Wall clock time and date at job start Tue Mar 31 2020 21:21:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.31781 * 119.07715 * 2 1 4 4 C 1.32658 * 120.98599 * 180.02562 * 3 2 1 5 5 Cl 1.73595 * 120.41990 * 179.97438 * 4 3 2 6 6 C 1.38324 * 119.16413 * 359.97438 * 4 3 2 7 7 C 1.39520 * 118.32255 * 0.02562 * 6 4 3 8 8 N 1.38561 * 120.52254 * 179.97438 * 7 6 4 9 9 N 1.40101 * 120.00029 * 179.97438 * 8 7 6 10 10 C 1.34780 * 119.99797 * 180.02562 * 9 8 7 11 11 O 1.21754 * 119.99837 * 359.97438 * 10 9 8 12 12 C 1.46238 * 119.99763 * 179.97438 * 10 9 8 13 13 S 1.75669 * 125.22661 * 0.02644 * 12 10 9 14 14 C 1.75477 * 92.08968 * 179.97438 * 13 12 10 15 15 C 1.32771 * 111.36123 * 359.97438 * 14 13 12 16 16 C 1.39547 * 125.22797 * 179.97438 * 12 10 9 17 17 C 1.40544 * 123.71445 * 359.97438 * 16 12 10 18 18 H 1.08004 * 119.99890 * 336.53627 * 17 16 12 19 19 C 1.40302 * 119.99637 * 156.53430 * 17 16 12 20 20 N 1.30632 * 120.00404 * 350.14951 * 19 17 16 21 21 Si 1.86800 * 119.99685 * 170.14979 * 19 17 16 22 22 H 1.48501 * 109.47057 * 59.99934 * 21 19 17 23 23 H 1.48501 * 109.47301 * 179.97438 * 21 19 17 24 24 H 1.48505 * 109.47168 * 300.00230 * 21 19 17 25 25 N 1.31739 * 119.07123 * 180.25909 * 2 1 3 26 26 H 1.08999 * 109.46923 * 89.99830 * 1 2 3 27 27 H 1.08998 * 109.47252 * 210.00270 * 1 2 3 28 28 H 1.09009 * 109.46606 * 329.99920 * 1 2 3 29 29 H 1.07998 * 120.83487 * 180.02562 * 6 4 3 30 30 H 0.97006 * 120.00065 * 359.97438 * 8 7 6 31 31 H 0.96996 * 119.99941 * 359.97438 * 9 8 7 32 32 H 1.07995 * 124.31985 * 179.97438 * 14 13 12 33 33 H 1.07999 * 122.78358 * 180.02562 * 15 14 13 34 34 H 0.97005 * 120.00157 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1475 1.1517 0.0000 4 6 3.4734 1.1959 -0.0005 5 17 4.3020 2.7213 -0.0012 6 6 4.1873 0.0111 -0.0005 7 6 3.4770 -1.1897 -0.0005 8 7 4.1461 -2.4031 -0.0010 9 7 3.4218 -3.6024 -0.0005 10 6 4.0727 -4.7826 -0.0005 11 8 5.2900 -4.8065 -0.0014 12 6 3.3167 -6.0344 0.0006 13 16 1.5645 -6.1600 0.0014 14 6 1.6261 -7.9137 0.0018 15 6 2.8788 -8.3537 0.0008 16 6 3.8764 -7.3128 0.0002 17 6 5.2602 -7.5585 -0.0018 18 1 5.9413 -6.8082 -0.3756 19 6 5.7567 -8.7784 0.4817 20 7 4.9622 -9.6048 1.1080 21 14 7.5540 -9.2208 0.2299 22 1 8.4114 -8.1998 0.8841 23 1 7.8249 -10.5519 0.8298 24 1 7.8548 -9.2619 -1.2238 25 7 2.1472 -1.1514 -0.0052 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3634 -0.8899 0.5139 28 1 -0.3633 0.8901 0.5139 29 1 5.2673 0.0156 -0.0005 30 1 5.1159 -2.4222 -0.0018 31 1 2.4520 -3.5833 0.0006 32 1 0.7560 -8.5535 0.0027 33 1 3.1296 -9.4041 0.0004 34 1 5.3054 -10.4484 1.4419 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001299511358.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:21:16 Heat of formation + Delta-G solvation = 62.051869 kcal Electronic energy + Delta-G solvation = -22981.505269 eV Core-core repulsion = 19260.967668 eV Total energy + Delta-G solvation = -3720.537601 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 338.034 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.09571 -38.76906 -37.06388 -36.56136 -35.64302 -33.22960 -33.19363 -32.94703 -30.23173 -29.01326 -28.38562 -26.19545 -23.71792 -22.96830 -22.32888 -20.65247 -19.06888 -18.61295 -18.16466 -17.05241 -16.42893 -15.68127 -15.62970 -15.57694 -15.33023 -14.95552 -14.19431 -14.11766 -13.82970 -13.63698 -13.16703 -12.78320 -12.60299 -12.51619 -12.41603 -12.02617 -11.63214 -11.60992 -11.44325 -11.30603 -11.09784 -10.88028 -10.58621 -10.32153 -10.05564 -9.76421 -9.48555 -9.45885 -9.38693 -8.84046 -7.75707 -7.46682 -7.26648 -7.19837 -4.70741 0.76572 1.13103 1.42724 2.00183 2.25073 2.89472 2.90155 2.94017 3.01241 3.48466 3.58620 3.67158 3.68294 3.72238 4.09661 4.18904 4.71620 4.83575 5.08265 5.14524 5.22310 5.45439 5.57645 5.70440 5.92349 6.06156 6.31529 6.64871 6.68333 6.96890 7.02825 7.08537 7.30692 7.49854 7.65954 8.08110 8.15459 8.21497 8.40555 8.54549 9.26882 9.69228 Molecular weight = 338.03amu Principal moments of inertia in cm(-1) A = 0.016545 B = 0.002820 C = 0.002423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1691.975277 B = 9926.639981 C =11551.455417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.387 3.613 3 N -0.567 5.567 4 C 0.260 3.740 5 Cl -0.021 7.021 6 C -0.286 4.286 7 C 0.457 3.543 8 N -0.483 5.483 9 N -0.540 5.540 10 C 0.601 3.399 11 O -0.565 6.565 12 C -0.428 4.428 13 S -0.044 6.044 14 C -0.199 4.199 15 C -0.101 4.101 16 C 0.146 3.854 17 C -0.370 4.370 18 H 0.113 0.887 19 C 0.067 3.933 20 N -0.769 5.769 21 Si 0.928 3.072 22 H -0.258 1.258 23 H -0.275 1.275 24 H -0.258 1.258 25 N -0.578 5.578 26 H 0.089 0.911 27 H 0.090 0.910 28 H 0.088 0.912 29 H 0.153 0.847 30 H 0.444 0.556 31 H 0.426 0.574 32 H 0.140 0.860 33 H 0.147 0.853 34 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.796 11.405 -1.339 12.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.118 3.882 3 N -0.291 5.291 4 C 0.091 3.909 5 Cl 0.007 6.993 6 C -0.317 4.317 7 C 0.209 3.791 8 N -0.205 5.205 9 N -0.290 5.290 10 C 0.400 3.600 11 O -0.447 6.447 12 C -0.549 4.549 13 S 0.210 5.790 14 C -0.333 4.333 15 C -0.133 4.133 16 C 0.134 3.866 17 C -0.400 4.400 18 H 0.130 0.870 19 C -0.156 4.156 20 N -0.393 5.393 21 Si 0.751 3.249 22 H -0.182 1.182 23 H -0.199 1.199 24 H -0.182 1.182 25 N -0.305 5.305 26 H 0.108 0.892 27 H 0.109 0.891 28 H 0.106 0.894 29 H 0.171 0.829 30 H 0.289 0.711 31 H 0.268 0.732 32 H 0.158 0.842 33 H 0.165 0.835 34 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -5.027 12.067 -1.216 13.129 hybrid contribution 2.709 -1.165 0.060 2.949 sum -2.318 10.902 -1.156 11.206 Atomic orbital electron populations 1.20619 0.85059 1.04454 1.04205 1.22839 0.97552 0.81168 0.86607 1.67643 1.07832 1.30651 1.22933 1.21389 0.89730 0.87180 0.92576 1.98414 1.75369 1.29444 1.96055 1.21469 1.02514 0.90100 1.17649 1.18194 0.88619 0.84599 0.87686 1.43145 1.07162 0.94899 1.75320 1.45235 1.07835 0.94963 1.80990 1.17036 0.86872 0.80105 0.76025 1.90672 1.13231 1.86099 1.54721 1.22094 0.92184 0.93697 1.46892 1.82867 1.07072 1.04042 1.84993 1.24993 1.00438 0.96796 1.11037 1.21698 0.91016 1.01114 0.99500 1.17876 0.93597 0.87948 0.87150 1.20083 0.92721 0.99042 1.28171 0.86966 1.26424 1.01931 0.95009 0.92285 1.69651 1.38182 1.08607 1.22833 0.86004 0.80205 0.78336 0.80373 1.18156 1.19947 1.18204 1.67751 1.07094 1.31044 1.24622 0.89237 0.89120 0.89368 0.82946 0.71124 0.73240 0.84212 0.83530 0.89716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.81 10.32 36.01 0.37 -0.43 16 2 C 0.39 5.22 7.64 -157.25 -1.20 4.02 16 3 N -0.57 -7.80 10.33 -7.93 -0.08 -7.89 16 4 C 0.26 3.40 7.33 -17.16 -0.13 3.27 16 5 Cl -0.02 -0.23 29.15 -51.86 -1.51 -1.74 16 6 C -0.29 -3.68 9.84 -39.07 -0.38 -4.06 16 7 C 0.46 6.92 7.63 -154.76 -1.18 5.74 16 8 N -0.48 -8.03 6.41 31.23 0.20 -7.83 16 9 N -0.54 -10.56 6.29 30.16 0.19 -10.37 16 10 C 0.60 14.04 7.88 -13.05 -0.10 13.94 16 11 O -0.57 -14.33 14.29 5.14 0.07 -14.25 16 12 C -0.43 -10.35 6.51 -35.88 -0.23 -10.58 16 13 S -0.04 -0.91 22.25 -107.50 -2.39 -3.30 16 14 C -0.20 -4.09 11.07 28.86 0.32 -3.77 16 15 C -0.10 -2.33 9.04 -39.12 -0.35 -2.68 16 16 C 0.15 3.69 5.68 -106.21 -0.60 3.09 16 17 C -0.37 -9.43 8.51 -37.94 -0.32 -9.75 16 18 H 0.11 2.98 6.04 -52.48 -0.32 2.66 16 19 C 0.07 1.53 5.39 -17.29 -0.09 1.44 16 20 N -0.77 -17.59 10.81 55.57 0.60 -16.99 16 21 Si 0.93 17.50 29.57 -169.99 -5.03 12.47 16 22 H -0.26 -4.99 7.11 56.52 0.40 -4.58 16 23 H -0.27 -4.91 7.11 56.52 0.40 -4.50 16 24 H -0.26 -4.81 7.11 56.52 0.40 -4.41 16 25 N -0.58 -8.84 9.41 -9.98 -0.09 -8.93 16 26 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.09 0.71 8.14 -51.92 -0.42 0.29 16 29 H 0.15 1.57 8.06 -52.49 -0.42 1.15 16 30 H 0.44 6.92 8.01 -182.59 -1.46 5.46 16 31 H 0.43 8.06 7.07 -182.60 -1.29 6.77 16 32 H 0.14 2.41 8.06 -52.49 -0.42 1.99 16 33 H 0.15 3.34 6.40 -52.49 -0.34 3.00 16 34 H 0.29 5.96 8.29 -40.82 -0.34 5.62 16 LS Contribution 333.02 15.07 5.02 5.02 Total: -1.00 -27.87 333.02 -11.59 -39.46 By element: Atomic # 1 Polarization: 18.80 SS G_CDS: -4.65 Total: 14.14 kcal Atomic # 6 Polarization: 4.12 SS G_CDS: -3.91 Total: 0.21 kcal Atomic # 7 Polarization: -52.83 SS G_CDS: 0.81 Total: -52.01 kcal Atomic # 8 Polarization: -14.33 SS G_CDS: 0.07 Total: -14.25 kcal Atomic # 14 Polarization: 17.50 SS G_CDS: -5.03 Total: 12.47 kcal Atomic # 16 Polarization: -0.91 SS G_CDS: -2.39 Total: -3.30 kcal Atomic # 17 Polarization: -0.23 SS G_CDS: -1.51 Total: -1.74 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -27.87 -11.59 -39.46 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001299511358.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.517 kcal (2) G-P(sol) polarization free energy of solvation -27.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.465 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds