033 22 C -0.230 4.230 23 C -0.190 4.190 24 H 0.086 0.914 25 H 0.132 0.868 26 H 0.128 0.872 27 H 0.252 0.748 28 H 0.089 0.911 29 H 0.078 0.922 30 H 0.176 0.824 31 H 0.096 0.904 32 H 0.098 0.902 33 H 0.194 0.806 34 H 0.120 0.880 35 H 0.126 0.874 36 H 0.133 0.867 37 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 24.243 -20.815 4.957 32.335 hybrid contribution -0.843 -1.028 -0.202 1.345 sum 23.400 -21.844 4.755 32.362 Atomic orbital electron populations 1.70020 1.07296 1.28996 1.49235 1.25577 0.95292 1.02281 0.92938 0.85859 0.80670 0.79562 0.80233 1.18624 1.18379 1.16084 1.22466 0.90297 0.96668 1.58125 0.92000 1.84682 1.06354 1.06241 1.97572 1.23251 0.96034 0.99506 1.07282 1.19916 0.89325 0.83354 0.75361 1.90684 1.59271 1.43859 1.50623 1.45642 1.08397 1.06602 1.74739 1.20702 0.80579 0.92668 1.01633 1.21557 1.06846 0.92233 0.85594 1.60096 1.44348 1.12803 1.09971 1.21182 0.94731 1.00260 0.88092 1.23133 0.91170 1.00623 0.94539 1.98433 1.46313 1.93998 1.63722 1.24655 0.89466 1.00468 0.98565 1.98393 1.45897 1.93632 1.65339 1.23678 0.93263 1.03671 1.02400 1.23268 0.96632 1.00589 0.98554 0.91388 0.86848 0.87217 0.74756 0.91111 0.92236 0.82390 0.90427 0.90176 0.80615 0.88023 0.87379 0.86743 0.87701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.32 13.97 21.65 0.30 -56.02 16 2 C 0.04 2.63 5.50 84.86 0.47 3.10 16 3 Si 0.91 45.45 27.74 68.60 1.90 47.35 16 4 H -0.26 -12.64 7.11 99.48 0.71 -11.93 16 5 H -0.26 -12.09 7.11 99.48 0.71 -11.38 16 6 H -0.24 -11.77 6.74 99.48 0.67 -11.10 16 7 C -0.53 -31.05 10.04 67.96 0.68 -30.37 16 8 H 0.06 3.83 8.03 -2.91 -0.02 3.81 16 9 S -0.18 -8.95 18.55 -56.49 -1.05 -10.00 16 10 C -0.11 -4.20 6.16 71.24 0.44 -3.76 16 11 C 0.54 18.57 7.85 87.66 0.69 19.26 16 12 O -0.57 -24.29 15.86 -3.04 -0.05 -24.34 16 13 N -0.70 -16.81 5.49 -463.03 -2.54 -19.35 16 14 C 0.17 3.46 5.72 86.38 0.49 3.95 16 15 C 0.03 0.40 1.87 3.53 0.01 0.41 16 16 N -0.64 -8.48 6.67 -474.16 -3.16 -11.64 16 17 C 0.09 1.19 5.68 85.56 0.49 1.67 16 18 C -0.07 -0.88 6.00 25.35 0.15 -0.72 16 19 Cl -0.05 -0.91 28.99 -2.72 -0.08 -0.98 16 20 C -0.09 -0.85 10.54 67.49 0.71 -0.13 16 21 Cl -0.06 -0.62 26.97 -2.72 -0.07 -0.69 16 22 C -0.19 -1.88 10.07 30.62 0.31 -1.57 16 23 C -0.15 -1.55 9.69 30.62 0.30 -1.25 16 24 H 0.28 15.69 8.31 -92.71 -0.77 14.92 16 25 H 0.11 3.95 8.14 -2.40 -0.02 3.93 16 26 H 0.11 3.94 8.14 -2.39 -0.02 3.92 16 27 H 0.42 7.91 8.27 -92.71 -0.77 7.15 16 28 H 0.07 1.49 7.91 -2.39 -0.02 1.47 16 29 H 0.06 1.44 6.50 -2.39 -0.02 1.43 16 30 H 0.36 3.67 8.58 -89.70 -0.77 2.90 16 31 H 0.08 0.92 6.01 -2.39 -0.01 0.91 16 32 H 0.08 1.43 6.65 -2.39 -0.02 1.42 16 33 H 0.18 1.17 8.06 -2.91 -0.02 1.15 16 34 H 0.10 1.05 8.06 -2.39 -0.02 1.03 16 35 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.10 1.15 8.14 -2.38 -0.02 1.13 16 Total: -1.00 -72.17 361.36 -0.46 -72.64 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: -0.45 Total: 12.45 kcal Atomic # 6 Polarization: -14.15 SS G_CDS: 4.73 Total: -9.42 kcal Atomic # 7 Polarization: -81.61 SS G_CDS: -5.40 Total: -87.01 kcal Atomic # 8 Polarization: -24.29 SS G_CDS: -0.05 Total: -24.34 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 1.90 Total: 47.35 kcal Atomic # 16 Polarization: -8.95 SS G_CDS: -1.05 Total: -10.00 kcal Atomic # 17 Polarization: -1.52 SS G_CDS: -0.15 Total: -1.67 kcal Total: -72.17 -0.46 -72.64 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277006738.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.864 kcal (2) G-P(sol) polarization free energy of solvation -72.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds